RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 NAV3Q8IVL0 2385 aa15.12■□□□□ 0.01
UPF1-207ENST00000599848 TAX1BP3O14907 124 aa15.11■□□□□ 0.01
UPF1-207ENST00000599848 IGLV5-52A0A0A0MRZ9 124 aa15.11■□□□□ 0.01
UPF1-207ENST00000599848 MRPS36P82909 103 aaKnown RBP15.11■□□□□ 0.01
UPF1-207ENST00000599848 A0A1B0GXF2 115 aa15.1■□□□□ 0.01
UPF1-207ENST00000599848 NAV2Q8IVL1 2488 aa15.1■□□□□ 0.01
UPF1-207ENST00000599848 ADAMTS9Q9P2N4 1935 aa15.1■□□□□ 0.01
UPF1-207ENST00000599848 C1orf134Q5TEV5 83 aa15.1■□□□□ 0.01
UPF1-207ENST00000599848 CLUHP3Q96NS8 147 aa15.1■□□□□ 0.01
UPF1-207ENST00000599848 TRBV27A0A0K0K1C4 114 aa15.09■□□□□ 0.01
UPF1-207ENST00000599848 TMEM223A0PJW6 202 aa15.09■□□□□ 0.01
UPF1-207ENST00000599848 FXYD2P54710 66 aa15.09■□□□□ 0.01
UPF1-207ENST00000599848 C22orf34Q6ZV56 151 aa15.09■□□□□ 0.01
UPF1-207ENST00000599848 CHD3Q12873 2000 aaKnown RBP15.09■□□□□ 0.01
UPF1-207ENST00000599848 ZNF22P17026 224 aaPredicted RBP15.08■□□□□ 0.01
UPF1-207ENST00000599848 LINC00173Q6ZV60 143 aa15.08■□□□□ 0.01
UPF1-207ENST00000599848 DENND4AQ7Z401 1863 aa15.08■□□□□ 0
UPF1-207ENST00000599848 KIF26AQ9ULI4 1882 aaPredicted RBP15.07■□□□□ 0
UPF1-207ENST00000599848 LINC00308Q8TCZ7 52 aa15.07■□□□□ 0
UPF1-207ENST00000599848 FRMD6-AS1P0C7T7 363 aa15.07■□□□□ 0
UPF1-207ENST00000599848 TRBV30A0A0K0K1B3 111 aa15.07■□□□□ 0
UPF1-207ENST00000599848 FAM236AA0A1B0GUQ0 79 aa15.07■□□□□ 0
UPF1-207ENST00000599848 FAM236BA0A1B0GV22 79 aa15.07■□□□□ 0
UPF1-207ENST00000599848 C10orf99Q6UWK7 81 aa15.07■□□□□ 0
UPF1-207ENST00000599848 MLST8Q9BVC4 326 aa15.07■□□□□ 0
UPF1-207ENST00000599848 LINC00959A0A1B0GUT2 108 aa15.07■□□□□ 0
UPF1-207ENST00000599848 IGLV1-51P01701 117 aa15.07■□□□□ 0
UPF1-207ENST00000599848 KLLNB2CW77 178 aa15.06■□□□□ 0
UPF1-207ENST00000599848 SPINK6Q6UWN8 80 aa15.06■□□□□ 0
UPF1-207ENST00000599848 SERP1Q9Y6X1 66 aa15.06■□□□□ 0
UPF1-207ENST00000599848 EGFEM1PQ0D2K5 195 aa15.05■□□□□ -0
UPF1-207ENST00000599848 CDPF1Q6NVV7 123 aa15.04■□□□□ -0
UPF1-207ENST00000599848 C11orf1Q9H5F2 150 aa15.04■□□□□ -0
UPF1-207ENST00000599848 SORL1Q92673 2214 aa15.04■□□□□ -0
UPF1-207ENST00000599848 Q8IZM0 81 aa15.04■□□□□ -0
UPF1-207ENST00000599848 C2orf16Q68DN1 1984 aa15.04■□□□□ -0
UPF1-207ENST00000599848 CCKP06307 115 aa15.04■□□□□ -0
UPF1-207ENST00000599848 FOXI1Q12951 378 aa15.04■□□□□ -0
UPF1-207ENST00000599848 C6orf99Q4VX62 202 aa15.04■□□□□ -0
UPF1-207ENST00000599848 BRI3O95415 125 aa15.02■□□□□ -0
UPF1-207ENST00000599848 WNK1Q9H4A3 2382 aa15.02■□□□□ -0
UPF1-207ENST00000599848 EIF4EBP1Q13541 118 aaPredicted RBP15.02□□□□□ -0.01
UPF1-207ENST00000599848 CRIP2P52943 208 aaPredicted RBP15.02□□□□□ -0.01
UPF1-207ENST00000599848 C10orf25Q5T742 122 aa15.01□□□□□ -0.01
UPF1-207ENST00000599848 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP15.01□□□□□ -0.01
UPF1-207ENST00000599848 MYO18BQ8IUG5 2567 aa15.01□□□□□ -0.01
UPF1-207ENST00000599848 IGKV2-28A0A075B6P5 120 aa15.01□□□□□ -0.01
UPF1-207ENST00000599848 IGKV2D-28P01615 120 aa15.01□□□□□ -0.01
UPF1-207ENST00000599848 C3orf22Q8N5N4 141 aa15.01□□□□□ -0.01
UPF1-207ENST00000599848 DENND4CQ5VZ89 1909 aa15□□□□□ -0.01
UPF1-207ENST00000599848 GDF5OSQ5U4N7 250 aa15□□□□□ -0.01
UPF1-207ENST00000599848 PPDPFQ9H3Y8 114 aa15□□□□□ -0.01
UPF1-207ENST00000599848 C1orf158Q8N1D5 194 aa15□□□□□ -0.01
UPF1-207ENST00000599848 MRPL55Q7Z7F7 128 aaKnown RBP14.99□□□□□ -0.01
UPF1-207ENST00000599848 PRB2P02812 416 aaPredicted RBP14.99□□□□□ -0.01
UPF1-207ENST00000599848 Q8N9L7 120 aa14.98□□□□□ -0.01
UPF1-207ENST00000599848 DCANP1Q8TF63 244 aa14.98□□□□□ -0.01
UPF1-207ENST00000599848 PLXNB3Q9ULL4 1909 aa14.98□□□□□ -0.01
UPF1-207ENST00000599848 V9GYY9 64 aa14.97□□□□□ -0.01
UPF1-207ENST00000599848 TEX49A0A1B0GTD5 131 aa14.97□□□□□ -0.01
UPF1-207ENST00000599848 M0QXV9 152 aa14.97□□□□□ -0.01
UPF1-207ENST00000599848 BRWD1-AS2P59051 145 aa14.97□□□□□ -0.01
UPF1-207ENST00000599848 WFDC10AQ9H1F0 79 aa14.96□□□□□ -0.01
UPF1-207ENST00000599848 COL4A4P53420 1690 aaPredicted RBP14.96□□□□□ -0.01
UPF1-207ENST00000599848 J3KT08 172 aa14.96□□□□□ -0.01
UPF1-207ENST00000599848 ZNF73O43830 326 aaPredicted RBP14.96□□□□□ -0.01
UPF1-207ENST00000599848 IGLV2-8P01709 118 aa14.96□□□□□ -0.02
UPF1-207ENST00000599848 Q6JHZ5 121 aa14.96□□□□□ -0.02
UPF1-207ENST00000599848 OBSL1O75147 1896 aa14.95□□□□□ -0.02
UPF1-207ENST00000599848 TTTY13Q9BZ97 58 aa14.95□□□□□ -0.02
UPF1-207ENST00000599848 IGLV9-49A0A0B4J1Y8 123 aa14.95□□□□□ -0.02
UPF1-207ENST00000599848 WFDC10BQ8IUB3 73 aa14.95□□□□□ -0.02
UPF1-207ENST00000599848 FREM1Q5H8C1 2179 aa14.95□□□□□ -0.02
UPF1-207ENST00000599848 HIVEP3Q5T1R4 2406 aa14.95□□□□□ -0.02
UPF1-207ENST00000599848 TSHBP01222 138 aa14.93□□□□□ -0.02
UPF1-207ENST00000599848 C18orf65Q6ZTR6 163 aa14.93□□□□□ -0.02
UPF1-207ENST00000599848 SMR3AQ99954 134 aa14.93□□□□□ -0.02
UPF1-207ENST00000599848 ODF3L2Q3SX64 289 aa14.93□□□□□ -0.02
UPF1-207ENST00000599848 LST1O00453 97 aa14.92□□□□□ -0.02
UPF1-207ENST00000599848 KRTAP10-9P60411 292 aa14.91□□□□□ -0.02
UPF1-207ENST00000599848 RNASE3P12724 160 aaKnown RBP14.91□□□□□ -0.02
UPF1-207ENST00000599848 Q6ZQY7 126 aa14.91□□□□□ -0.02
UPF1-207ENST00000599848 ATP5EP56381 51 aaPredicted RBP14.91□□□□□ -0.02
UPF1-207ENST00000599848 LIMD2Q9BT23 127 aa14.91□□□□□ -0.02
UPF1-207ENST00000599848 RNF185Q96GF1 192 aa14.9□□□□□ -0.02
UPF1-207ENST00000599848 C1orf229Q6ZS94 237 aaPredicted RBP14.9□□□□□ -0.02
UPF1-207ENST00000599848 NDUFC1O43677 76 aa14.89□□□□□ -0.03
UPF1-207ENST00000599848 CCDC168Q8NDH2 2452 aa14.89□□□□□ -0.03
UPF1-207ENST00000599848 NUPR1O60356 82 aa14.89□□□□□ -0.03
UPF1-207ENST00000599848 TNRC6BQ9UPQ9 1833 aaKnown RBP14.89□□□□□ -0.03
UPF1-207ENST00000599848 CYSRT1A8MQ03 144 aa14.89□□□□□ -0.03
UPF1-207ENST00000599848 AVPP01185 164 aa14.88□□□□□ -0.03
UPF1-207ENST00000599848 REG3GQ6UW15 175 aa14.88□□□□□ -0.03
UPF1-207ENST00000599848 WFDC2Q14508 124 aa14.88□□□□□ -0.03
UPF1-207ENST00000599848 PROK1P58294 105 aa14.87□□□□□ -0.03
UPF1-207ENST00000599848 CDC42SE2Q9NRR3 84 aa14.87□□□□□ -0.03
UPF1-207ENST00000599848 HRCT1Q6UXD1 115 aa14.87□□□□□ -0.03
UPF1-207ENST00000599848 C2orf48Q96LS8 159 aa14.87□□□□□ -0.03
UPF1-207ENST00000599848 LOC100131303A0A0U1RQF7 123 aa14.86□□□□□ -0.03
UPF1-207ENST00000599848 PLA2G2EQ9NZK7 142 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms