RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 VSIG2Q96IQ7 327 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 TRGV1A0A0A0MS02 117 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 TEN1Q86WV5 123 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 C1orf158Q8N1D5 194 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 WFDC11Q8NEX6 87 aa9.28□□□□□ -0.92
LDLR-207ENST00000558013 MT-ATP8P03928 68 aa9.27□□□□□ -0.92
LDLR-207ENST00000558013 WFDC10AQ9H1F0 79 aa9.27□□□□□ -0.92
LDLR-207ENST00000558013 EDA2RQ9HAV5 297 aa9.27□□□□□ -0.92
LDLR-207ENST00000558013 INSP01308 110 aa9.27□□□□□ -0.93
LDLR-207ENST00000558013 PLA2G2AP14555 144 aa9.27□□□□□ -0.93
LDLR-207ENST00000558013 PDZD2O15018 2839 aa9.27□□□□□ -0.93
LDLR-207ENST00000558013 TRBV20-1A0A075B6N2 111 aa9.27□□□□□ -0.93
LDLR-207ENST00000558013 TRIAP1O43715 76 aa9.27□□□□□ -0.93
LDLR-207ENST00000558013 SLC25A20O43772 301 aa9.27□□□□□ -0.93
LDLR-207ENST00000558013 Q6ZTI0 123 aa9.27□□□□□ -0.93
LDLR-207ENST00000558013 XGP55808 180 aa9.26□□□□□ -0.93
LDLR-207ENST00000558013 ESM1Q9NQ30 184 aa9.26□□□□□ -0.93
LDLR-207ENST00000558013 HELZ2Q9BYK8 2649 aaKnown RBP9.26□□□□□ -0.93
LDLR-207ENST00000558013 GEMIN7Q9H840 131 aaKnown RBP9.26□□□□□ -0.93
LDLR-207ENST00000558013 NOTCH2Q04721 2471 aa9.26□□□□□ -0.93
LDLR-207ENST00000558013 A0A0B4J2C4 111 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 TINCRA0A1B0GVN0 87 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 BEAN1Q3B7T3 259 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 LYRM7Q5U5X0 104 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 SBSPONQ8IVN8 264 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 ATP6V0E2Q8NHE4 81 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 PPDPFLQ8WWR9 84 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 STHQ8IWL8 128 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 SPANXA1Q9NS26 97 aa9.25□□□□□ -0.93
LDLR-207ENST00000558013 DNAJC9-AS1A6NH13 148 aa9.24□□□□□ -0.93
LDLR-207ENST00000558013 RS1O15537 224 aa9.24□□□□□ -0.93
LDLR-207ENST00000558013 DGAT2L7PQ6IED9 249 aa9.24□□□□□ -0.93
LDLR-207ENST00000558013 TMEM101Q96IK0 257 aa9.24□□□□□ -0.93
LDLR-207ENST00000558013 NTM-AS1Q6ZSK4 140 aa9.24□□□□□ -0.93
LDLR-207ENST00000558013 HIVEP2P31629 2446 aa9.23□□□□□ -0.93
LDLR-207ENST00000558013 TRAV13-1A0A0B4J241 112 aa9.23□□□□□ -0.93
LDLR-207ENST00000558013 CLEC2BQ92478 149 aa9.23□□□□□ -0.93
LDLR-207ENST00000558013 CITED2Q99967 270 aaPredicted RBP9.23□□□□□ -0.93
LDLR-207ENST00000558013 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.22□□□□□ -0.93
LDLR-207ENST00000558013 CCL24O00175 119 aa9.22□□□□□ -0.93
LDLR-207ENST00000558013 NTN5Q8WTR8 489 aaPredicted RBP9.22□□□□□ -0.93
LDLR-207ENST00000558013 TEX49A0A1B0GTD5 131 aa9.22□□□□□ -0.93
LDLR-207ENST00000558013 GAGE12JA6NER3 117 aa9.22□□□□□ -0.93
LDLR-207ENST00000558013 GAGE4Q13068 117 aa9.22□□□□□ -0.93
LDLR-207ENST00000558013 GAGE5Q13069 117 aa9.22□□□□□ -0.93
LDLR-207ENST00000558013 MIAQ16674 131 aa9.22□□□□□ -0.93
LDLR-207ENST00000558013 LINC00242Q5T6M2 205 aa9.22□□□□□ -0.93
LDLR-207ENST00000558013 CLUHP3Q96NS8 147 aa9.22□□□□□ -0.93
LDLR-207ENST00000558013 NOP10Q9NPE3 64 aaKnown RBP9.22□□□□□ -0.93
LDLR-207ENST00000558013 LOC100131303A0A0U1RQF7 123 aa9.21□□□□□ -0.93
LDLR-207ENST00000558013 CIDEAO60543 219 aa9.21□□□□□ -0.93
LDLR-207ENST00000558013 ZFAND6Q6FIF0 208 aa9.21□□□□□ -0.93
LDLR-207ENST00000558013 CRYBA4P53673 196 aa9.21□□□□□ -0.94
LDLR-207ENST00000558013 LINC01620Q4KN68 170 aa9.21□□□□□ -0.94
LDLR-207ENST00000558013 FASNP49327 2511 aaKnown RBP9.2□□□□□ -0.94
LDLR-207ENST00000558013 GIG44P09565 113 aaPredicted RBP9.2□□□□□ -0.94
LDLR-207ENST00000558013 PIK3CD-AS1Q5SR53 167 aa9.2□□□□□ -0.94
LDLR-207ENST00000558013 Q9H8V8 135 aa9.2□□□□□ -0.94
LDLR-207ENST00000558013 UNC79Q9P2D8 2635 aa9.2□□□□□ -0.94
LDLR-207ENST00000558013 RPL35AP18077 110 aaKnown RBP9.2□□□□□ -0.94
LDLR-207ENST00000558013 ICOSQ9Y6W8 199 aa9.2□□□□□ -0.94
LDLR-207ENST00000558013 DNAJC30Q96LL9 226 aa9.19□□□□□ -0.94
LDLR-207ENST00000558013 SPANXDQ9BXN6 97 aa9.19□□□□□ -0.94
LDLR-207ENST00000558013 SPANXCQ9NY87 97 aa9.19□□□□□ -0.94
LDLR-207ENST00000558013 ANK3Q12955 4377 aaKnown RBP9.19□□□□□ -0.94
LDLR-207ENST00000558013 TRBV30A0A0K0K1B3 111 aa9.18□□□□□ -0.94
LDLR-207ENST00000558013 SCGB1A1P11684 91 aa9.18□□□□□ -0.94
LDLR-207ENST00000558013 ATXN8Q156A1 80 aa9.18□□□□□ -0.94
LDLR-207ENST00000558013 GAGE7O76087 117 aa9.18□□□□□ -0.94
LDLR-207ENST00000558013 GAGE12FP0CL80 117 aa9.18□□□□□ -0.94
LDLR-207ENST00000558013 GAGE12GP0CL81 117 aa9.18□□□□□ -0.94
LDLR-207ENST00000558013 GAGE12IP0CL82 117 aa9.18□□□□□ -0.94
LDLR-207ENST00000558013 RPL13AP40429 203 aaKnown RBP9.18□□□□□ -0.94
LDLR-207ENST00000558013 IL17DQ8TAD2 202 aa9.18□□□□□ -0.94
LDLR-207ENST00000558013 IGKV3OR2-268A0A0C4DH90 116 aa9.17□□□□□ -0.94
LDLR-207ENST00000558013 K7EQD1 137 aa9.17□□□□□ -0.94
LDLR-207ENST00000558013 SOSTDC1Q6X4U4 206 aa9.17□□□□□ -0.94
LDLR-207ENST00000558013 HECTD1Q9ULT8 2610 aa9.17□□□□□ -0.94
LDLR-207ENST00000558013 TENM1Q9UKZ4 2725 aa9.17□□□□□ -0.94
LDLR-207ENST00000558013 IGLV5-45A0A087WSX0 123 aa9.16□□□□□ -0.94
LDLR-207ENST00000558013 SMIM1B2RUZ4 78 aa9.16□□□□□ -0.94
LDLR-207ENST00000558013 H7C423 109 aa9.16□□□□□ -0.94
LDLR-207ENST00000558013 CKS1BP61024 79 aa9.16□□□□□ -0.94
LDLR-207ENST00000558013 NDUFA1O15239 70 aa9.16□□□□□ -0.94
LDLR-207ENST00000558013 TIRAPP58753 221 aa9.16□□□□□ -0.94
LDLR-207ENST00000558013 RPL36AP83881 106 aaKnown RBP9.16□□□□□ -0.94
LDLR-207ENST00000558013 RPL36ALQ969Q0 106 aaKnown RBP9.16□□□□□ -0.94
LDLR-207ENST00000558013 LRRC75A-AS1Q8N1F1 130 aa9.16□□□□□ -0.94
LDLR-207ENST00000558013 PLAC8L1A1L4L8 177 aa9.15□□□□□ -0.94
LDLR-207ENST00000558013 LINC01006Q8NI28 216 aa9.15□□□□□ -0.94
LDLR-207ENST00000558013 CRLF1O75462 422 aa9.15□□□□□ -0.95
LDLR-207ENST00000558013 LINC00308Q8TCZ7 52 aa9.15□□□□□ -0.95
LDLR-207ENST00000558013 IGLV5-39A0A0G2JS06 123 aa9.14□□□□□ -0.95
LDLR-207ENST00000558013 SVIPQ8NHG7 77 aa9.14□□□□□ -0.95
LDLR-207ENST00000558013 CDC42SE2Q9NRR3 84 aa9.14□□□□□ -0.95
LDLR-207ENST00000558013 TRGV2A0A075B6R0 118 aa9.14□□□□□ -0.95
LDLR-207ENST00000558013 C2orf82Q6UX34 121 aa9.14□□□□□ -0.95
LDLR-207ENST00000558013 TRBV10-2A0A0K0K1G8 114 aa9.14□□□□□ -0.95
LDLR-207ENST00000558013 OTOGQ6ZRI0 2925 aa9.13□□□□□ -0.95
LDLR-207ENST00000558013 HERVK_113P63121 156 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms