RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 TAL2Q16559 108 aa10.24□□□□□ -0.77
VRK3-217ENST00000599538 FBN1P35555 2871 aaKnown RBP10.23□□□□□ -0.77
VRK3-217ENST00000599538 TRAV8-3A0A0A6YYJ7 113 aa10.23□□□□□ -0.77
VRK3-217ENST00000599538 A0A0J9YY99 117 aa10.23□□□□□ -0.77
VRK3-217ENST00000599538 CRYBA4P53673 196 aa10.23□□□□□ -0.77
VRK3-217ENST00000599538 SMIM13P0DJ93 91 aa10.22□□□□□ -0.77
VRK3-217ENST00000599538 DAZ4Q86SG3 579 aaKnown RBP10.22□□□□□ -0.77
VRK3-217ENST00000599538 DAZ3Q9NR90 486 aaKnown RBP10.22□□□□□ -0.77
VRK3-217ENST00000599538 TRBV6-4A0A1B0GX49 114 aa10.22□□□□□ -0.77
VRK3-217ENST00000599538 LEPROTO15243 131 aa10.22□□□□□ -0.77
VRK3-217ENST00000599538 DEFB135Q30KP9 77 aa10.22□□□□□ -0.77
VRK3-217ENST00000599538 SBSPONQ8IVN8 264 aa10.22□□□□□ -0.77
VRK3-217ENST00000599538 A8MZ25 164 aa10.21□□□□□ -0.77
VRK3-217ENST00000599538 DEFB4AO15263 64 aa10.21□□□□□ -0.77
VRK3-217ENST00000599538 LGALS3P17931 250 aaKnown RBP10.21□□□□□ -0.77
VRK3-217ENST00000599538 UBE2D1P51668 147 aa10.21□□□□□ -0.77
VRK3-217ENST00000599538 DGAT2L7PQ6IED9 249 aa10.21□□□□□ -0.78
VRK3-217ENST00000599538 WFDC9Q8NEX5 89 aa10.21□□□□□ -0.78
VRK3-217ENST00000599538 IGHV3-30-3P0DP02 117 aa10.2□□□□□ -0.78
VRK3-217ENST00000599538 C12orf74Q32Q52 190 aa10.2□□□□□ -0.78
VRK3-217ENST00000599538 TINCRA0A1B0GVN0 87 aa10.19□□□□□ -0.78
VRK3-217ENST00000599538 COX6A2Q02221 97 aa10.19□□□□□ -0.78
VRK3-217ENST00000599538 SRSF9Q13242 221 aaKnown RBP eCLIP10.19□□□□□ -0.78
VRK3-217ENST00000599538 LINC00612Q8N6U2 182 aa10.19□□□□□ -0.78
VRK3-217ENST00000599538 KIR2DL5BQ8NHK3 375 aa10.19□□□□□ -0.78
VRK3-217ENST00000599538 TIMM21Q9BVV7 248 aa10.19□□□□□ -0.78
VRK3-217ENST00000599538 STAB1Q9NY15 2570 aa10.19□□□□□ -0.78
VRK3-217ENST00000599538 SPINK8P0C7L1 97 aa10.19□□□□□ -0.78
VRK3-217ENST00000599538 C10orf126Q8N4M7 172 aa10.18□□□□□ -0.78
VRK3-217ENST00000599538 OR5A1Q8NGJ0 315 aa10.18□□□□□ -0.78
VRK3-217ENST00000599538 CDKN2A-AS1Q9UH64 79 aa10.18□□□□□ -0.78
VRK3-217ENST00000599538 A0A1W2PPM0 123 aa10.18□□□□□ -0.78
VRK3-217ENST00000599538 KRTAP24-1Q3LI83 254 aa10.18□□□□□ -0.78
VRK3-217ENST00000599538 CYSRT1A8MQ03 144 aa10.17□□□□□ -0.78
VRK3-217ENST00000599538 SAMD5Q5TGI4 173 aa10.17□□□□□ -0.78
VRK3-217ENST00000599538 FAM222AQ5U5X8 452 aa10.17□□□□□ -0.78
VRK3-217ENST00000599538 GTSF1LQ9H1H1 148 aa10.17□□□□□ -0.78
VRK3-217ENST00000599538 PKD1L1Q8TDX9 2849 aa10.17□□□□□ -0.78
VRK3-217ENST00000599538 CIDEAO60543 219 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 LINC00242Q5T6M2 205 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 GEMIN7Q9H840 131 aaKnown RBP10.16□□□□□ -0.78
VRK3-217ENST00000599538 CDC42SE2Q9NRR3 84 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 TRAV13-1A0A0B4J241 112 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 IGHV1-58A0A0C4DH39 117 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 GAGE10A6NGK3 116 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 IGHV3-30P01768 117 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 IGHV3-30-5P0DP03 117 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 TMEM243Q9BU79 118 aa10.16□□□□□ -0.78
VRK3-217ENST00000599538 CSDC2Q9Y534 153 aaKnown RBP10.16□□□□□ -0.78
VRK3-217ENST00000599538 A0A1B0GWB2 263 aa10.15□□□□□ -0.78
VRK3-217ENST00000599538 SMIM9A6NGZ8 99 aa10.15□□□□□ -0.78
VRK3-217ENST00000599538 IGLL5B9A064 214 aa10.15□□□□□ -0.78
VRK3-217ENST00000599538 OXLD1Q5BKU9 147 aa10.15□□□□□ -0.78
VRK3-217ENST00000599538 VSIG2Q96IQ7 327 aa10.15□□□□□ -0.78
VRK3-217ENST00000599538 IGHV4-30-4P0DP06 118 aa10.15□□□□□ -0.79
VRK3-217ENST00000599538 SPANXB1Q9NS25 103 aaPredicted RBP10.15□□□□□ -0.79
VRK3-217ENST00000599538 IGHV4-28A0A0C4DH34 117 aa10.14□□□□□ -0.79
VRK3-217ENST00000599538 WIPF1O43516 503 aa10.14□□□□□ -0.79
VRK3-217ENST00000599538 IGLV5-45A0A087WSX0 123 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 A0A0J9YXY3 114 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 K7EP34 96 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 APOC4P55056 127 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 TIRAPP58753 221 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 GAGE6Q13070 117 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 TRBV6-8A0A0A6YYG3 113 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 UBE2L6O14933 153 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 GYPEP15421 78 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 TMEM101Q96IK0 257 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 SPCS1Q9Y6A9 102 aa10.13□□□□□ -0.79
VRK3-217ENST00000599538 IGLV4-60A0A075B6I1 120 aa10.12□□□□□ -0.79
VRK3-217ENST00000599538 A0A096LPF7 62 aa10.12□□□□□ -0.79
VRK3-217ENST00000599538 NDUFA12Q9UI09 145 aa10.12□□□□□ -0.79
VRK3-217ENST00000599538 CELA1Q9UNI1 258 aa10.12□□□□□ -0.79
VRK3-217ENST00000599538 BAHCC1Q9P281 2608 aa10.12□□□□□ -0.79
VRK3-217ENST00000599538 APOMO95445 188 aa10.12□□□□□ -0.79
VRK3-217ENST00000599538 FABP2P12104 132 aa10.12□□□□□ -0.79
VRK3-217ENST00000599538 LITAFQ99732 161 aa10.12□□□□□ -0.79
VRK3-217ENST00000599538 Q8NAQ8 132 aa10.11□□□□□ -0.79
VRK3-217ENST00000599538 MAST4O15021 2626 aa10.11□□□□□ -0.79
VRK3-217ENST00000599538 EIF4EBP3O60516 100 aaPredicted RBP10.1□□□□□ -0.79
VRK3-217ENST00000599538 KRTAP10-11P60412 298 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 ADAMTSL4-AS1Q5T5F5 129 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 LYRM9A8MSI8 78 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 CFC1BP0CG36 223 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 CFC1P0CG37 223 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 HERVK_113P63121 156 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 GTF2H5Q6ZYL4 71 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 FAM19A3Q7Z5A8 133 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 CHCHD5Q9BSY4 110 aa10.1□□□□□ -0.79
VRK3-217ENST00000599538 IGKV3OR2-268A0A0C4DH90 116 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 ZFAND6Q6FIF0 208 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 MUSTN1Q8IVN3 82 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 ATP6V0E2Q8NHE4 81 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 PGPEP1Q9NXJ5 209 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 PRO0255Q9UI72 69 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 TMEM238LA0A1B0GVL6 79 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 A6NJY4 79 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 SMIM1B2RUZ4 78 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 SFTA2Q6UW10 78 aa10.09□□□□□ -0.79
VRK3-217ENST00000599538 A4D1N5 150 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms