RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 NPCDR1Q9BY65 106 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 KLK9Q9UKQ9 250 aa3.39□□□□□ -1.87
VPS35P1-201ENST00000563400 FBN2P35556 2912 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 TLN2Q9Y4G6 2542 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 A0A0D9SG52 128 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 IGLC7A0M8Q6 106 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 A8MWP6 167 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 G3V318 75 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 M0R143 59 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 NCR2O95944 276 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 SNRPD3P62318 126 aaKnown RBP3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 MEIG1Q5JSS6 88 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 SOSTDC1Q6X4U4 206 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 HIST1H2BLQ99880 126 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 RABAC1Q9UI14 185 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 SONP18583 2426 aaKnown RBP3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 HIVEP1P15822 2718 aa3.38□□□□□ -1.87
VPS35P1-201ENST00000563400 HRNRQ86YZ3 2850 aaPredicted RBP3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 A0A096LNJ9 63 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 KANTRA0A1W2PQU2 76 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 TMEM218A2RU14 115 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 C7orf66A4D0T2 115 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 A8MWV9 139 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 SSSCA1O60232 199 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 PITX3O75364 302 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 SLC25A5P05141 298 aaKnown RBP3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 GNG4P50150 75 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 SUPT4H1P63272 117 aaKnown RBP3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 SERF2P84101 59 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 FAM229BQ4G0N7 80 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 C14orf177Q52M58 125 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 LCN15Q6UWW0 184 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 SDIM1Q6ZPB5 146 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 MIR17HGQ75NE6 70 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 HYLS1Q96M11 299 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 TRGV9Q99603 122 aa3.37□□□□□ -1.87
VPS35P1-201ENST00000563400 OTOGQ6ZRI0 2925 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 TRAV2A0A0B4J234 112 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 TRBV27A0A0K0K1C4 114 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 HYPMO75409 117 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 FXYD7P58549 80 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 WT1-ASQ06250 92 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 DEFB116Q30KQ4 102 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 MYOZ3Q8TDC0 251 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 PPP1R1CQ8WVI7 109 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 JMJD1CQ15652 2540 aa3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 MAP1AP78559 2803 aaPredicted RBP3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 SETD2Q9BYW2 2564 aaPredicted RBP3.36□□□□□ -1.87
VPS35P1-201ENST00000563400 IGKV1D-37A0A075B6S9 117 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 OR2T8A6NH00 312 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 HMSDA8MTL9 139 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 UMAD1C9J7I0 102 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 HIST1H2BKO60814 126 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 MPC2O95563 127 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 MT-ND6P03923 174 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 HIST1H2BJP06899 126 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 APELAP0DMC3 54 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 RNASE2P10153 161 aaKnown RBP3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 CBLN1P23435 193 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 HIST1H4AP62805 103 aaKnown RBP3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 C2orf91Q6ZV80 131 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 CYB561D1Q8N8Q1 229 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 OR2T35Q8NGX2 323 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 SFT2D1Q8WV19 159 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 PRELID3AQ96N28 172 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 XAGE1AQ9HD64 81 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 NBPF19A0A087WUL8 3843 aa3.35□□□□□ -1.87
VPS35P1-201ENST00000563400 TRAV3A0A0B4J244 114 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 I3L2K1 104 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 IL4P05112 153 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 IAPPP10997 89 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 ZNF345Q14585 488 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 LGALSLQ3ZCW2 172 aaPredicted RBP3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 C10orf55Q5SWW7 151 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 C10orf113Q5VZT2 155 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 KRTAP7-1Q8IUC3 87 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 SCGB3A1Q96QR1 104 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 TMEM191AQ9H0A3 160 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 TIMM9Q9Y5J7 89 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 SMAD5-AS1Q9Y6J3 95 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 FN1P02751 2386 aaKnown RBP3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 MTORP42345 2549 aa3.34□□□□□ -1.87
VPS35P1-201ENST00000563400 FXYD6-FXYD2A0A087WZ82 144 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 C3orf84H3BNL1 204 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 H3BT86 120 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 K7EIM0 57 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 CTSGP08311 255 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 TPT1P13693 172 aaKnown RBP3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 NDPQ00604 133 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 KHDC3LQ587J8 217 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 DEFB121Q5J5C9 76 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 DPPA3Q6W0C5 159 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 CYP2G1PQ6ZSU1 146 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 C7orf65Q6ZTY9 151 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 LYPD1Q8N2G4 141 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 RNF182Q8N6D2 247 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 C1orf64Q8NEQ6 169 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 AQP10Q96PS8 301 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 SLC50A1Q9BRV3 221 aa3.34□□□□□ -1.88
VPS35P1-201ENST00000563400 RHPN1-AS1Q9BWJ2 59 aa3.34□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms