RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 C9orf62Q8N4C0 152 aa5.3□□□□□ -1.56
SHKBP1-220ENST00000599716 SYCNQ0VAF6 134 aa5.29□□□□□ -1.56
SHKBP1-220ENST00000599716 PHF5AQ7RTV0 110 aaKnown RBP5.29□□□□□ -1.56
SHKBP1-220ENST00000599716 PRR26Q8N8Z3 221 aa5.29□□□□□ -1.56
SHKBP1-220ENST00000599716 OR5A1Q8NGJ0 315 aa5.29□□□□□ -1.56
SHKBP1-220ENST00000599716 MANBALQ9NQG1 85 aa5.29□□□□□ -1.56
SHKBP1-220ENST00000599716 MED9Q9NWA0 146 aa5.29□□□□□ -1.56
SHKBP1-220ENST00000599716 TMEM242Q9NWH2 141 aa5.29□□□□□ -1.56
SHKBP1-220ENST00000599716 PSORS1C2Q9UIG4 136 aa5.29□□□□□ -1.56
SHKBP1-220ENST00000599716 IGLV4-69A0A075B6H9 119 aa5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 IGHV1-58A0A0C4DH39 117 aa5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 KANTRA0A1W2PQU2 76 aa5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 XKRY2A2RUG3 117 aa5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 TSHBP01222 138 aa5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 PMCHP20382 165 aa5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 PTTG1IPP53801 180 aa5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 ZNF345Q14585 488 aa5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 C9orf116Q5BN46 136 aaPredicted RBP5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 OPRPNQ99935 248 aaPredicted RBP5.28□□□□□ -1.56
SHKBP1-220ENST00000599716 ZNF561-AS1K7EIQ3 104 aa5.27□□□□□ -1.57
SHKBP1-220ENST00000599716 CAMPP49913 170 aa5.27□□□□□ -1.57
SHKBP1-220ENST00000599716 MEF2BQ02080 365 aaPredicted RBP5.27□□□□□ -1.57
SHKBP1-220ENST00000599716 C1orf137Q5JT78 98 aa5.27□□□□□ -1.57
SHKBP1-220ENST00000599716 KRTAP11-1Q8IUC1 163 aa5.27□□□□□ -1.57
SHKBP1-220ENST00000599716 RPP21Q9H633 154 aaKnown RBP5.27□□□□□ -1.57
SHKBP1-220ENST00000599716 LINC00474Q9P2X8 69 aa5.27□□□□□ -1.57
SHKBP1-220ENST00000599716 SMKR1H3BMG3 65 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 I3L3M4 83 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 NCR2O95944 276 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 MT-ND6P03923 174 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 ESDP10768 282 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 RPL18AQ02543 176 aaKnown RBP5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 OCC1Q8TAD7 63 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 TMEM101Q96IK0 257 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 BTF3L4Q96K17 158 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 CNFNQ9BYD5 112 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 CDC42SE2Q9NRR3 84 aa5.26□□□□□ -1.57
SHKBP1-220ENST00000599716 TRAV1-1A0A0B4J248 108 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 LOC107984640A0A0U1RRK4 108 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 FAM168BA1KXE4 195 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 HMSDA8MTL9 139 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 H7C423 109 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 SS18Q15532 418 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 RGS21Q2M5E4 152 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 CD164L2Q6UWJ8 174 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 C5orf38Q86SI9 138 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 ZNF664Q8N3J9 261 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 NUP35Q8NFH5 326 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 CAMK2N2Q96S95 79 aa5.25□□□□□ -1.57
SHKBP1-220ENST00000599716 TRAV13-1A0A0B4J241 112 aa5.24□□□□□ -1.57
SHKBP1-220ENST00000599716 PDE6DO43924 150 aa5.24□□□□□ -1.57
SHKBP1-220ENST00000599716 ZNF25P17030 456 aaPredicted RBP5.24□□□□□ -1.57
SHKBP1-220ENST00000599716 MALP21145 153 aa5.24□□□□□ -1.57
SHKBP1-220ENST00000599716 SMIM12Q96EX1 92 aa5.24□□□□□ -1.57
SHKBP1-220ENST00000599716 MRAP2Q96G30 205 aa5.24□□□□□ -1.57
SHKBP1-220ENST00000599716 GATCO43716 136 aaKnown RBP5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 ATP6V1G1O75348 118 aa5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 APOMO95445 188 aa5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 CEBPGP53567 150 aa5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 EIF5AP63241 154 aaKnown RBP5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 EIF5AL1Q6IS14 154 aaKnown RBP5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 Q6ZUT4 128 aa5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 SMIM15Q7Z3B0 74 aa5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 ST20Q9HBF5 79 aa5.23□□□□□ -1.57
SHKBP1-220ENST00000599716 TRBV6-5A0A0K0K1A5 114 aa5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 C7orf77A4D0Y5 90 aa5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 COX7A2LO14548 114 aa5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 IGLV7-43P04211 117 aa5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 POLR2KP53803 58 aaKnown RBP5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 C10orf25Q5T742 122 aa5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 MRPL52Q86TS9 123 aaKnown RBP5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 AMN1Q8IY45 258 aa5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 BIN3Q9NQY0 253 aa5.22□□□□□ -1.57
SHKBP1-220ENST00000599716 A0A087WZ39 114 aa5.21□□□□□ -1.58
SHKBP1-220ENST00000599716 SPAG11BQ08648 103 aa5.21□□□□□ -1.58
SHKBP1-220ENST00000599716 PRR4Q16378 134 aa5.21□□□□□ -1.58
SHKBP1-220ENST00000599716 TEX261Q6UWH6 196 aa5.21□□□□□ -1.58
SHKBP1-220ENST00000599716 FAM19A5Q7Z5A7 132 aaPredicted RBP5.21□□□□□ -1.58
SHKBP1-220ENST00000599716 ISOC2Q96AB3 205 aa5.21□□□□□ -1.58
SHKBP1-220ENST00000599716 UBE2D4Q9Y2X8 147 aa5.21□□□□□ -1.58
SHKBP1-220ENST00000599716 C1orf196B1AJZ1 125 aa5.2□□□□□ -1.58
SHKBP1-220ENST00000599716 TEX46H3BTG2 121 aa5.2□□□□□ -1.58
SHKBP1-220ENST00000599716 KRTAP1-4P0C5Y4 121 aa5.2□□□□□ -1.58
SHKBP1-220ENST00000599716 RAB4AP20338 218 aa5.2□□□□□ -1.58
SHKBP1-220ENST00000599716 FCER1GP30273 86 aa5.2□□□□□ -1.58
SHKBP1-220ENST00000599716 KRTAP7-1Q8IUC3 87 aa5.2□□□□□ -1.58
SHKBP1-220ENST00000599716 PKIGQ9Y2B9 76 aa5.2□□□□□ -1.58
SHKBP1-220ENST00000599716 TRBV27A0A0K0K1C4 114 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 A0A1B0GVG6 124 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 H0Y9J4 135 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 S100A1P23297 94 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 RPL39P62891 51 aaKnown RBP5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 GAGE2EQ4V326 116 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 UNQ6190/PRO20217Q6UXQ8 127 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 NRACQ8N912 160 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 ORAOV1Q8WV07 137 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 DIRC1Q969H9 104 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 GAGE2DQ9UEU5 116 aa5.19□□□□□ -1.58
SHKBP1-220ENST00000599716 HIGD1CA8MV81 97 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 100.5 ms