RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	C7orf77	A4D0Y5	90 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	USP17L23	D6RBM5	183 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	VCY	O14598	125 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	RAB5B	P61020	215 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	MRPL54	Q6P161	138 aa	Known RBP	5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	CBLN2	Q8IUK8	224 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	IMMP2L	Q96T52	175 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	RPS10P5	Q9NQ39	176 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	CDC42SE2	Q9NRR3	84 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	TMEM242	Q9NWH2	141 aa		5.7	□□□□□ -1.5
SSBP4-208	ENST00000600628	C1orf196	B1AJZ1	125 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	TNFRSF6B	O95407	300 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	PPBP	P02775	128 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	SMR3B	P02814	79 aa	Predicted RBP	5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	SLPI	P03973	132 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	S100A8	P05109	93 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	PMCH	P20382	165 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	CAMP	P49913	170 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	CNBP	P62633	177 aa	Known RBP	5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	HAMP	P81172	84 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	C14orf177	Q52M58	125 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	DGAT2L7P	Q6IED9	249 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	CLPSL2	Q6UWE3	100 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	C9orf163	Q8N9P6	203 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	OR5A1	Q8NGJ0	315 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	TIMM21	Q9BVV7	248 aa		5.69	□□□□□ -1.5
SSBP4-208	ENST00000600628	IGLV10-54	A0A075B6I4	117 aa		5.68	□□□□□ -1.5
SSBP4-208	ENST00000600628	COLCA2	A8K830	154 aa		5.68	□□□□□ -1.5
SSBP4-208	ENST00000600628		D6R8Y8	96 aa		5.68	□□□□□ -1.5
SSBP4-208	ENST00000600628	UBE2L6	O14933	153 aa		5.68	□□□□□ -1.5
SSBP4-208	ENST00000600628	NPY	P01303	97 aa		5.68	□□□□□ -1.5
SSBP4-208	ENST00000600628	C15orf56	Q8N910	161 aa		5.68	□□□□□ -1.5
SSBP4-208	ENST00000600628	SMIM2	Q9BVW6	85 aa		5.68	□□□□□ -1.5
SSBP4-208	ENST00000600628	UBE2D4	Q9Y2X8	147 aa		5.68	□□□□□ -1.5
SSBP4-208	ENST00000600628	TRAV9-1	A0A075B6T8	112 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	LINC00959	A0A1B0GUT2	108 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	TCAP	O15273	167 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	HLA-DQA1	P01909	254 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	CKS2	P33552	79 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	FOXI1	Q12951	378 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	CIRBP	Q14011	172 aa	Known RBP	5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	LINC01620	Q4KN68	170 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628		Q5VSD8	79 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	ZNF664	Q8N3J9	261 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	BTF3L4	Q96K17	158 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	CTDSP1	Q9GZU7	261 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	LAMTOR2	Q9Y2Q5	125 aa		5.67	□□□□□ -1.5
SSBP4-208	ENST00000600628	FAT3	Q8TDW7	4589 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	LRP1	Q07954	4544 aa	Known RBP	5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	FAM229A	H3BQW9	127 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	S100A6	P06703	90 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	RAB5A	P20339	215 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	KRTAP10-4	P60372	401 aa	Predicted RBP	5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	AMMECR1L	Q6DCA0	310 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	SDIM1	Q6ZPB5	146 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	ORMDL3	Q8N138	153 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	KIR2DL4	Q99706	377 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	HERC1	Q15751	4861 aa		5.66	□□□□□ -1.5
SSBP4-208	ENST00000600628	FLG2	Q5D862	2391 aa	Predicted RBP	5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	GVQW2	A0A096LPI5	108 aa	Predicted RBP	5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	CCL25	O15444	150 aa		5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	INAFM2	P0DMQ5	153 aa		5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	MRPS36	P82909	103 aa	Known RBP	5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	RNASEK	Q6P5S7	137 aa	Known RBP	5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	TMEM136	Q6ZRR5	245 aa		5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	PRELID3A	Q96N28	172 aa		5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	CHAC1	Q9BUX1	264 aa		5.65	□□□□□ -1.5
SSBP4-208	ENST00000600628	GAGE12H	A6NDE8	117 aa		5.64	□□□□□ -1.51
SSBP4-208	ENST00000600628	RPL39	P62891	51 aa	Known RBP	5.64	□□□□□ -1.51
SSBP4-208	ENST00000600628	CD164L2	Q6UWJ8	174 aa		5.64	□□□□□ -1.51
SSBP4-208	ENST00000600628	SCX	Q7RTU7	201 aa		5.64	□□□□□ -1.51
SSBP4-208	ENST00000600628	PYGO1	Q9Y3Y4	419 aa		5.64	□□□□□ -1.51
SSBP4-208	ENST00000600628	PANO1	I0J062	215 aa		5.63	□□□□□ -1.51
SSBP4-208	ENST00000600628	FCER1G	P30273	86 aa		5.63	□□□□□ -1.51
SSBP4-208	ENST00000600628	CIRBP-AS1	Q8TBR5	109 aa		5.63	□□□□□ -1.51
SSBP4-208	ENST00000600628	TMEM101	Q96IK0	257 aa		5.63	□□□□□ -1.51
SSBP4-208	ENST00000600628	SPANXA1	Q9NS26	97 aa		5.63	□□□□□ -1.51
SSBP4-208	ENST00000600628	IGHV3OR16-9	A0A0B4J2B5	98 aa		5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628	LINC01546	A6NGU7	62 aa		5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628		K7EMI3	77 aa		5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628	S100P	P25815	95 aa		5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628	SMAGP	Q0VAQ4	97 aa		5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628		Q6ZUT4	128 aa		5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628	LINC00518	Q8N0U6	118 aa		5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628		Q8N8P6	123 aa		5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	5.62	□□□□□ -1.51
SSBP4-208	ENST00000600628	IGKV3OR2-268	A0A0C4DH90	116 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	hDV102S1	A0JD36	115 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	NPS	P0C0P6	89 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	AKR1D1	P51857	326 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	CFAP161	Q6P656	301 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	LINC00528	Q8N1L1	170 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	TMEM18	Q96B42	140 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	YPEL4	Q96NS1	127 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	GNB1L	Q9BYB4	327 aa		5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	DMBT1	Q9UGM3	2413 aa	Predicted RBP	5.61	□□□□□ -1.51
SSBP4-208	ENST00000600628	IGLV4-3	A0A075B6K6	122 aa		5.6	□□□□□ -1.51
SSBP4-208	ENST00000600628	C5orf52	A6NGY3	159 aa		5.6	□□□□□ -1.51
SSBP4-208	ENST00000600628	PLA2G1B	P04054	148 aa	Known RBP	5.6	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms