RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZNF25P17030 456 aaPredicted RBP6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BOP23527 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BBP33778 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BDP58876 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BCP62807 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 Q0VG73 95 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST2H2BEQ16778 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.18□□□□□ -1.42
VPS35-211ENST00000569950 Q6ZUT4 128 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 LINC00173Q6ZV60 143 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 LINC00269Q8N2A0 174 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 C6orf223Q8N319 242 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BHQ93079 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BNQ99877 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 HIST1H2BMQ99879 126 aa6.18□□□□□ -1.42
VPS35-211ENST00000569950 ANGP03950 147 aaKnown RBP6.17□□□□□ -1.42
VPS35-211ENST00000569950 BTF3P20290 206 aaKnown RBP6.17□□□□□ -1.42
VPS35-211ENST00000569950 PKIAP61925 76 aa6.17□□□□□ -1.42
VPS35-211ENST00000569950 WFDC2Q14508 124 aa6.17□□□□□ -1.42
VPS35-211ENST00000569950 C1orf134Q5TEV5 83 aa6.17□□□□□ -1.42
VPS35-211ENST00000569950 CLPSL2Q6UWE3 100 aa6.17□□□□□ -1.42
VPS35-211ENST00000569950 C2orf66Q6UXQ4 117 aa6.17□□□□□ -1.42
VPS35-211ENST00000569950 C10orf126Q8N4M7 172 aa6.17□□□□□ -1.42
VPS35-211ENST00000569950 PYGO1Q9Y3Y4 419 aa6.17□□□□□ -1.42
VPS35-211ENST00000569950 IGLV4-3A0A075B6K6 122 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 A0A1B0GVY2 172 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 LRCOL1A6NCL2 159 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 LINC00614P0C842 121 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 MRPS36P82909 103 aaKnown RBP6.16□□□□□ -1.42
VPS35-211ENST00000569950 TNP2Q05952 138 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 REG3AQ06141 175 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 ORMDL2Q53FV1 153 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 RNASE13Q5GAN3 156 aaKnown RBP6.16□□□□□ -1.42
VPS35-211ENST00000569950 ZC2HC1BQ5TFG8 222 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 PRSS3P2Q8NHM4 247 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 UBE2WQ96B02 151 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 TOMM6Q96B49 74 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 Q9HAA7 133 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 SPANXA1Q9NS26 97 aa6.16□□□□□ -1.42
VPS35-211ENST00000569950 TRAV9-2A0A087WT02 112 aa6.15□□□□□ -1.42
VPS35-211ENST00000569950 UBE2L6O14933 153 aa6.15□□□□□ -1.42
VPS35-211ENST00000569950 SERF1AO75920 110 aa6.15□□□□□ -1.42
VPS35-211ENST00000569950 PMCHL1Q16048 86 aa6.15□□□□□ -1.42
VPS35-211ENST00000569950 PDZD11Q5EBL8 140 aa6.15□□□□□ -1.42
VPS35-211ENST00000569950 RNASEKQ6P5S7 137 aaKnown RBP6.15□□□□□ -1.42
VPS35-211ENST00000569950 ZNF664Q8N3J9 261 aa6.15□□□□□ -1.42
VPS35-211ENST00000569950 AP5S1Q9NUS5 200 aa6.15□□□□□ -1.42
VPS35-211ENST00000569950 LOC100996750A0A140TA64 210 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 MIAQ16674 131 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 AMMECR1LQ6DCA0 310 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 FA2HQ7L5A8 372 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 OR5A1Q8NGJ0 315 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 AMELXQ99217 191 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 KRTAP4-6Q9BYQ5 205 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 PGPEP1Q9NXJ5 209 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 CYSLTR1Q9Y271 337 aa6.14□□□□□ -1.43
VPS35-211ENST00000569950 IGLV10-54A0A075B6I4 117 aa6.13□□□□□ -1.43
VPS35-211ENST00000569950 TRAV8-3A0A0A6YYJ7 113 aa6.13□□□□□ -1.43
VPS35-211ENST00000569950 LINC00959A0A1B0GUT2 108 aa6.13□□□□□ -1.43
VPS35-211ENST00000569950 COA6Q5JTJ3 125 aaKnown RBP6.13□□□□□ -1.43
VPS35-211ENST00000569950 CHCHD1Q96BP2 118 aaKnown RBP6.13□□□□□ -1.43
VPS35-211ENST00000569950 TIMM17AQ99595 171 aa6.13□□□□□ -1.43
VPS35-211ENST00000569950 LRP1BQ9NZR2 4599 aa6.13□□□□□ -1.43
VPS35-211ENST00000569950 NPSP0C0P6 89 aa6.12□□□□□ -1.43
VPS35-211ENST00000569950 ERASQ7Z444 233 aa6.12□□□□□ -1.43
VPS35-211ENST00000569950 FAM19A2Q8N3H0 131 aa6.12□□□□□ -1.43
VPS35-211ENST00000569950 IGKV2D-24A0A075B6R9 120 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 A0A087WTM6 91 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 TRAV8-4A0A0B4J246 113 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 HBDP02042 147 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 FOXI1Q12951 378 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 FAM19A3Q7Z5A8 133 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 NFE4Q86UQ8 179 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 CHCHD10Q8WYQ3 142 aaPredicted RBP6.11□□□□□ -1.43
VPS35-211ENST00000569950 TMEM18Q96B42 140 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 TMEM141Q96I45 108 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 TMEM101Q96IK0 257 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 DNAH8Q96JB1 4490 aa6.11□□□□□ -1.43
VPS35-211ENST00000569950 IGKV3OR2-268A0A0C4DH90 116 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 PRSS29PA6NIE9 313 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 CRPP02741 224 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 UBE2D1P51668 147 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 KRTAP10-2P60368 255 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 RAB5BP61020 215 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 COX6A2Q02221 97 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 LINC00242Q5T6M2 205 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 DGAT2L7PQ6IED9 249 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 BAGE3Q86Y29 109 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 C15orf56Q8N910 161 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 NTN5Q8WTR8 489 aaPredicted RBP6.1□□□□□ -1.43
VPS35-211ENST00000569950 BAALCQ8WXS3 180 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 SCGB3A1Q96QR1 104 aa6.1□□□□□ -1.43
VPS35-211ENST00000569950 TRAV13-1A0A0B4J241 112 aa6.09□□□□□ -1.43
VPS35-211ENST00000569950 IGHV3OR16-9A0A0B4J2B5 98 aa6.09□□□□□ -1.43
VPS35-211ENST00000569950 GAGE12HA6NDE8 117 aa6.09□□□□□ -1.43
VPS35-211ENST00000569950 CCL25O15444 150 aa6.09□□□□□ -1.43
VPS35-211ENST00000569950 LINC00336Q6ZUF6 198 aa6.09□□□□□ -1.43
VPS35-211ENST00000569950 C1orf43Q9BWL3 253 aa6.09□□□□□ -1.43
VPS35-211ENST00000569950 APOBP04114 4563 aaKnown RBP6.09□□□□□ -1.44
VPS35-211ENST00000569950 BIRC6Q9NR09 4857 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms