RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 NPSP0C0P6 89 aa11.07□□□□□ -0.64
SHKBP1-219ENST00000599575 CDC42SE2Q9NRR3 84 aa11.07□□□□□ -0.64
SHKBP1-219ENST00000599575 PYGO1Q9Y3Y4 419 aa11.07□□□□□ -0.64
SHKBP1-219ENST00000599575 DNAH10Q8IVF4 4471 aa11.06□□□□□ -0.64
SHKBP1-219ENST00000599575 EREGO14944 169 aa11.06□□□□□ -0.64
SHKBP1-219ENST00000599575 RAB5BP61020 215 aa11.06□□□□□ -0.64
SHKBP1-219ENST00000599575 ZNF664Q8N3J9 261 aa11.06□□□□□ -0.64
SHKBP1-219ENST00000599575 CYSLTR1Q9Y271 337 aa11.06□□□□□ -0.64
SHKBP1-219ENST00000599575 IGKV2D-24A0A075B6R9 120 aa11.05□□□□□ -0.64
SHKBP1-219ENST00000599575 MRPS36P82909 103 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-219ENST00000599575 C18orf32Q8TCD1 76 aa11.05□□□□□ -0.64
SHKBP1-219ENST00000599575 TNP2Q05952 138 aa11.04□□□□□ -0.64
SHKBP1-219ENST00000599575 FA2HQ7L5A8 372 aa11.04□□□□□ -0.64
SHKBP1-219ENST00000599575 ATP6V1G1O75348 118 aa11.03□□□□□ -0.64
SHKBP1-219ENST00000599575 C2orf66Q6UXQ4 117 aa11.03□□□□□ -0.64
SHKBP1-219ENST00000599575 AP5S1Q9NUS5 200 aa11.03□□□□□ -0.64
SHKBP1-219ENST00000599575 DNAH17Q9UFH2 4485 aa11.03□□□□□ -0.64
SHKBP1-219ENST00000599575 FRAS1Q86XX4 4008 aa11.02□□□□□ -0.65
SHKBP1-219ENST00000599575 LINC00614P0C842 121 aa11.02□□□□□ -0.65
SHKBP1-219ENST00000599575 RPL39P62891 51 aaKnown RBP11.02□□□□□ -0.65
SHKBP1-219ENST00000599575 PAPPA-AS1Q5QFB9 102 aa11.02□□□□□ -0.65
SHKBP1-219ENST00000599575 A0A087WTM6 91 aa11.01□□□□□ -0.65
SHKBP1-219ENST00000599575 TRGC2P03986 189 aa11.01□□□□□ -0.65
SHKBP1-219ENST00000599575 A0A1B0GVY2 172 aa11□□□□□ -0.65
SHKBP1-219ENST00000599575 C1orf196B1AJZ1 125 aa11□□□□□ -0.65
SHKBP1-219ENST00000599575 SS18Q15532 418 aa11□□□□□ -0.65
SHKBP1-219ENST00000599575 CLPSL2Q6UWE3 100 aa11□□□□□ -0.65
SHKBP1-219ENST00000599575 TOMM6Q96B49 74 aa11□□□□□ -0.65
SHKBP1-219ENST00000599575 TIMM17AQ99595 171 aa11□□□□□ -0.65
SHKBP1-219ENST00000599575 FAT2Q9NYQ8 4349 aa11□□□□□ -0.65
SHKBP1-219ENST00000599575 LINC00959A0A1B0GUT2 108 aa10.99□□□□□ -0.65
SHKBP1-219ENST00000599575 LRCOL1A6NCL2 159 aa10.99□□□□□ -0.65
SHKBP1-219ENST00000599575 SCO1O75880 301 aa10.99□□□□□ -0.65
SHKBP1-219ENST00000599575 C14orf177Q52M58 125 aa10.99□□□□□ -0.65
SHKBP1-219ENST00000599575 Q6ZN92 141 aa10.99□□□□□ -0.65
SHKBP1-219ENST00000599575 CHCHD1Q96BP2 118 aaKnown RBP10.99□□□□□ -0.65
SHKBP1-219ENST00000599575 IGIPA6NJ69 53 aa10.98□□□□□ -0.65
SHKBP1-219ENST00000599575 KRTAP26-1Q6PEX3 210 aa10.98□□□□□ -0.65
SHKBP1-219ENST00000599575 ERASQ7Z444 233 aa10.98□□□□□ -0.65
SHKBP1-219ENST00000599575 TMEM141Q96I45 108 aa10.98□□□□□ -0.65
SHKBP1-219ENST00000599575 PGPEP1Q9NXJ5 209 aa10.98□□□□□ -0.65
SHKBP1-219ENST00000599575 CDPF1Q6NVV7 123 aa10.97□□□□□ -0.65
SHKBP1-219ENST00000599575 Q6ZUT4 128 aa10.97□□□□□ -0.65
SHKBP1-219ENST00000599575 NTN5Q8WTR8 489 aaPredicted RBP10.97□□□□□ -0.65
SHKBP1-219ENST00000599575 CHCHD10Q8WYQ3 142 aaPredicted RBP10.97□□□□□ -0.65
SHKBP1-219ENST00000599575 IGLV10-54A0A075B6I4 117 aa10.96□□□□□ -0.65
SHKBP1-219ENST00000599575 IGLV4-3A0A075B6K6 122 aa10.96□□□□□ -0.65
SHKBP1-219ENST00000599575 IGKV3OR2-268A0A0C4DH90 116 aa10.96□□□□□ -0.65
SHKBP1-219ENST00000599575 CD164L2Q6UWJ8 174 aa10.96□□□□□ -0.65
SHKBP1-219ENST00000599575 TEX43Q6ZNM6 134 aa10.96□□□□□ -0.65
SHKBP1-219ENST00000599575 MAPKAPK5-AS1Q8N8E1 139 aa10.96□□□□□ -0.65
SHKBP1-219ENST00000599575 HECTD4Q9Y4D8 3996 aa10.95□□□□□ -0.66
SHKBP1-219ENST00000599575 CFAP161Q6P656 301 aa10.95□□□□□ -0.66
SHKBP1-219ENST00000599575 Q8N814 137 aa10.95□□□□□ -0.66
SHKBP1-219ENST00000599575 FAM104AQ969W3 186 aa10.95□□□□□ -0.66
SHKBP1-219ENST00000599575 SCGB3A1Q96QR1 104 aa10.95□□□□□ -0.66
SHKBP1-219ENST00000599575 C2orf88Q9BSF0 95 aa10.95□□□□□ -0.66
SHKBP1-219ENST00000599575 VCX2Q9H322 139 aa10.95□□□□□ -0.66
SHKBP1-219ENST00000599575 IFITM10A6NMD0 228 aa10.94□□□□□ -0.66
SHKBP1-219ENST00000599575 HBDP02042 147 aa10.94□□□□□ -0.66
SHKBP1-219ENST00000599575 BAGE3Q86Y29 109 aa10.94□□□□□ -0.66
SHKBP1-219ENST00000599575 BAALCQ8WXS3 180 aa10.94□□□□□ -0.66
SHKBP1-219ENST00000599575 URB1-AS1Q96HZ7 61 aa10.94□□□□□ -0.66
SHKBP1-219ENST00000599575 AMELXQ99217 191 aa10.94□□□□□ -0.66
SHKBP1-219ENST00000599575 TRAV13-1A0A0B4J241 112 aa10.93□□□□□ -0.66
SHKBP1-219ENST00000599575 GAGE12HA6NDE8 117 aa10.93□□□□□ -0.66
SHKBP1-219ENST00000599575 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.92□□□□□ -0.66
SHKBP1-219ENST00000599575 XCL1P47992 114 aa10.92□□□□□ -0.66
SHKBP1-219ENST00000599575 SEC11AP67812 179 aa10.92□□□□□ -0.66
SHKBP1-219ENST00000599575 OPRPNQ99935 248 aaPredicted RBP10.92□□□□□ -0.66
SHKBP1-219ENST00000599575 PKD1P98161 4303 aa10.91□□□□□ -0.66
SHKBP1-219ENST00000599575 USP17L23D6RBM5 183 aa10.91□□□□□ -0.66
SHKBP1-219ENST00000599575 HSBP1O75506 76 aa10.91□□□□□ -0.66
SHKBP1-219ENST00000599575 FOXI1Q12951 378 aa10.91□□□□□ -0.66
SHKBP1-219ENST00000599575 RNASE13Q5GAN3 156 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-219ENST00000599575 SPATA12Q7Z6I5 190 aa10.91□□□□□ -0.66
SHKBP1-219ENST00000599575 A0A096LNJ9 63 aa10.9□□□□□ -0.66
SHKBP1-219ENST00000599575 ATP5LO75964 103 aa10.9□□□□□ -0.66
SHKBP1-219ENST00000599575 FAM19A3Q7Z5A8 133 aa10.9□□□□□ -0.66
SHKBP1-219ENST00000599575 COX7A2LO14548 114 aa10.89□□□□□ -0.67
SHKBP1-219ENST00000599575 PDZD11Q5EBL8 140 aa10.89□□□□□ -0.67
SHKBP1-219ENST00000599575 LECT2O14960 151 aa10.88□□□□□ -0.67
SHKBP1-219ENST00000599575 UBE2D1P51668 147 aa10.88□□□□□ -0.67
SHKBP1-219ENST00000599575 WFDC2Q14508 124 aa10.88□□□□□ -0.67
SHKBP1-219ENST00000599575 LINC00173Q6ZV60 143 aa10.88□□□□□ -0.67
SHKBP1-219ENST00000599575 EPPK1P58107 5090 aaKnown RBP10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 IGHV3OR16-9A0A0B4J2B5 98 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 IGHV1-58A0A0C4DH39 117 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST1H2BKO60814 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 APOMO95445 188 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST1H2BJP06899 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST1H2BOP23527 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST1H2BBP33778 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST1H2BDP58876 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 KRTAP10-2P60368 255 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST1H2BCP62807 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 PMVKQ15126 192 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST2H2BEQ16778 126 aa10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.87□□□□□ -0.67
SHKBP1-219ENST00000599575 HIST1H2BHQ93079 126 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 134.8 ms