RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 ADAMTS9Q9P2N4 1935 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 IQCF6A8MYZ5 107 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 DNAL4O96015 105 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 SAA2P0DJI9 122 aaPredicted RBP3.35□□□□□ -1.87
VPS29-210ENST00000552130 LINC00315P59091 139 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 Q86TA4 180 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 COX7B2Q8TF08 81 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 PSENENQ9NZ42 101 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 DOCK10Q96BY6 2186 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 SIP14410 1827 aa3.35□□□□□ -1.87
VPS29-210ENST00000552130 EFCAB5A4FU69 1503 aa3.34□□□□□ -1.87
VPS29-210ENST00000552130 HMGXB3Q12766 1538 aa3.34□□□□□ -1.87
VPS29-210ENST00000552130 DIP2CQ9Y2E4 1556 aa3.34□□□□□ -1.87
VPS29-210ENST00000552130 CTTNBP2Q8WZ74 1663 aa3.34□□□□□ -1.87
VPS29-210ENST00000552130 NRXN2Q9P2S2 1712 aa3.34□□□□□ -1.87
VPS29-210ENST00000552130 IGKV2-24A0A0C4DH68 120 aa3.34□□□□□ -1.87
VPS29-210ENST00000552130 ARL2-SNX15V9GYD0 113 aa3.34□□□□□ -1.87
VPS29-210ENST00000552130 RGPD8O14715 1765 aaPredicted RBP3.33□□□□□ -1.88
VPS29-210ENST00000552130 RGPD5Q99666 1765 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 TRGV4A0A0C4DH28 118 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 MYMXA0A1B0GTQ4 84 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 FAM223BA6NKX1 122 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 KRTAP12-2P59991 146 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 DEFB121Q5J5C9 76 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 TMEM14CQ9P0S9 112 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 COL4A2P08572 1712 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 RGPD2P0DJD1 1756 aa3.33□□□□□ -1.88
VPS29-210ENST00000552130 IGKV3D-7A0A0C4DH55 119 aa3.32□□□□□ -1.88
VPS29-210ENST00000552130 IGKV3OR2-268A0A0C4DH90 116 aa3.32□□□□□ -1.88
VPS29-210ENST00000552130 IGKV1-17P01599 117 aa3.32□□□□□ -1.88
VPS29-210ENST00000552130 FAM74A4Q5TZK3 123 aa3.32□□□□□ -1.88
VPS29-210ENST00000552130 TTTY12Q9BZ98 90 aa3.32□□□□□ -1.88
VPS29-210ENST00000552130 EHBP1L1Q8N3D4 1523 aa3.32□□□□□ -1.88
VPS29-210ENST00000552130 FN1P02751 2386 aaKnown RBP3.32□□□□□ -1.88
VPS29-210ENST00000552130 KDM3BQ7LBC6 1761 aa3.31□□□□□ -1.88
VPS29-210ENST00000552130 LRRC37A3O60309 1634 aa3.31□□□□□ -1.88
VPS29-210ENST00000552130 IGLV3-32A0A0A0MS00 114 aa3.31□□□□□ -1.88
VPS29-210ENST00000552130 DEFB132Q7Z7B7 95 aa3.31□□□□□ -1.88
VPS29-210ENST00000552130 MDC1Q14676 2089 aaKnown RBP3.31□□□□□ -1.88
VPS29-210ENST00000552130 PDCD11Q14690 1871 aaKnown RBP3.3□□□□□ -1.88
VPS29-210ENST00000552130 DLEC1Q9Y238 1755 aa3.3□□□□□ -1.88
VPS29-210ENST00000552130 A0A1B0GWA3 101 aa3.3□□□□□ -1.88
VPS29-210ENST00000552130 RPL37AP61513 92 aaKnown RBP3.3□□□□□ -1.88
VPS29-210ENST00000552130 PLGLAQ15195 96 aa3.3□□□□□ -1.88
VPS29-210ENST00000552130 AMELXQ99217 191 aa3.3□□□□□ -1.88
VPS29-210ENST00000552130 R4GMQ9 66 aa3.3□□□□□ -1.88
VPS29-210ENST00000552130 MYOM1P52179 1685 aa3.3□□□□□ -1.88
VPS29-210ENST00000552130 MRC1P22897 1456 aa3.29□□□□□ -1.88
VPS29-210ENST00000552130 AFDNP55196 1824 aaKnown RBP3.29□□□□□ -1.88
VPS29-210ENST00000552130 CEBPZOSA8MTT3 80 aa3.29□□□□□ -1.88
VPS29-210ENST00000552130 IGLV3-19P01714 112 aa3.29□□□□□ -1.88
VPS29-210ENST00000552130 NBDYA0A0U1RRE5 68 aa3.28□□□□□ -1.88
VPS29-210ENST00000552130 F8VRH5 84 aa3.28□□□□□ -1.88
VPS29-210ENST00000552130 ARMS2P0C7Q2 107 aa3.28□□□□□ -1.88
VPS29-210ENST00000552130 CCL18P55774 89 aa3.28□□□□□ -1.88
VPS29-210ENST00000552130 LINC00322Q6ZN03 302 aaPredicted RBP3.28□□□□□ -1.88
VPS29-210ENST00000552130 C6orf201Q7Z4U5 140 aa3.28□□□□□ -1.88
VPS29-210ENST00000552130 PPP1R1CQ8WVI7 109 aa3.28□□□□□ -1.88
VPS29-210ENST00000552130 TXNDC17Q9BRA2 123 aa3.28□□□□□ -1.88
VPS29-210ENST00000552130 PCDH15Q96QU1 1955 aa3.28□□□□□ -1.88
VPS29-210ENST00000552130 SHROOM3Q8TF72 1996 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 ARHGEF5Q12774 1597 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 A0A087WXM4 84 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 TRBV6-5A0A0K0K1A5 114 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 KRTAP5-8O75690 187 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 LEPROTL1O95214 131 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 SFTA3P0C7M3 94 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 IL9P15248 144 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 COA5Q86WW8 74 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 PRR15LQ9BU68 103 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 V9GYV3 84 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 LAMA4Q16363 1823 aa3.27□□□□□ -1.89
VPS29-210ENST00000552130 GBF1Q92538 1859 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 ARFGEF1Q9Y6D6 1849 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 ARFGEF2Q9Y6D5 1785 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 IGKV2-40A0A087WW87 121 aaPredicted RBP3.26□□□□□ -1.89
VPS29-210ENST00000552130 IGKV2-29A2NJV5 120 aaPredicted RBP3.26□□□□□ -1.89
VPS29-210ENST00000552130 INE1O15225 51 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 IGKV2D-40P01614 121 aaPredicted RBP3.26□□□□□ -1.89
VPS29-210ENST00000552130 SPINT3P49223 89 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 FXYD3Q14802 87 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 IGFL1Q6UW32 110 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 TET1Q8NFU7 2136 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 TARBP1Q13395 1621 aaKnown RBP3.26□□□□□ -1.89
VPS29-210ENST00000552130 BTAF1O14981 1849 aa3.26□□□□□ -1.89
VPS29-210ENST00000552130 LMTK2Q8IWU2 1503 aa3.25□□□□□ -1.89
VPS29-210ENST00000552130 COL5A3P25940 1745 aaPredicted RBP3.25□□□□□ -1.89
VPS29-210ENST00000552130 D6R8Y8 96 aa3.25□□□□□ -1.89
VPS29-210ENST00000552130 MUSTN1Q8IVN3 82 aa3.25□□□□□ -1.89
VPS29-210ENST00000552130 ZNF563Q8TA94 476 aa3.25□□□□□ -1.89
VPS29-210ENST00000552130 LINC01558Q9Y6Z2 57 aa3.25□□□□□ -1.89
VPS29-210ENST00000552130 PREX2Q70Z35 1606 aa3.25□□□□□ -1.89
VPS29-210ENST00000552130 RREB1Q92766 1687 aa3.24□□□□□ -1.89
VPS29-210ENST00000552130 M0R135 149 aa3.24□□□□□ -1.89
VPS29-210ENST00000552130 M0R2N4 97 aa3.24□□□□□ -1.89
VPS29-210ENST00000552130 FXYD1O00168 92 aa3.24□□□□□ -1.89
VPS29-210ENST00000552130 FXYD4P59646 89 aa3.24□□□□□ -1.89
VPS29-210ENST00000552130 MYO7BQ6PIF6 2116 aa3.24□□□□□ -1.89
VPS29-210ENST00000552130 C5orf56Q8N8D9 126 aa3.24□□□□□ -1.89
VPS29-210ENST00000552130 LINC00304Q8N9R0 145 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms