RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 RAB5BP61020 215 aa13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 HIST1H2BCP62807 126 aa13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 HIST2H2BEQ16778 126 aa13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 DGAT2L7PQ6IED9 249 aa13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 Q6ZRN7 208 aaPredicted RBP13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 HIST1H2BHQ93079 126 aa13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 HIST1H2BNQ99877 126 aa13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 HIST1H2BMQ99879 126 aa13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 OPRPNQ99935 248 aaPredicted RBP13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 SPANXA1Q9NS26 97 aa13.4□□□□□ -0.26
SHKBP1-222ENST00000600320 RTL8CO15255 209 aa13.39□□□□□ -0.27
SHKBP1-222ENST00000600320 REG3AQ06141 175 aa13.39□□□□□ -0.27
SHKBP1-222ENST00000600320 PMCHL1Q16048 86 aa13.39□□□□□ -0.27
SHKBP1-222ENST00000600320 RNASE13Q5GAN3 156 aaKnown RBP13.39□□□□□ -0.27
SHKBP1-222ENST00000600320 BAGE3Q86Y29 109 aa13.39□□□□□ -0.27
SHKBP1-222ENST00000600320 EPPK1P58107 5090 aaKnown RBP13.39□□□□□ -0.27
SHKBP1-222ENST00000600320 TRAV8-3A0A0A6YYJ7 113 aa13.38□□□□□ -0.27
SHKBP1-222ENST00000600320 CRPP02741 224 aa13.38□□□□□ -0.27
SHKBP1-222ENST00000600320 ZNF664Q8N3J9 261 aa13.38□□□□□ -0.27
SHKBP1-222ENST00000600320 TOMM6Q96B49 74 aa13.38□□□□□ -0.27
SHKBP1-222ENST00000600320 IGKV3OR2-268A0A0C4DH90 116 aa13.37□□□□□ -0.27
SHKBP1-222ENST00000600320 SMAGPQ0VAQ4 97 aa13.37□□□□□ -0.27
SHKBP1-222ENST00000600320 CHCHD1Q96BP2 118 aaKnown RBP13.37□□□□□ -0.27
SHKBP1-222ENST00000600320 PYGO1Q9Y3Y4 419 aa13.37□□□□□ -0.27
SHKBP1-222ENST00000600320 IGIPA6NJ69 53 aa13.36□□□□□ -0.27
SHKBP1-222ENST00000600320 NUPR1O60356 82 aa13.36□□□□□ -0.27
SHKBP1-222ENST00000600320 SERF1AO75920 110 aa13.36□□□□□ -0.27
SHKBP1-222ENST00000600320 IGLV4-3A0A075B6K6 122 aa13.35□□□□□ -0.27
SHKBP1-222ENST00000600320 G0S2P27469 103 aa13.35□□□□□ -0.27
SHKBP1-222ENST00000600320 MRPS36P82909 103 aaKnown RBP13.35□□□□□ -0.27
SHKBP1-222ENST00000600320 NFE4Q86UQ8 179 aa13.35□□□□□ -0.27
SHKBP1-222ENST00000600320 BIRC6Q9NR09 4857 aa13.35□□□□□ -0.27
SHKBP1-222ENST00000600320 DNAH2Q9P225 4427 aa13.34□□□□□ -0.27
SHKBP1-222ENST00000600320 IGKV2D-24A0A075B6R9 120 aa13.34□□□□□ -0.27
SHKBP1-222ENST00000600320 C1orf196B1AJZ1 125 aa13.34□□□□□ -0.27
SHKBP1-222ENST00000600320 MIAQ16674 131 aa13.34□□□□□ -0.27
SHKBP1-222ENST00000600320 IGLV10-54A0A075B6I4 117 aa13.33□□□□□ -0.28
SHKBP1-222ENST00000600320 HBDP02042 147 aa13.33□□□□□ -0.28
SHKBP1-222ENST00000600320 ZC2HC1BQ5TFG8 222 aa13.33□□□□□ -0.28
SHKBP1-222ENST00000600320 KRTAP26-1Q6PEX3 210 aa13.33□□□□□ -0.28
SHKBP1-222ENST00000600320 SCGB3A1Q96QR1 104 aa13.33□□□□□ -0.28
SHKBP1-222ENST00000600320 HSBP1O75506 76 aa13.32□□□□□ -0.28
SHKBP1-222ENST00000600320 TIMM17AQ99595 171 aa13.32□□□□□ -0.28
SHKBP1-222ENST00000600320 DNAH10Q8IVF4 4471 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 LINC00959A0A1B0GUT2 108 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 PDZD11Q5EBL8 140 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 ERASQ7Z444 233 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 FAM19A2Q8N3H0 131 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 MAPKAPK5-AS1Q8N8E1 139 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 RMI2Q96E14 147 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 TMEM141Q96I45 108 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 C1orf43Q9BWL3 253 aa13.31□□□□□ -0.28
SHKBP1-222ENST00000600320 TNP2Q05952 138 aa13.3□□□□□ -0.28
SHKBP1-222ENST00000600320 LINC00173Q6ZV60 143 aa13.3□□□□□ -0.28
SHKBP1-222ENST00000600320 TM2D2Q9BX73 214 aa13.3□□□□□ -0.28
SHKBP1-222ENST00000600320 DNAH17Q9UFH2 4485 aa13.29□□□□□ -0.28
SHKBP1-222ENST00000600320 TRAV13-1A0A0B4J241 112 aa13.29□□□□□ -0.28
SHKBP1-222ENST00000600320 TRAV8-4A0A0B4J246 113 aa13.29□□□□□ -0.28
SHKBP1-222ENST00000600320 LINC01549A6NIU2 74 aa13.29□□□□□ -0.28
SHKBP1-222ENST00000600320 NPSP0C0P6 89 aa13.29□□□□□ -0.28
SHKBP1-222ENST00000600320 AMELXQ99217 191 aa13.29□□□□□ -0.28
SHKBP1-222ENST00000600320 CHCHD10Q8WYQ3 142 aaPredicted RBP13.28□□□□□ -0.28
SHKBP1-222ENST00000600320 IFITM10A6NMD0 228 aa13.27□□□□□ -0.29
SHKBP1-222ENST00000600320 PSCAO43653 123 aa13.27□□□□□ -0.29
SHKBP1-222ENST00000600320 NDUFA6P56556 154 aa13.27□□□□□ -0.29
SHKBP1-222ENST00000600320 Q6ZN92 141 aa13.27□□□□□ -0.29
SHKBP1-222ENST00000600320 TEX43Q6ZNM6 134 aa13.27□□□□□ -0.29
SHKBP1-222ENST00000600320 GAGE12HA6NDE8 117 aa13.26□□□□□ -0.29
SHKBP1-222ENST00000600320 CCL25O15444 150 aa13.26□□□□□ -0.29
SHKBP1-222ENST00000600320 WFDC2Q14508 124 aa13.26□□□□□ -0.29
SHKBP1-222ENST00000600320 SS18Q15532 418 aa13.26□□□□□ -0.29
SHKBP1-222ENST00000600320 COA6Q5JTJ3 125 aaKnown RBP13.26□□□□□ -0.29
SHKBP1-222ENST00000600320 VCX2Q9H322 139 aa13.26□□□□□ -0.29
SHKBP1-222ENST00000600320 COX11Q9Y6N1 276 aa13.26□□□□□ -0.29
SHKBP1-222ENST00000600320 PRSS29PA6NIE9 313 aa13.25□□□□□ -0.29
SHKBP1-222ENST00000600320 XCL1P47992 114 aa13.25□□□□□ -0.29
SHKBP1-222ENST00000600320 LINC00336Q6ZUF6 198 aa13.25□□□□□ -0.29
SHKBP1-222ENST00000600320 BAALCQ8WXS3 180 aa13.25□□□□□ -0.29
SHKBP1-222ENST00000600320 FRAS1Q86XX4 4008 aa13.24□□□□□ -0.29
SHKBP1-222ENST00000600320 LRCOL1A6NCL2 159 aa13.24□□□□□ -0.29
SHKBP1-222ENST00000600320 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.24□□□□□ -0.29
SHKBP1-222ENST00000600320 ATP5LO75964 103 aa13.23□□□□□ -0.29
SHKBP1-222ENST00000600320 UBE2D1P51668 147 aa13.23□□□□□ -0.29
SHKBP1-222ENST00000600320 FOXI1Q12951 378 aa13.23□□□□□ -0.29
SHKBP1-222ENST00000600320 PAPPA-AS1Q5QFB9 102 aa13.23□□□□□ -0.29
SHKBP1-222ENST00000600320 C2orf88Q9BSF0 95 aa13.23□□□□□ -0.29
SHKBP1-222ENST00000600320 A0A087WTM6 91 aa13.22□□□□□ -0.29
SHKBP1-222ENST00000600320 LECT2O14960 151 aa13.22□□□□□ -0.29
SHKBP1-222ENST00000600320 LINC00242Q5T6M2 205 aa13.21□□□□□ -0.29
SHKBP1-222ENST00000600320 CST9LQ9H4G1 147 aa13.21□□□□□ -0.29
SHKBP1-222ENST00000600320 COX6A2Q02221 97 aa13.2□□□□□ -0.3
SHKBP1-222ENST00000600320 PMVKQ15126 192 aa13.2□□□□□ -0.3
SHKBP1-222ENST00000600320 CD164L2Q6UWJ8 174 aa13.2□□□□□ -0.3
SHKBP1-222ENST00000600320 IFI27L1Q96BM0 104 aa13.2□□□□□ -0.3
SHKBP1-222ENST00000600320 FAT2Q9NYQ8 4349 aa13.2□□□□□ -0.3
SHKBP1-222ENST00000600320 LEPROTL1O95214 131 aa13.19□□□□□ -0.3
SHKBP1-222ENST00000600320 FABP4P15090 132 aa13.19□□□□□ -0.3
SHKBP1-222ENST00000600320 A0A0J9YXV3 536 aa13.18□□□□□ -0.3
SHKBP1-222ENST00000600320 A0A1B0GVY2 172 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 137.6 ms