RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 NPC2P61916 151 aa10.75□□□□□ -0.69
SMARCA4-219ENST00000592604 BEAN1Q3B7T3 259 aa10.75□□□□□ -0.69
SMARCA4-219ENST00000592604 LINC01356Q8N9X3 169 aa10.75□□□□□ -0.69
SMARCA4-219ENST00000592604 C11orf72Q8NBR9 251 aa10.75□□□□□ -0.69
SMARCA4-219ENST00000592604 CDKN2A-AS1Q9UH64 79 aa10.75□□□□□ -0.69
SMARCA4-219ENST00000592604 C15orf53Q8NAA6 179 aa10.74□□□□□ -0.69
SMARCA4-219ENST00000592604 CLEC2BQ92478 149 aa10.74□□□□□ -0.69
SMARCA4-219ENST00000592604 ZNF702PQ9H963 129 aa10.74□□□□□ -0.69
SMARCA4-219ENST00000592604 NCOR2Q9Y618 2525 aa10.74□□□□□ -0.69
SMARCA4-219ENST00000592604 LRRC75A-AS1Q8N1F1 130 aa10.74□□□□□ -0.69
SMARCA4-219ENST00000592604 FAM240AA0A1B0GVK7 77 aa10.73□□□□□ -0.69
SMARCA4-219ENST00000592604 CREBBPQ92793 2442 aa10.73□□□□□ -0.69
SMARCA4-219ENST00000592604 RS1O15537 224 aa10.73□□□□□ -0.69
SMARCA4-219ENST00000592604 CRYBG3Q68DQ2 2970 aa10.73□□□□□ -0.69
SMARCA4-219ENST00000592604 IGHV3-38A0A0C4DH36 116 aa10.72□□□□□ -0.69
SMARCA4-219ENST00000592604 SLURP1P55000 103 aa10.72□□□□□ -0.69
SMARCA4-219ENST00000592604 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.72□□□□□ -0.69
SMARCA4-219ENST00000592604 IGLV5-39A0A0G2JS06 123 aa10.71□□□□□ -0.69
SMARCA4-219ENST00000592604 CIRBPQ14011 172 aaKnown RBP10.71□□□□□ -0.69
SMARCA4-219ENST00000592604 SPTBN4Q9H254 2564 aa10.71□□□□□ -0.69
SMARCA4-219ENST00000592604 MAP1AP78559 2803 aaPredicted RBP10.71□□□□□ -0.69
SMARCA4-219ENST00000592604 DAND5Q8N907 189 aa10.71□□□□□ -0.69
SMARCA4-219ENST00000592604 CELSR2Q9HCU4 2923 aa10.71□□□□□ -0.7
SMARCA4-219ENST00000592604 A0A096LNT2 108 aa10.71□□□□□ -0.7
SMARCA4-219ENST00000592604 Q6YL49 198 aa10.71□□□□□ -0.7
SMARCA4-219ENST00000592604 FAM19A3Q7Z5A8 133 aa10.71□□□□□ -0.7
SMARCA4-219ENST00000592604 IGHV3OR16-12A0A075B7B8 117 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 COX6A2Q02221 97 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 HRCT1Q6UXD1 115 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 LINC00308Q8TCZ7 52 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 CHD8Q9HCK8 2581 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 ITPR1Q14643 2758 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 HERVK_113P63121 156 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 C18orf65Q6ZTR6 163 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 MAP6D1Q9H9H5 199 aa10.7□□□□□ -0.7
SMARCA4-219ENST00000592604 DEFB136Q30KP8 78 aa10.69□□□□□ -0.7
SMARCA4-219ENST00000592604 DGAT2L7PQ6IED9 249 aa10.69□□□□□ -0.7
SMARCA4-219ENST00000592604 CHCHD5Q9BSY4 110 aa10.69□□□□□ -0.7
SMARCA4-219ENST00000592604 KLK5Q9Y337 293 aaPredicted RBP10.69□□□□□ -0.7
SMARCA4-219ENST00000592604 FSHBP01225 129 aa10.68□□□□□ -0.7
SMARCA4-219ENST00000592604 C4orf26Q17RF5 130 aa10.68□□□□□ -0.7
SMARCA4-219ENST00000592604 LINC00242Q5T6M2 205 aa10.68□□□□□ -0.7
SMARCA4-219ENST00000592604 PEMTQ9UBM1 199 aa10.68□□□□□ -0.7
SMARCA4-219ENST00000592604 INSP01308 110 aa10.68□□□□□ -0.7
SMARCA4-219ENST00000592604 Q9H8V8 135 aa10.68□□□□□ -0.7
SMARCA4-219ENST00000592604 C1orf43Q9BWL3 253 aa10.68□□□□□ -0.7
SMARCA4-219ENST00000592604 COPS9Q8WXC6 57 aa10.67□□□□□ -0.7
SMARCA4-219ENST00000592604 COX7A2LO14548 114 aa10.66□□□□□ -0.7
SMARCA4-219ENST00000592604 SMIM1B2RUZ4 78 aa10.65□□□□□ -0.7
SMARCA4-219ENST00000592604 Q8N2B8 174 aa10.65□□□□□ -0.7
SMARCA4-219ENST00000592604 NDUFA7O95182 113 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 C9orf153Q5TBE3 101 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 SOSTDC1Q6X4U4 206 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 DEFB114Q30KQ6 69 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 DOPEY1Q5JWR5 2465 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 TRBV7-7A0A0K0K1E9 115 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 A0A1B0GX51 115 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 IL17DQ8TAD2 202 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 ZNF625Q96I27 306 aaPredicted RBP10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 PKIGQ9Y2B9 76 aa10.64□□□□□ -0.71
SMARCA4-219ENST00000592604 ACYP1P07311 99 aa10.63□□□□□ -0.71
SMARCA4-219ENST00000592604 C4orf3Q8WVX3 66 aa10.63□□□□□ -0.71
SMARCA4-219ENST00000592604 DYNLRB2Q8TF09 96 aa10.63□□□□□ -0.71
SMARCA4-219ENST00000592604 RPL35AP18077 110 aaKnown RBP10.62□□□□□ -0.71
SMARCA4-219ENST00000592604 MAPK1IP1LQ8NDC0 245 aa10.62□□□□□ -0.71
SMARCA4-219ENST00000592604 TRBV10-1A0A0K0K1A3 114 aa10.62□□□□□ -0.71
SMARCA4-219ENST00000592604 FAM236AA0A1B0GUQ0 79 aa10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 FAM236BA0A1B0GV22 79 aa10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 TRACP01848 142 aa10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 DAZ2Q13117 558 aaKnown RBP10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 NTM-AS1Q6ZSK4 140 aa10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 DAZ4Q86SG3 579 aaKnown RBP10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 DAZ3Q9NR90 486 aaKnown RBP10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 A0A0U1RRA0 63 aa10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 RPL36AP83881 106 aaKnown RBP10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 C1orf158Q8N1D5 194 aa10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 RPL36ALQ969Q0 106 aaKnown RBP10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 CDC42SE2Q9NRR3 84 aa10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 XCL2Q9UBD3 114 aa10.61□□□□□ -0.71
SMARCA4-219ENST00000592604 PRIMA1Q86XR5 153 aa10.6□□□□□ -0.71
SMARCA4-219ENST00000592604 USP9YO00507 2555 aaPredicted RBP10.6□□□□□ -0.71
SMARCA4-219ENST00000592604 TRAV13-1A0A0B4J241 112 aa10.6□□□□□ -0.71
SMARCA4-219ENST00000592604 TRGV1A0A0A0MS02 117 aa10.59□□□□□ -0.71
SMARCA4-219ENST00000592604 K7EQD1 137 aa10.59□□□□□ -0.71
SMARCA4-219ENST00000592604 ODF3L2Q3SX64 289 aa10.59□□□□□ -0.71
SMARCA4-219ENST00000592604 IMUPQ9GZP8 106 aa10.59□□□□□ -0.71
SMARCA4-219ENST00000592604 A0A1W2PRX2 142 aa10.58□□□□□ -0.72
SMARCA4-219ENST00000592604 IGHV4-31P0DP07 118 aa10.58□□□□□ -0.72
SMARCA4-219ENST00000592604 V9GYY9 64 aa10.58□□□□□ -0.72
SMARCA4-219ENST00000592604 ZANQ9Y493 2812 aa10.58□□□□□ -0.72
SMARCA4-219ENST00000592604 RPS28P62857 69 aaKnown RBP10.57□□□□□ -0.72
SMARCA4-219ENST00000592604 MXRA5Q9NR99 2828 aa10.57□□□□□ -0.72
SMARCA4-219ENST00000592604 USP9XQ93008 2570 aaPredicted RBP10.57□□□□□ -0.72
SMARCA4-219ENST00000592604 SDIM1Q6ZPB5 146 aa10.56□□□□□ -0.72
SMARCA4-219ENST00000592604 STHQ8IWL8 128 aa10.56□□□□□ -0.72
SMARCA4-219ENST00000592604 Q96MF0 132 aa10.56□□□□□ -0.72
SMARCA4-219ENST00000592604 CFAP46Q8IYW2 2715 aa10.56□□□□□ -0.72
SMARCA4-219ENST00000592604 CR1P17927 2039 aa10.56□□□□□ -0.72
SMARCA4-219ENST00000592604 BAALC-AS2P0C853 105 aa10.56□□□□□ -0.72
SMARCA4-219ENST00000592604 C22orf24Q9Y442 160 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms