RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 Q6ZN92 141 aa8.15□□□□□ -1.1
LDLR-212ENST00000560467 CHCHD5Q9BSY4 110 aa8.15□□□□□ -1.1
LDLR-212ENST00000560467 Q9UF83 564 aa8.15□□□□□ -1.1
LDLR-212ENST00000560467 TMEM262E9PQX1 116 aa8.14□□□□□ -1.11
LDLR-212ENST00000560467 NUPR1O60356 82 aa8.14□□□□□ -1.11
LDLR-212ENST00000560467 C20orf203Q8NBC4 194 aa8.14□□□□□ -1.11
LDLR-212ENST00000560467 TOMM6Q96B49 74 aa8.14□□□□□ -1.11
LDLR-212ENST00000560467 TMEM141Q96I45 108 aa8.14□□□□□ -1.11
LDLR-212ENST00000560467 C20orf202A1L168 122 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 PRSS1P07477 247 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 CCL18P55774 89 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 TIRAPP58753 221 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 ERASQ7Z444 233 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 DEFB104AQ8WTQ1 72 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 URB1-AS1Q96HZ7 61 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 C12orf57Q99622 126 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 HIST1H2BLQ99880 126 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 SPANXA1Q9NS26 97 aa8.13□□□□□ -1.11
LDLR-212ENST00000560467 A0A087WX48 190 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 NPSP0C0P6 89 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 LINC00694P0DN24 101 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 LINC00310P59036 64 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 KRTDAPP60985 99 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 LELP1Q5T871 98 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 C1orf134Q5TEV5 83 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 OR5A1Q8NGJ0 315 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 IFI27L1Q96BM0 104 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 VCX2Q9H322 139 aa8.12□□□□□ -1.11
LDLR-212ENST00000560467 ZNF25P17030 456 aaPredicted RBP8.11□□□□□ -1.11
LDLR-212ENST00000560467 LYPD5Q6UWN5 251 aa8.11□□□□□ -1.11
LDLR-212ENST00000560467 OR10D4PQ8NGN7 298 aa8.11□□□□□ -1.11
LDLR-212ENST00000560467 TIMM17AQ99595 171 aa8.11□□□□□ -1.11
LDLR-212ENST00000560467 TIMM21Q9BVV7 248 aa8.11□□□□□ -1.11
LDLR-212ENST00000560467 PYGO1Q9Y3Y4 419 aa8.11□□□□□ -1.11
LDLR-212ENST00000560467 C16orf90A8MZG2 172 aa8.1□□□□□ -1.11
LDLR-212ENST00000560467 TNP2Q05952 138 aa8.1□□□□□ -1.11
LDLR-212ENST00000560467 C2orf88Q9BSF0 95 aa8.1□□□□□ -1.11
LDLR-212ENST00000560467 CHCHD7Q9BUK0 85 aa8.1□□□□□ -1.11
LDLR-212ENST00000560467 DNAH5Q8TE73 4624 aa8.09□□□□□ -1.11
LDLR-212ENST00000560467 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.09□□□□□ -1.11
LDLR-212ENST00000560467 IGKV2-29A2NJV5 120 aaPredicted RBP8.09□□□□□ -1.11
LDLR-212ENST00000560467 FGF6P10767 208 aa8.09□□□□□ -1.11
LDLR-212ENST00000560467 GAGE6Q13070 117 aa8.09□□□□□ -1.11
LDLR-212ENST00000560467 NTM-AS1Q6ZSK4 140 aa8.09□□□□□ -1.11
LDLR-212ENST00000560467 MAPKAPK5-AS1Q8N8E1 139 aa8.09□□□□□ -1.11
LDLR-212ENST00000560467 CSDC2Q9Y534 153 aaKnown RBP8.09□□□□□ -1.11
LDLR-212ENST00000560467 APOBP04114 4563 aaKnown RBP8.08□□□□□ -1.12
LDLR-212ENST00000560467 H0Y8G0 127 aa8.08□□□□□ -1.12
LDLR-212ENST00000560467 SCGB1D1O95968 90 aa8.08□□□□□ -1.12
LDLR-212ENST00000560467 RPL39P62891 51 aaKnown RBP8.08□□□□□ -1.12
LDLR-212ENST00000560467 PET117Q6UWS5 81 aa8.08□□□□□ -1.12
LDLR-212ENST00000560467 TEX43Q6ZNM6 134 aa8.08□□□□□ -1.12
LDLR-212ENST00000560467 MRPL52Q86TS9 123 aaKnown RBP8.08□□□□□ -1.12
LDLR-212ENST00000560467 CDK2AP2O75956 126 aa8.07□□□□□ -1.12
LDLR-212ENST00000560467 PMVKQ15126 192 aa8.07□□□□□ -1.12
LDLR-212ENST00000560467 NACAE9PAV3 2078 aa8.07□□□□□ -1.12
LDLR-212ENST00000560467 TRAV9-2A0A087WT02 112 aa8.06□□□□□ -1.12
LDLR-212ENST00000560467 A0A096LNJ9 63 aa8.06□□□□□ -1.12
LDLR-212ENST00000560467 A0A1B0GUV1 79 aa8.06□□□□□ -1.12
LDLR-212ENST00000560467 IGIPA6NJ69 53 aa8.06□□□□□ -1.12
LDLR-212ENST00000560467 SYS1-DBNDD2H3BUS1 97 aa8.06□□□□□ -1.12
LDLR-212ENST00000560467 MRPS36P82909 103 aaKnown RBP8.06□□□□□ -1.12
LDLR-212ENST00000560467 ESRGQ1W209 222 aa8.06□□□□□ -1.12
LDLR-212ENST00000560467 ZNF664Q8N3J9 261 aa8.06□□□□□ -1.12
LDLR-212ENST00000560467 UBE2D4Q9Y2X8 147 aa8.06□□□□□ -1.12
LDLR-212ENST00000560467 C3orf79P0CE67 100 aa8.05□□□□□ -1.12
LDLR-212ENST00000560467 SEC11AP67812 179 aa8.05□□□□□ -1.12
LDLR-212ENST00000560467 SPATA12Q7Z6I5 190 aa8.05□□□□□ -1.12
LDLR-212ENST00000560467 HERC1Q15751 4861 aa8.04□□□□□ -1.12
LDLR-212ENST00000560467 TRAV12-1A0A0B4J245 112 aa8.04□□□□□ -1.12
LDLR-212ENST00000560467 NBDYA0A0U1RRE5 68 aa8.04□□□□□ -1.12
LDLR-212ENST00000560467 IFITM10A6NMD0 228 aa8.04□□□□□ -1.12
LDLR-212ENST00000560467 CST9LQ9H4G1 147 aa8.04□□□□□ -1.12
LDLR-212ENST00000560467 MRPS16Q9Y3D3 137 aaKnown RBP8.04□□□□□ -1.12
LDLR-212ENST00000560467 CHTOPQ9Y3Y2 248 aaKnown RBP8.04□□□□□ -1.12
LDLR-212ENST00000560467 IGLV4-3A0A075B6K6 122 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 HSBP1L1C9JCN9 74 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 CCL25O15444 150 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 ANGP03950 147 aaKnown RBP8.03□□□□□ -1.12
LDLR-212ENST00000560467 PLNP26678 52 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 RBX1P62877 108 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 LINC00173Q6ZV60 143 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 C6orf223Q8N319 242 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 BAALCQ8WXS3 180 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 CDC42SE2Q9NRR3 84 aa8.03□□□□□ -1.12
LDLR-212ENST00000560467 K7EP13 123 aa8.02□□□□□ -1.13
LDLR-212ENST00000560467 SIVA1O15304 175 aa8.02□□□□□ -1.13
LDLR-212ENST00000560467 CRPP02741 224 aa8.02□□□□□ -1.13
LDLR-212ENST00000560467 SS18Q15532 418 aa8.02□□□□□ -1.13
LDLR-212ENST00000560467 Q8N1X5 172 aa8.02□□□□□ -1.13
LDLR-212ENST00000560467 GEMIN7Q9H840 131 aaKnown RBP8.02□□□□□ -1.13
LDLR-212ENST00000560467 DPM2O94777 84 aa8.01□□□□□ -1.13
LDLR-212ENST00000560467 JOSD1Q15040 202 aaPredicted RBP8.01□□□□□ -1.13
LDLR-212ENST00000560467 MPV17L2Q567V2 206 aa8.01□□□□□ -1.13
LDLR-212ENST00000560467 C10orf126Q8N4M7 172 aa8.01□□□□□ -1.13
LDLR-212ENST00000560467 OPRPNQ99935 248 aaPredicted RBP8.01□□□□□ -1.13
LDLR-212ENST00000560467 TRAV13-1A0A0B4J241 112 aa8□□□□□ -1.13
LDLR-212ENST00000560467 IGKV3OR2-268A0A0C4DH90 116 aa8□□□□□ -1.13
LDLR-212ENST00000560467 F8VRH5 84 aa8□□□□□ -1.13
LDLR-212ENST00000560467 IGHV3-30P01768 117 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms