RNA–Protein interactions for RNA: ENST00000563854.1

NME3-205, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 5

Gene NME3, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-205ENST00000563854 LINC00959A0A1B0GUT2 108 aa11.26□□□□□ -0.61
NME3-205ENST00000563854 C7orf77A4D0Y5 90 aa11.26□□□□□ -0.61
NME3-205ENST00000563854 C9JQL5 133 aa11.26□□□□□ -0.61
NME3-205ENST00000563854 CIRBPQ14011 172 aaKnown RBP11.26□□□□□ -0.61
NME3-205ENST00000563854 FAM74A3Q4VXF1 159 aa11.26□□□□□ -0.61
NME3-205ENST00000563854 SPACA4Q8TDM5 124 aa11.26□□□□□ -0.61
NME3-205ENST00000563854 NAT8BQ9UHF3 227 aa11.26□□□□□ -0.61
NME3-205ENST00000563854 IGKV2-24A0A0C4DH68 120 aa11.25□□□□□ -0.61
NME3-205ENST00000563854 TRBV27A0A0K0K1C4 114 aa11.25□□□□□ -0.61
NME3-205ENST00000563854 POLR2KP53803 58 aaKnown RBP11.25□□□□□ -0.61
NME3-205ENST00000563854 COX6A2Q02221 97 aa11.25□□□□□ -0.61
NME3-205ENST00000563854 NAT8Q9UHE5 227 aa11.25□□□□□ -0.61
NME3-205ENST00000563854 GVQW2A0A096LPI5 108 aaPredicted RBP11.24□□□□□ -0.61
NME3-205ENST00000563854 OXTP01178 125 aa11.24□□□□□ -0.61
NME3-205ENST00000563854 CAMPP49913 170 aa11.24□□□□□ -0.61
NME3-205ENST00000563854 SRSF3P84103 164 aaKnown RBP11.24□□□□□ -0.61
NME3-205ENST00000563854 SS18Q15532 418 aa11.24□□□□□ -0.61
NME3-205ENST00000563854 LRP1Q07954 4544 aaKnown RBP11.23□□□□□ -0.61
NME3-205ENST00000563854 VCYO14598 125 aa11.23□□□□□ -0.61
NME3-205ENST00000563854 PEA15Q15121 130 aa11.23□□□□□ -0.61
NME3-205ENST00000563854 MAJINQ3KP22 176 aa11.23□□□□□ -0.61
NME3-205ENST00000563854 MRPL52Q86TS9 123 aaKnown RBP11.23□□□□□ -0.61
NME3-205ENST00000563854 PRSS3P2Q8NHM4 247 aa11.23□□□□□ -0.61
NME3-205ENST00000563854 LINC00526Q96FQ7 95 aa11.23□□□□□ -0.61
NME3-205ENST00000563854 SUMO2P61956 95 aaKnown RBP11.22□□□□□ -0.61
NME3-205ENST00000563854 MRPL51Q4U2R6 128 aaKnown RBP11.22□□□□□ -0.61
NME3-205ENST00000563854 ZNF664Q8N3J9 261 aa11.22□□□□□ -0.61
NME3-205ENST00000563854 NRACQ8N912 160 aa11.22□□□□□ -0.61
NME3-205ENST00000563854 KIR2DL4Q99706 377 aa11.22□□□□□ -0.61
NME3-205ENST00000563854 CDC42SE2Q9NRR3 84 aa11.22□□□□□ -0.61
NME3-205ENST00000563854 PKHD1L1Q86WI1 4243 aa11.21□□□□□ -0.61
NME3-205ENST00000563854 IGHV1-58A0A0C4DH39 117 aa11.21□□□□□ -0.61
NME3-205ENST00000563854 PPP1R17O96001 155 aa11.21□□□□□ -0.61
NME3-205ENST00000563854 RNASE13Q5GAN3 156 aaKnown RBP11.21□□□□□ -0.61
NME3-205ENST00000563854 SMIM27A0A1W2PRY6 76 aa11.2□□□□□ -0.62
NME3-205ENST00000563854 FAM104BQ5XKR9 115 aa11.2□□□□□ -0.62
NME3-205ENST00000563854 FAT3Q8TDW7 4589 aa11.19□□□□□ -0.62
NME3-205ENST00000563854 PPP1R2P9O14990 202 aa11.19□□□□□ -0.62
NME3-205ENST00000563854 MRPL54Q6P161 138 aaKnown RBP11.19□□□□□ -0.62
NME3-205ENST00000563854 C7orf33Q8WU49 177 aa11.19□□□□□ -0.62
NME3-205ENST00000563854 CARD19Q96LW7 228 aa11.19□□□□□ -0.62
NME3-205ENST00000563854 PLAC8Q9NZF1 115 aa11.19□□□□□ -0.62
NME3-205ENST00000563854 A0A096LNI7 61 aa11.18□□□□□ -0.62
NME3-205ENST00000563854 PHOX2AO14813 284 aa11.18□□□□□ -0.62
NME3-205ENST00000563854 CKS2P33552 79 aa11.18□□□□□ -0.62
NME3-205ENST00000563854 SMAGPQ0VAQ4 97 aa11.18□□□□□ -0.62
NME3-205ENST00000563854 CD164L2Q6UWJ8 174 aa11.18□□□□□ -0.62
NME3-205ENST00000563854 STPG4Q8N801 248 aa11.18□□□□□ -0.62
NME3-205ENST00000563854 UBE2D4Q9Y2X8 147 aa11.18□□□□□ -0.62
NME3-205ENST00000563854 TRAV13-1A0A0B4J241 112 aa11.17□□□□□ -0.62
NME3-205ENST00000563854 ZNF561-AS1K7EIQ3 104 aa11.17□□□□□ -0.62
NME3-205ENST00000563854 MALP21145 153 aa11.17□□□□□ -0.62
NME3-205ENST00000563854 Q6ZUT4 128 aa11.17□□□□□ -0.62
NME3-205ENST00000563854 A0A1B0GW15 77 aa11.16□□□□□ -0.62
NME3-205ENST00000563854 LINC00862A6NCI5 91 aa11.15□□□□□ -0.62
NME3-205ENST00000563854 C1orf196B1AJZ1 125 aa11.15□□□□□ -0.62
NME3-205ENST00000563854 COX7A2LO14548 114 aa11.15□□□□□ -0.62
NME3-205ENST00000563854 HBBP68871 147 aa11.15□□□□□ -0.62
NME3-205ENST00000563854 TMEM18Q96B42 140 aa11.15□□□□□ -0.62
NME3-205ENST00000563854 SMDT1Q9H4I9 107 aa11.15□□□□□ -0.62
NME3-205ENST00000563854 D6R8Y8 96 aa11.14□□□□□ -0.63
NME3-205ENST00000563854 F8W036 122 aa11.14□□□□□ -0.63
NME3-205ENST00000563854 TNFRSF6BO95407 300 aa11.14□□□□□ -0.63
NME3-205ENST00000563854 S100A8P05109 93 aa11.14□□□□□ -0.63
NME3-205ENST00000563854 SYCNQ0VAF6 134 aa11.14□□□□□ -0.63
NME3-205ENST00000563854 SERTAD4-AS1Q5TG53 156 aa11.14□□□□□ -0.63
NME3-205ENST00000563854 C20orf78Q9BR46 151 aa11.14□□□□□ -0.63
NME3-205ENST00000563854 PKIGQ9Y2B9 76 aa11.14□□□□□ -0.63
NME3-205ENST00000563854 CSDC2Q9Y534 153 aaKnown RBP11.14□□□□□ -0.63
NME3-205ENST00000563854 SMIM2Q9BVW6 85 aa11.13□□□□□ -0.63
NME3-205ENST00000563854 IGLV4-69A0A075B6H9 119 aa11.12□□□□□ -0.63
NME3-205ENST00000563854 NPYP01303 97 aa11.12□□□□□ -0.63
NME3-205ENST00000563854 RPL39P62891 51 aaKnown RBP11.12□□□□□ -0.63
NME3-205ENST00000563854 Q6ZRU5 148 aa11.12□□□□□ -0.63
NME3-205ENST00000563854 C5orf38Q86SI9 138 aa11.12□□□□□ -0.63
NME3-205ENST00000563854 LINC00474Q9P2X8 69 aa11.12□□□□□ -0.63
NME3-205ENST00000563854 TRBV24-1A0A075B6N3 115 aa11.11□□□□□ -0.63
NME3-205ENST00000563854 A0A1B0GXF2 115 aa11.11□□□□□ -0.63
NME3-205ENST00000563854 TCAPO15273 167 aa11.1□□□□□ -0.63
NME3-205ENST00000563854 GAGE2BQ13066 116 aa11.1□□□□□ -0.63
NME3-205ENST00000563854 CAMK2N2Q96S95 79 aa11.1□□□□□ -0.63
NME3-205ENST00000563854 TIMM21Q9BVV7 248 aa11.1□□□□□ -0.63
NME3-205ENST00000563854 RPL32P62910 135 aaKnown RBP11.09□□□□□ -0.63
NME3-205ENST00000563854 PRR3P79522 188 aaKnown RBP11.09□□□□□ -0.63
NME3-205ENST00000563854 APOMO95445 188 aa11.08□□□□□ -0.64
NME3-205ENST00000563854 SPAG11BQ08648 103 aa11.08□□□□□ -0.64
NME3-205ENST00000563854 OPRPNQ99935 248 aaPredicted RBP11.08□□□□□ -0.64
NME3-205ENST00000563854 PLA2G2DQ9UNK4 145 aa11.08□□□□□ -0.64
NME3-205ENST00000563854 LOC107984640A0A0U1RRK4 108 aa11.07□□□□□ -0.64
NME3-205ENST00000563854 PPBPP02775 128 aa11.07□□□□□ -0.64
NME3-205ENST00000563854 ORMDL3Q8N138 153 aa11.07□□□□□ -0.64
NME3-205ENST00000563854 SPANXA1Q9NS26 97 aa11.07□□□□□ -0.64
NME3-205ENST00000563854 HMCN2Q8NDA2 5059 aa11.07□□□□□ -0.64
NME3-205ENST00000563854 IFITM10A6NMD0 228 aa11.06□□□□□ -0.64
NME3-205ENST00000563854 PTTG1IPP53801 180 aa11.06□□□□□ -0.64
NME3-205ENST00000563854 PRELID3AQ96N28 172 aa11.06□□□□□ -0.64
NME3-205ENST00000563854 MT1HL1P0DM35 61 aa11.05□□□□□ -0.64
NME3-205ENST00000563854 RAB5AP20339 215 aa11.05□□□□□ -0.64
NME3-205ENST00000563854 RPL18AQ02543 176 aaKnown RBP11.05□□□□□ -0.64
NME3-205ENST00000563854 TMEM136Q6ZRR5 245 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms