RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 IGHV4OR15-8A0A075B7B6 117 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 A0A087WW49 117 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 SMIM9A6NGZ8 99 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 J3KT08 172 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 TRIAP1O43715 76 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 PPP1R17O96001 155 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 TSHBP01222 138 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 TRBV12-3P01733 135 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 HOXD3P31249 432 aaPredicted RBP5.65□□□□□ -1.51
LIMA1-216ENST00000552909 SLURP1P55000 103 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 MUSTN1Q8IVN3 82 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 IMUPQ9GZP8 106 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 TP53TG1Q9Y2A0 90 aa5.65□□□□□ -1.51
LIMA1-216ENST00000552909 LOC107984640A0A0U1RRK4 108 aa5.64□□□□□ -1.51
LIMA1-216ENST00000552909 H7C423 109 aa5.64□□□□□ -1.51
LIMA1-216ENST00000552909 WIPF1O43516 503 aa5.64□□□□□ -1.51
LIMA1-216ENST00000552909 MGPP08493 103 aa5.64□□□□□ -1.51
LIMA1-216ENST00000552909 KRTAP10-11P60412 298 aa5.64□□□□□ -1.51
LIMA1-216ENST00000552909 DEFB121Q5J5C9 76 aa5.64□□□□□ -1.51
LIMA1-216ENST00000552909 KPRPQ5T749 579 aaPredicted RBP5.64□□□□□ -1.51
LIMA1-216ENST00000552909 TMEM141Q96I45 108 aa5.64□□□□□ -1.51
LIMA1-216ENST00000552909 TRGV11A0A075B6L2 103 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 IGIPA6NJ69 53 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 UQCRQO14949 82 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 HERVK_113P63121 156 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 POM121L12Q8N7R1 296 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 A0A1B0GX51 115 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 LEPROTO15243 131 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 COX6CP09669 75 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 ZNRF2Q8NHG8 242 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 DNAH9Q9NYC9 4486 aa5.63□□□□□ -1.51
LIMA1-216ENST00000552909 ACYP1P07311 99 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 ZNF876PQ49A33 203 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 FAM19A5Q7Z5A7 132 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-216ENST00000552909 LINC00526Q96FQ7 95 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 METTL26Q96S19 204 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 TIMM17AQ99595 171 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 SPANXCQ9NY87 97 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 PHLDA3Q9Y5J5 127 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 ICOSQ9Y6W8 199 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 TMEM223A0PJW6 202 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 S100A4P26447 101 aaKnown RBP5.62□□□□□ -1.51
LIMA1-216ENST00000552909 ZFAND3Q9H8U3 227 aa5.62□□□□□ -1.51
LIMA1-216ENST00000552909 ZNF256Q9Y2P7 627 aaPredicted RBP5.62□□□□□ -1.51
LIMA1-216ENST00000552909 IGHV3OR16-13A0A075B7E8 117 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 IGHV3-49A0A0A0MS15 119 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 IGHV3-74A0A0B4J1X5 117 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 IGHV3-66A0A0C4DH42 116 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 OVOL1O14753 267 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 BUB3O43684 328 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 ATP5G1P05496 136 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 EGFEM1PQ0D2K5 195 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 UNQ9165/PRO28630Q6UXU0 137 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 C9orf47Q6ZRZ4 202 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 OR13C6PQ8NH95 151 aa5.61□□□□□ -1.51
LIMA1-216ENST00000552909 MRPL53Q96EL3 112 aaKnown RBP5.61□□□□□ -1.51
LIMA1-216ENST00000552909 A0A0J9YX75 114 aa5.6□□□□□ -1.51
LIMA1-216ENST00000552909 SDHAF1A6NFY7 115 aa5.6□□□□□ -1.51
LIMA1-216ENST00000552909 SPRY2O43597 315 aa5.6□□□□□ -1.51
LIMA1-216ENST00000552909 ZNF22P17026 224 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-216ENST00000552909 RPL39P62891 51 aaKnown RBP5.6□□□□□ -1.51
LIMA1-216ENST00000552909 CEMP1Q6PRD7 247 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-216ENST00000552909 GPHB5Q86YW7 130 aa5.6□□□□□ -1.51
LIMA1-216ENST00000552909 TRAV25A0A0B4J276 109 aa5.6□□□□□ -1.51
LIMA1-216ENST00000552909 LST1O00453 97 aa5.6□□□□□ -1.51
LIMA1-216ENST00000552909 NDUFA4O00483 81 aa5.6□□□□□ -1.51
LIMA1-216ENST00000552909 SYNJ2BPP57105 145 aa5.6□□□□□ -1.51
LIMA1-216ENST00000552909 IGHV3-64A0A075B6Q5 118 aa5.59□□□□□ -1.51
LIMA1-216ENST00000552909 K7EIL1 84 aa5.59□□□□□ -1.51
LIMA1-216ENST00000552909 VCYO14598 125 aa5.59□□□□□ -1.51
LIMA1-216ENST00000552909 RPS28P62857 69 aaKnown RBP5.59□□□□□ -1.51
LIMA1-216ENST00000552909 PRR9Q5T870 116 aa5.59□□□□□ -1.51
LIMA1-216ENST00000552909 C9orf66Q5T8R8 295 aa5.59□□□□□ -1.51
LIMA1-216ENST00000552909 LINC00643Q86TS7 51 aa5.59□□□□□ -1.51
LIMA1-216ENST00000552909 CLEC2BQ92478 149 aa5.59□□□□□ -1.51
LIMA1-216ENST00000552909 KLK5Q9Y337 293 aaPredicted RBP5.59□□□□□ -1.51
LIMA1-216ENST00000552909 TRAV21A0A0B4J279 112 aa5.59□□□□□ -1.52
LIMA1-216ENST00000552909 A0A0J9YXY3 114 aa5.59□□□□□ -1.52
LIMA1-216ENST00000552909 MED14OSP0DP75 135 aa5.59□□□□□ -1.52
LIMA1-216ENST00000552909 EDN2P20800 178 aa5.59□□□□□ -1.52
LIMA1-216ENST00000552909 GAGE2AQ6NT46 116 aa5.59□□□□□ -1.52
LIMA1-216ENST00000552909 LENEPQ9Y5L5 61 aa5.59□□□□□ -1.52
LIMA1-216ENST00000552909 NBEAL2Q6ZNJ1 2754 aa5.59□□□□□ -1.52
LIMA1-216ENST00000552909 PRSS2P07478 247 aa5.58□□□□□ -1.52
LIMA1-216ENST00000552909 COX7CP15954 63 aa5.58□□□□□ -1.52
LIMA1-216ENST00000552909 POLR2KP53803 58 aaKnown RBP5.58□□□□□ -1.52
LIMA1-216ENST00000552909 MRAPQ8TCY5 172 aa5.58□□□□□ -1.52
LIMA1-216ENST00000552909 DEFB104AQ8WTQ1 72 aa5.58□□□□□ -1.52
LIMA1-216ENST00000552909 EDA2RQ9HAV5 297 aa5.58□□□□□ -1.52
LIMA1-216ENST00000552909 TRAV8-3A0A0A6YYJ7 113 aa5.57□□□□□ -1.52
LIMA1-216ENST00000552909 U3KQE9 123 aa5.57□□□□□ -1.52
LIMA1-216ENST00000552909 CRYGAP11844 174 aa5.57□□□□□ -1.52
LIMA1-216ENST00000552909 CXCL5P42830 114 aa5.57□□□□□ -1.52
LIMA1-216ENST00000552909 DAZ1Q9NQZ3 744 aaKnown RBP5.57□□□□□ -1.52
LIMA1-216ENST00000552909 I3L3M4 83 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 RPL11P62913 178 aaKnown RBP5.56□□□□□ -1.52
LIMA1-216ENST00000552909 SUMO4Q6EEV6 95 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 SMCR5Q8TEV8 140 aa5.56□□□□□ -1.52
LIMA1-216ENST00000552909 C16orf92Q96LL3 132 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms