RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ADIRFQ15847 76 aa7.91□□□□□ -1.14
TRIM28-212ENST00000597995 C15orf56Q8N910 161 aa7.91□□□□□ -1.14
TRIM28-212ENST00000597995 ST20Q9HBF5 79 aa7.91□□□□□ -1.14
TRIM28-212ENST00000597995 NAT8Q9UHE5 227 aa7.91□□□□□ -1.14
TRIM28-212ENST00000597995 LRP2P98164 4655 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 TRBV27A0A0K0K1C4 114 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 SMIM27A0A1W2PRY6 76 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 RAB14P61106 215 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 RIGQ13278 110 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 AMMECR1LQ6DCA0 310 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 RNASEKQ6P5S7 137 aaKnown RBP7.9□□□□□ -1.14
TRIM28-212ENST00000597995 CFAP161Q6P656 301 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 NRACQ8N912 160 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 C7orf33Q8WU49 177 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 MRAP2Q96G30 205 aa7.9□□□□□ -1.14
TRIM28-212ENST00000597995 TNXBP22105 4242 aa7.89□□□□□ -1.15
TRIM28-212ENST00000597995 PHOX2AO14813 284 aa7.89□□□□□ -1.15
TRIM28-212ENST00000597995 CHCHD10Q8WYQ3 142 aaPredicted RBP7.89□□□□□ -1.15
TRIM28-212ENST00000597995 LINC01600Q96MT4 127 aa7.89□□□□□ -1.15
TRIM28-212ENST00000597995 SMDT1Q9H4I9 107 aa7.89□□□□□ -1.15
TRIM28-212ENST00000597995 NAT8BQ9UHF3 227 aa7.89□□□□□ -1.15
TRIM28-212ENST00000597995 ZNF25P17030 456 aaPredicted RBP7.88□□□□□ -1.15
TRIM28-212ENST00000597995 MRPL51Q4U2R6 128 aaKnown RBP7.88□□□□□ -1.15
TRIM28-212ENST00000597995 FAM104BQ5XKR9 115 aa7.88□□□□□ -1.15
TRIM28-212ENST00000597995 COX6A2Q02221 97 aa7.87□□□□□ -1.15
TRIM28-212ENST00000597995 FOXI1Q12951 378 aa7.87□□□□□ -1.15
TRIM28-212ENST00000597995 MRPL52Q86TS9 123 aaKnown RBP7.87□□□□□ -1.15
TRIM28-212ENST00000597995 OR5A1Q8NGJ0 315 aa7.87□□□□□ -1.15
TRIM28-212ENST00000597995 CDC42SE2Q9NRR3 84 aa7.87□□□□□ -1.15
TRIM28-212ENST00000597995 LINC00959A0A1B0GUT2 108 aa7.86□□□□□ -1.15
TRIM28-212ENST00000597995 VCYO14598 125 aa7.86□□□□□ -1.15
TRIM28-212ENST00000597995 CAMPP49913 170 aa7.86□□□□□ -1.15
TRIM28-212ENST00000597995 SUMO2P61956 95 aaKnown RBP7.86□□□□□ -1.15
TRIM28-212ENST00000597995 HIGD2BQ4VC39 106 aa7.86□□□□□ -1.15
TRIM28-212ENST00000597995 A0A1B0GXF2 115 aa7.85□□□□□ -1.15
TRIM28-212ENST00000597995 C7orf77A4D0Y5 90 aa7.85□□□□□ -1.15
TRIM28-212ENST00000597995 PPP1R17O96001 155 aa7.85□□□□□ -1.15
TRIM28-212ENST00000597995 GVQW2A0A096LPI5 108 aaPredicted RBP7.84□□□□□ -1.15
TRIM28-212ENST00000597995 CCL25O15444 150 aa7.84□□□□□ -1.15
TRIM28-212ENST00000597995 XCL1P47992 114 aa7.84□□□□□ -1.15
TRIM28-212ENST00000597995 PRR3P79522 188 aaKnown RBP7.84□□□□□ -1.15
TRIM28-212ENST00000597995 MAJINQ3KP22 176 aa7.84□□□□□ -1.15
TRIM28-212ENST00000597995 MRPL54Q6P161 138 aaKnown RBP7.84□□□□□ -1.15
TRIM28-212ENST00000597995 ZNF664Q8N3J9 261 aa7.84□□□□□ -1.15
TRIM28-212ENST00000597995 PRSS3P2Q8NHM4 247 aa7.84□□□□□ -1.15
TRIM28-212ENST00000597995 TMEM101Q96IK0 257 aa7.84□□□□□ -1.15
TRIM28-212ENST00000597995 BTF3L4Q96K17 158 aa7.84□□□□□ -1.15
TRIM28-212ENST00000597995 TRBV24-1A0A075B6N3 115 aa7.83□□□□□ -1.16
TRIM28-212ENST00000597995 A0A0J9YXV3 536 aa7.83□□□□□ -1.16
TRIM28-212ENST00000597995 STPG4Q8N801 248 aa7.83□□□□□ -1.16
TRIM28-212ENST00000597995 UBE2D4Q9Y2X8 147 aa7.83□□□□□ -1.16
TRIM28-212ENST00000597995 IGKV2-24A0A0C4DH68 120 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 A0A1B0GW15 77 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 LINC00862A6NCI5 91 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 FCER1GP30273 86 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 KRTAP10-8P60410 259 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 HBBP68871 147 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 SPINK6Q6UWN8 80 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 FAM104AQ969W3 186 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 LINC00526Q96FQ7 95 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 LINC00474Q9P2X8 69 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 PKIGQ9Y2B9 76 aa7.82□□□□□ -1.16
TRIM28-212ENST00000597995 CSDC2Q9Y534 153 aaKnown RBP7.82□□□□□ -1.16
TRIM28-212ENST00000597995 D6R8Y8 96 aa7.81□□□□□ -1.16
TRIM28-212ENST00000597995 PPP1R2P9O14990 202 aa7.81□□□□□ -1.16
TRIM28-212ENST00000597995 TNFRSF6BO95407 300 aa7.81□□□□□ -1.16
TRIM28-212ENST00000597995 CKS2P33552 79 aa7.81□□□□□ -1.16
TRIM28-212ENST00000597995 RPL32P62910 135 aaKnown RBP7.81□□□□□ -1.16
TRIM28-212ENST00000597995 SMAGPQ0VAQ4 97 aa7.81□□□□□ -1.16
TRIM28-212ENST00000597995 RNASE13Q5GAN3 156 aaKnown RBP7.81□□□□□ -1.16
TRIM28-212ENST00000597995 REG3GQ6UW15 175 aa7.81□□□□□ -1.16
TRIM28-212ENST00000597995 KIR2DL4Q99706 377 aa7.81□□□□□ -1.16
TRIM28-212ENST00000597995 C20orf78Q9BR46 151 aa7.81□□□□□ -1.16
TRIM28-212ENST00000597995 NPYP01303 97 aa7.8□□□□□ -1.16
TRIM28-212ENST00000597995 SS18Q15532 418 aa7.8□□□□□ -1.16
TRIM28-212ENST00000597995 CD164L2Q6UWJ8 174 aa7.8□□□□□ -1.16
TRIM28-212ENST00000597995 Q6ZUT4 128 aa7.8□□□□□ -1.16
TRIM28-212ENST00000597995 A0A096LNI7 61 aa7.79□□□□□ -1.16
TRIM28-212ENST00000597995 IGHV1-58A0A0C4DH39 117 aa7.79□□□□□ -1.16
TRIM28-212ENST00000597995 S100A8P05109 93 aa7.79□□□□□ -1.16
TRIM28-212ENST00000597995 RPL39P62891 51 aaKnown RBP7.79□□□□□ -1.16
TRIM28-212ENST00000597995 SRSF9Q13242 221 aaKnown RBP eCLIP7.79□□□□□ -1.16
TRIM28-212ENST00000597995 SMIM2Q9BVW6 85 aa7.79□□□□□ -1.16
TRIM28-212ENST00000597995 RNF213Q63HN8 5207 aa7.79□□□□□ -1.16
TRIM28-212ENST00000597995 F8W036 122 aa7.78□□□□□ -1.16
TRIM28-212ENST00000597995 TCAPO15273 167 aa7.78□□□□□ -1.16
TRIM28-212ENST00000597995 TIMM21Q9BVV7 248 aa7.78□□□□□ -1.16
TRIM28-212ENST00000597995 TRAV13-1A0A0B4J241 112 aa7.77□□□□□ -1.17
TRIM28-212ENST00000597995 ODF1Q14990 250 aa7.77□□□□□ -1.17
TRIM28-212ENST00000597995 Q6ZRP5 223 aa7.77□□□□□ -1.17
TRIM28-212ENST00000597995 ATP5L2Q7Z4Y8 100 aa7.77□□□□□ -1.17
TRIM28-212ENST00000597995 OPRPNQ99935 248 aaPredicted RBP7.77□□□□□ -1.17
TRIM28-212ENST00000597995 C1orf196B1AJZ1 125 aa7.76□□□□□ -1.17
TRIM28-212ENST00000597995 PPBPP02775 128 aa7.76□□□□□ -1.17
TRIM28-212ENST00000597995 IFITM2Q01629 132 aa7.76□□□□□ -1.17
TRIM28-212ENST00000597995 TMEM136Q6ZRR5 245 aa7.76□□□□□ -1.17
TRIM28-212ENST00000597995 TMEM18Q96B42 140 aa7.76□□□□□ -1.17
TRIM28-212ENST00000597995 MT-ND4LP03901 98 aa7.75□□□□□ -1.17
TRIM28-212ENST00000597995 PNRC1Q12796 327 aaPredicted RBP7.75□□□□□ -1.17
TRIM28-212ENST00000597995 CLLU1Q5K131 121 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms