RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CDC42SE2Q9NRR3 84 aa12.78□□□□□ -0.36
SHKBP1-221ENST00000599833 LAMTOR2Q9Y2Q5 125 aa12.78□□□□□ -0.36
SHKBP1-221ENST00000599833 TRAV8-4A0A0B4J246 113 aa12.77□□□□□ -0.37
SHKBP1-221ENST00000599833 FCER1GP30273 86 aa12.77□□□□□ -0.37
SHKBP1-221ENST00000599833 AMMECR1LQ6DCA0 310 aa12.77□□□□□ -0.37
SHKBP1-221ENST00000599833 RNASEKQ6P5S7 137 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-221ENST00000599833 TCAPO15273 167 aa12.76□□□□□ -0.37
SHKBP1-221ENST00000599833 SLC7A5P1Q8MH63 180 aa12.76□□□□□ -0.37
SHKBP1-221ENST00000599833 SVBPQ8N300 66 aa12.76□□□□□ -0.37
SHKBP1-221ENST00000599833 YPEL4Q96NS1 127 aa12.76□□□□□ -0.37
SHKBP1-221ENST00000599833 GNB1LQ9BYB4 327 aa12.76□□□□□ -0.37
SHKBP1-221ENST00000599833 CSDC2Q9Y534 153 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-221ENST00000599833 OR5A1Q8NGJ0 315 aa12.75□□□□□ -0.37
SHKBP1-221ENST00000599833 USP17L23D6RBM5 183 aa12.74□□□□□ -0.37
SHKBP1-221ENST00000599833 CDK2AP2O75956 126 aa12.74□□□□□ -0.37
SHKBP1-221ENST00000599833 HLA-DQA1P01909 254 aa12.74□□□□□ -0.37
SHKBP1-221ENST00000599833 S100PP25815 95 aa12.74□□□□□ -0.37
SHKBP1-221ENST00000599833 RPL39P62891 51 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-221ENST00000599833 KIAA1644Q3SXP7 199 aa12.74□□□□□ -0.37
SHKBP1-221ENST00000599833 TIMM21Q9BVV7 248 aa12.74□□□□□ -0.37
SHKBP1-221ENST00000599833 IGLV5-52A0A0A0MRZ9 124 aa12.73□□□□□ -0.37
SHKBP1-221ENST00000599833 SNAPINO95295 136 aa12.73□□□□□ -0.37
SHKBP1-221ENST00000599833 ZNF664Q8N3J9 261 aa12.73□□□□□ -0.37
SHKBP1-221ENST00000599833 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-221ENST00000599833 TGIF2-C20orf24A0A0A6YYL0 155 aa12.72□□□□□ -0.37
SHKBP1-221ENST00000599833 Q8N8P6 123 aa12.72□□□□□ -0.37
SHKBP1-221ENST00000599833 IGKV3OR2-268A0A0C4DH90 116 aa12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 LOC389332A0A1B0GUA5 103 aa12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 LINC00959A0A1B0GUT2 108 aa12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 PRSS1P07477 247 aa12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 GCSHP23434 173 aa12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 Q6ZUT4 128 aa12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 CHCHD10Q8WYQ3 142 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 TMEM101Q96IK0 257 aa12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 MAP1LC3AQ9H492 121 aa12.71□□□□□ -0.37
SHKBP1-221ENST00000599833 FOXI1Q12951 378 aa12.7□□□□□ -0.38
SHKBP1-221ENST00000599833 NDUFA5Q16718 116 aa12.7□□□□□ -0.38
SHKBP1-221ENST00000599833 ALKBH7Q9BT30 221 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-221ENST00000599833 GAGE12HA6NDE8 117 aa12.69□□□□□ -0.38
SHKBP1-221ENST00000599833 XGP55808 180 aa12.69□□□□□ -0.38
SHKBP1-221ENST00000599833 RNASE13Q5GAN3 156 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-221ENST00000599833 C15orf56Q8N910 161 aa12.69□□□□□ -0.38
SHKBP1-221ENST00000599833 COX19Q49B96 90 aa12.68□□□□□ -0.38
SHKBP1-221ENST00000599833 OPRPNQ99935 248 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-221ENST00000599833 MRPL18Q9H0U6 180 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-221ENST00000599833 MT-ND6P03923 174 aa12.67□□□□□ -0.38
SHKBP1-221ENST00000599833 IFI27P40305 119 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-221ENST00000599833 FAM30AQ9NZY2 134 aa12.67□□□□□ -0.38
SHKBP1-221ENST00000599833 SLPIP03973 132 aa12.66□□□□□ -0.38
SHKBP1-221ENST00000599833 MRPS36P82909 103 aaKnown RBP12.66□□□□□ -0.38
SHKBP1-221ENST00000599833 LINC01620Q4KN68 170 aa12.66□□□□□ -0.38
SHKBP1-221ENST00000599833 C14orf177Q52M58 125 aa12.66□□□□□ -0.38
SHKBP1-221ENST00000599833 Q6ZSA8 131 aa12.66□□□□□ -0.38
SHKBP1-221ENST00000599833 TMEM18Q96B42 140 aa12.66□□□□□ -0.38
SHKBP1-221ENST00000599833 SPANXA1Q9NS26 97 aa12.66□□□□□ -0.38
SHKBP1-221ENST00000599833 LINC01546A6NGU7 62 aa12.65□□□□□ -0.38
SHKBP1-221ENST00000599833 CCL25O15444 150 aa12.65□□□□□ -0.38
SHKBP1-221ENST00000599833 RAB5AP20339 215 aa12.65□□□□□ -0.38
SHKBP1-221ENST00000599833 PYGO1Q9Y3Y4 419 aa12.65□□□□□ -0.38
SHKBP1-221ENST00000599833 K7EMI3 77 aa12.64□□□□□ -0.39
SHKBP1-221ENST00000599833 DGAT2L7PQ6IED9 249 aa12.64□□□□□ -0.39
SHKBP1-221ENST00000599833 NXT2Q9NPJ8 142 aaKnown RBP12.64□□□□□ -0.39
SHKBP1-221ENST00000599833 IGLV4-3A0A075B6K6 122 aa12.63□□□□□ -0.39
SHKBP1-221ENST00000599833 XCL1P47992 114 aa12.63□□□□□ -0.39
SHKBP1-221ENST00000599833 SMAGPQ0VAQ4 97 aa12.63□□□□□ -0.39
SHKBP1-221ENST00000599833 CBLN2Q8IUK8 224 aa12.63□□□□□ -0.39
SHKBP1-221ENST00000599833 FABP9Q0Z7S8 132 aa12.62□□□□□ -0.39
SHKBP1-221ENST00000599833 CD164L2Q6UWJ8 174 aa12.62□□□□□ -0.39
SHKBP1-221ENST00000599833 IGIPA6NJ69 53 aa12.61□□□□□ -0.39
SHKBP1-221ENST00000599833 CNBPP62633 177 aaKnown RBP12.61□□□□□ -0.39
SHKBP1-221ENST00000599833 ORMDL2Q53FV1 153 aa12.61□□□□□ -0.39
SHKBP1-221ENST00000599833 C2orf66Q6UXQ4 117 aa12.61□□□□□ -0.39
SHKBP1-221ENST00000599833 KRTAP4-5Q9BYR2 181 aa12.61□□□□□ -0.39
SHKBP1-221ENST00000599833 SS18Q15532 418 aa12.6□□□□□ -0.39
SHKBP1-221ENST00000599833 LINC00173Q6ZV60 143 aa12.6□□□□□ -0.39
SHKBP1-221ENST00000599833 URB1-AS1Q96HZ7 61 aa12.6□□□□□ -0.39
SHKBP1-221ENST00000599833 PKHD1L1Q86WI1 4243 aa12.6□□□□□ -0.39
SHKBP1-221ENST00000599833 GVQW2A0A096LPI5 108 aaPredicted RBP12.59□□□□□ -0.39
SHKBP1-221ENST00000599833 TRAV13-1A0A0B4J241 112 aa12.59□□□□□ -0.39
SHKBP1-221ENST00000599833 C1orf196B1AJZ1 125 aa12.59□□□□□ -0.39
SHKBP1-221ENST00000599833 C9orf163Q8N9P6 203 aa12.59□□□□□ -0.39
SHKBP1-221ENST00000599833 CYSLTR1Q9Y271 337 aa12.59□□□□□ -0.39
SHKBP1-221ENST00000599833 TRAPPC1Q9Y5R8 145 aa12.59□□□□□ -0.39
SHKBP1-221ENST00000599833 HAMPP81172 84 aa12.58□□□□□ -0.4
SHKBP1-221ENST00000599833 hDV102S1A0JD36 115 aa12.57□□□□□ -0.4
SHKBP1-221ENST00000599833 ZC2HC1BQ5TFG8 222 aa12.57□□□□□ -0.4
SHKBP1-221ENST00000599833 C18orf32Q8TCD1 76 aa12.57□□□□□ -0.4
SHKBP1-221ENST00000599833 TOMM6Q96B49 74 aa12.57□□□□□ -0.4
SHKBP1-221ENST00000599833 AMELXQ99217 191 aa12.57□□□□□ -0.4
SHKBP1-221ENST00000599833 HIGD2BQ4VC39 106 aa12.56□□□□□ -0.4
SHKBP1-221ENST00000599833 TMEM141Q96I45 108 aa12.56□□□□□ -0.4
SHKBP1-221ENST00000599833 SMCO4Q9NRQ5 59 aa12.56□□□□□ -0.4
SHKBP1-221ENST00000599833 A0A096LNJ9 63 aa12.55□□□□□ -0.4
SHKBP1-221ENST00000599833 IGHV3OR16-9A0A0B4J2B5 98 aa12.55□□□□□ -0.4
SHKBP1-221ENST00000599833 NPSP0C0P6 89 aa12.55□□□□□ -0.4
SHKBP1-221ENST00000599833 SDIM1Q6ZPB5 146 aa12.55□□□□□ -0.4
SHKBP1-221ENST00000599833 PRSS3P2Q8NHM4 247 aa12.55□□□□□ -0.4
SHKBP1-221ENST00000599833 IFITM10A6NMD0 228 aa12.54□□□□□ -0.4
SHKBP1-221ENST00000599833 CFAP161Q6P656 301 aa12.54□□□□□ -0.4
SHKBP1-221ENST00000599833 Q8N1X5 172 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms