RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 FOXI1Q12951 378 aa9.2□□□□□ -0.94
SMARCE1-216ENST00000580419 RNASEKQ6P5S7 137 aaKnown RBP9.2□□□□□ -0.94
SMARCE1-216ENST00000580419 SMDT1Q9H4I9 107 aa9.2□□□□□ -0.94
SMARCE1-216ENST00000580419 CDC42SE2Q9NRR3 84 aa9.19□□□□□ -0.94
SMARCE1-216ENST00000580419 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.18□□□□□ -0.94
SMARCE1-216ENST00000580419 IGHV1-58A0A0C4DH39 117 aa9.18□□□□□ -0.94
SMARCE1-216ENST00000580419 LINC00959A0A1B0GUT2 108 aa9.18□□□□□ -0.94
SMARCE1-216ENST00000580419 IGKV2-29A2NJV5 120 aaPredicted RBP9.18□□□□□ -0.94
SMARCE1-216ENST00000580419 VCYO14598 125 aa9.18□□□□□ -0.94
SMARCE1-216ENST00000580419 SRP19P09132 144 aaKnown RBP9.18□□□□□ -0.94
SMARCE1-216ENST00000580419 RIGQ13278 110 aa9.18□□□□□ -0.94
SMARCE1-216ENST00000580419 V9GYV3 84 aa9.18□□□□□ -0.94
SMARCE1-216ENST00000580419 A0A1B0GW15 77 aa9.17□□□□□ -0.94
SMARCE1-216ENST00000580419 C7orf77A4D0Y5 90 aa9.17□□□□□ -0.94
SMARCE1-216ENST00000580419 PPP1R2P9O14990 202 aa9.17□□□□□ -0.94
SMARCE1-216ENST00000580419 HNRNPA3P51991 378 aaKnown RBP9.17□□□□□ -0.94
SMARCE1-216ENST00000580419 RPL32P62910 135 aaKnown RBP9.17□□□□□ -0.94
SMARCE1-216ENST00000580419 CD164L2Q6UWJ8 174 aa9.17□□□□□ -0.94
SMARCE1-216ENST00000580419 C7orf33Q8WU49 177 aa9.17□□□□□ -0.94
SMARCE1-216ENST00000580419 LINC00862A6NCI5 91 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 TCAPO15273 167 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 COX6A2Q02221 97 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 SS18Q15532 418 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 TMEM241Q24JQ0 296 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 ZNF664Q8N3J9 261 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 NUP35Q8NFH5 326 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 ISOC2Q96AB3 205 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 TIMM21Q9BVV7 248 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 NAT8BQ9UHF3 227 aa9.16□□□□□ -0.94
SMARCE1-216ENST00000580419 TRBV24-1A0A075B6N3 115 aa9.15□□□□□ -0.94
SMARCE1-216ENST00000580419 C1orf196B1AJZ1 125 aa9.15□□□□□ -0.94
SMARCE1-216ENST00000580419 DPH3Q96FX2 82 aa9.15□□□□□ -0.94
SMARCE1-216ENST00000580419 KIR2DL4Q99706 377 aa9.15□□□□□ -0.94
SMARCE1-216ENST00000580419 IGKV3OR2-268A0A0C4DH90 116 aa9.14□□□□□ -0.95
SMARCE1-216ENST00000580419 CEBPGP53567 150 aa9.14□□□□□ -0.95
SMARCE1-216ENST00000580419 SUMO2P61956 95 aaKnown RBP9.14□□□□□ -0.95
SMARCE1-216ENST00000580419 AMN1Q8IY45 258 aa9.14□□□□□ -0.95
SMARCE1-216ENST00000580419 NRACQ8N912 160 aa9.14□□□□□ -0.95
SMARCE1-216ENST00000580419 PRSS3P2Q8NHM4 247 aa9.14□□□□□ -0.95
SMARCE1-216ENST00000580419 C20orf78Q9BR46 151 aa9.14□□□□□ -0.95
SMARCE1-216ENST00000580419 TMEM242Q9NWH2 141 aa9.14□□□□□ -0.95
SMARCE1-216ENST00000580419 SMIM27A0A1W2PRY6 76 aa9.13□□□□□ -0.95
SMARCE1-216ENST00000580419 GAS8-AS1O95177 125 aa9.13□□□□□ -0.95
SMARCE1-216ENST00000580419 CHTF8P0CG12 524 aa9.13□□□□□ -0.95
SMARCE1-216ENST00000580419 MT1HL1P0DM35 61 aa9.13□□□□□ -0.95
SMARCE1-216ENST00000580419 XCL1P47992 114 aa9.13□□□□□ -0.95
SMARCE1-216ENST00000580419 HIGD2BQ4VC39 106 aa9.13□□□□□ -0.95
SMARCE1-216ENST00000580419 FAM104BQ5XKR9 115 aa9.13□□□□□ -0.95
SMARCE1-216ENST00000580419 TMEM18Q96B42 140 aa9.13□□□□□ -0.95
SMARCE1-216ENST00000580419 RPL23P62829 140 aaKnown RBP9.12□□□□□ -0.95
SMARCE1-216ENST00000580419 NAT8Q9UHE5 227 aa9.12□□□□□ -0.95
SMARCE1-216ENST00000580419 TNXBP22105 4242 aa9.11□□□□□ -0.95
SMARCE1-216ENST00000580419 PHOX2AO14813 284 aa9.11□□□□□ -0.95
SMARCE1-216ENST00000580419 S100A8P05109 93 aa9.11□□□□□ -0.95
SMARCE1-216ENST00000580419 FCER1GP30273 86 aa9.11□□□□□ -0.95
SMARCE1-216ENST00000580419 CARD19Q96LW7 228 aa9.11□□□□□ -0.95
SMARCE1-216ENST00000580419 UBE2D4Q9Y2X8 147 aa9.11□□□□□ -0.95
SMARCE1-216ENST00000580419 hCG_2014768A0A024R1R8 64 aa9.1□□□□□ -0.95
SMARCE1-216ENST00000580419 F8WDY8 70 aa9.1□□□□□ -0.95
SMARCE1-216ENST00000580419 ZNF561-AS1K7EIQ3 104 aa9.1□□□□□ -0.95
SMARCE1-216ENST00000580419 SYCNQ0VAF6 134 aa9.1□□□□□ -0.95
SMARCE1-216ENST00000580419 PEA15Q15121 130 aa9.1□□□□□ -0.95
SMARCE1-216ENST00000580419 MAJINQ3KP22 176 aa9.1□□□□□ -0.95
SMARCE1-216ENST00000580419 STPG4Q8N801 248 aa9.1□□□□□ -0.95
SMARCE1-216ENST00000580419 C2orf48Q96LS8 159 aa9.1□□□□□ -0.95
SMARCE1-216ENST00000580419 A0A096LNI7 61 aa9.09□□□□□ -0.95
SMARCE1-216ENST00000580419 PPBPP02775 128 aa9.09□□□□□ -0.95
SMARCE1-216ENST00000580419 PRR3P79522 188 aaKnown RBP9.09□□□□□ -0.95
SMARCE1-216ENST00000580419 PLA2G2DQ9UNK4 145 aa9.09□□□□□ -0.95
SMARCE1-216ENST00000580419 COX7A2LO14548 114 aa9.08□□□□□ -0.96
SMARCE1-216ENST00000580419 CAMPP49913 170 aa9.08□□□□□ -0.96
SMARCE1-216ENST00000580419 RNF151Q2KHN1 245 aa9.08□□□□□ -0.96
SMARCE1-216ENST00000580419 MRPL51Q4U2R6 128 aaKnown RBP9.08□□□□□ -0.96
SMARCE1-216ENST00000580419 IGLV4-69A0A075B6H9 119 aa9.07□□□□□ -0.96
SMARCE1-216ENST00000580419 IGKV2-24A0A0C4DH68 120 aa9.07□□□□□ -0.96
SMARCE1-216ENST00000580419 F8W036 122 aa9.07□□□□□ -0.96
SMARCE1-216ENST00000580419 APOMO95445 188 aa9.07□□□□□ -0.96
SMARCE1-216ENST00000580419 ADIRFQ15847 76 aa9.07□□□□□ -0.96
SMARCE1-216ENST00000580419 LINC01600Q96MT4 127 aa9.07□□□□□ -0.96
SMARCE1-216ENST00000580419 LOC107984640A0A0U1RRK4 108 aa9.06□□□□□ -0.96
SMARCE1-216ENST00000580419 CKS2P33552 79 aa9.06□□□□□ -0.96
SMARCE1-216ENST00000580419 SMCPP49901 116 aaPredicted RBP9.06□□□□□ -0.96
SMARCE1-216ENST00000580419 MRPS36P82909 103 aaKnown RBP9.06□□□□□ -0.96
SMARCE1-216ENST00000580419 SPINK6Q6UWN8 80 aa9.06□□□□□ -0.96
SMARCE1-216ENST00000580419 ATP5L2Q7Z4Y8 100 aa9.06□□□□□ -0.96
SMARCE1-216ENST00000580419 SPANXA1Q9NS26 97 aa9.06□□□□□ -0.96
SMARCE1-216ENST00000580419 UBR4Q5T4S7 5183 aa9.05□□□□□ -0.96
SMARCE1-216ENST00000580419 A0A1B0GXF2 115 aa9.05□□□□□ -0.96
SMARCE1-216ENST00000580419 C9JQL5 133 aa9.05□□□□□ -0.96
SMARCE1-216ENST00000580419 MALP21145 153 aa9.05□□□□□ -0.96
SMARCE1-216ENST00000580419 PTTG1IPP53801 180 aa9.05□□□□□ -0.96
SMARCE1-216ENST00000580419 HBBP68871 147 aa9.05□□□□□ -0.96
SMARCE1-216ENST00000580419 OR10D4PQ8NGN7 298 aa9.05□□□□□ -0.96
SMARCE1-216ENST00000580419 SMIM2Q9BVW6 85 aa9.05□□□□□ -0.96
SMARCE1-216ENST00000580419 SMKR1H3BMG3 65 aa9.04□□□□□ -0.96
SMARCE1-216ENST00000580419 TNFRSF6BO95407 300 aa9.04□□□□□ -0.96
SMARCE1-216ENST00000580419 Q6ZRP5 223 aa9.04□□□□□ -0.96
SMARCE1-216ENST00000580419 PRSS47A8MTI9 375 aa9.03□□□□□ -0.96
SMARCE1-216ENST00000580419 SRSF9Q13242 221 aaKnown RBP eCLIP9.03□□□□□ -0.96
SMARCE1-216ENST00000580419 LAMTOR2Q9Y2Q5 125 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms