RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 TRAV8-4A0A0B4J246 113 aa14.36□□□□□ -0.11
NEK3-202ENST00000550841 LINC01546A6NGU7 62 aa14.36□□□□□ -0.11
NEK3-202ENST00000550841 Q6ZRN7 208 aaPredicted RBP14.36□□□□□ -0.11
NEK3-202ENST00000550841 ZNF664Q8N3J9 261 aa14.36□□□□□ -0.11
NEK3-202ENST00000550841 C1orf43Q9BWL3 253 aa14.36□□□□□ -0.11
NEK3-202ENST00000550841 KRTAP17-1Q9BYP8 105 aa14.36□□□□□ -0.11
NEK3-202ENST00000550841 CDC42SE2Q9NRR3 84 aa14.36□□□□□ -0.11
NEK3-202ENST00000550841 CYSLTR1Q9Y271 337 aa14.36□□□□□ -0.11
NEK3-202ENST00000550841 PRSS29PA6NIE9 313 aa14.35□□□□□ -0.11
NEK3-202ENST00000550841 LINC01549A6NIU2 74 aa14.35□□□□□ -0.11
NEK3-202ENST00000550841 RPL39P62891 51 aaKnown RBP14.35□□□□□ -0.11
NEK3-202ENST00000550841 IGKV2D-24A0A075B6R9 120 aa14.34□□□□□ -0.11
NEK3-202ENST00000550841 LINC00614P0C842 121 aa14.34□□□□□ -0.11
NEK3-202ENST00000550841 C2orf66Q6UXQ4 117 aa14.34□□□□□ -0.11
NEK3-202ENST00000550841 PYGO1Q9Y3Y4 419 aa14.34□□□□□ -0.11
NEK3-202ENST00000550841 CLPSL2Q6UWE3 100 aa14.33□□□□□ -0.12
NEK3-202ENST00000550841 AP5S1Q9NUS5 200 aa14.33□□□□□ -0.12
NEK3-202ENST00000550841 MRPS36P82909 103 aaKnown RBP14.32□□□□□ -0.12
NEK3-202ENST00000550841 FRAS1Q86XX4 4008 aa14.31□□□□□ -0.12
NEK3-202ENST00000550841 IGKV3OR2-268A0A0C4DH90 116 aa14.3□□□□□ -0.12
NEK3-202ENST00000550841 EREGO14944 169 aa14.3□□□□□ -0.12
NEK3-202ENST00000550841 CCL25O15444 150 aa14.3□□□□□ -0.12
NEK3-202ENST00000550841 NPSP0C0P6 89 aa14.3□□□□□ -0.12
NEK3-202ENST00000550841 TOMM6Q96B49 74 aa14.3□□□□□ -0.12
NEK3-202ENST00000550841 TNP2Q05952 138 aa14.29□□□□□ -0.12
NEK3-202ENST00000550841 SS18Q15532 418 aa14.28□□□□□ -0.12
NEK3-202ENST00000550841 PAPPA-AS1Q5QFB9 102 aa14.28□□□□□ -0.12
NEK3-202ENST00000550841 BAGE3Q86Y29 109 aa14.28□□□□□ -0.12
NEK3-202ENST00000550841 CHCHD1Q96BP2 118 aaKnown RBP14.28□□□□□ -0.12
NEK3-202ENST00000550841 LINC00959A0A1B0GUT2 108 aa14.27□□□□□ -0.13
NEK3-202ENST00000550841 Q6ZUT4 128 aa14.27□□□□□ -0.13
NEK3-202ENST00000550841 IGLV10-54A0A075B6I4 117 aa14.26□□□□□ -0.13
NEK3-202ENST00000550841 Q6ZN92 141 aa14.26□□□□□ -0.13
NEK3-202ENST00000550841 ERASQ7Z444 233 aa14.26□□□□□ -0.13
NEK3-202ENST00000550841 URB1-AS1Q96HZ7 61 aa14.26□□□□□ -0.13
NEK3-202ENST00000550841 TMEM141Q96I45 108 aa14.26□□□□□ -0.13
NEK3-202ENST00000550841 SCGB3A1Q96QR1 104 aa14.26□□□□□ -0.13
NEK3-202ENST00000550841 IGIPA6NJ69 53 aa14.25□□□□□ -0.13
NEK3-202ENST00000550841 C1orf196B1AJZ1 125 aa14.25□□□□□ -0.13
NEK3-202ENST00000550841 TIMM17AQ99595 171 aa14.25□□□□□ -0.13
NEK3-202ENST00000550841 DNAH2Q9P225 4427 aa14.25□□□□□ -0.13
NEK3-202ENST00000550841 DNAH10Q8IVF4 4471 aa14.24□□□□□ -0.13
NEK3-202ENST00000550841 IGLV4-3A0A075B6K6 122 aa14.24□□□□□ -0.13
NEK3-202ENST00000550841 CHCHD10Q8WYQ3 142 aaPredicted RBP14.24□□□□□ -0.13
NEK3-202ENST00000550841 OPRPNQ99935 248 aaPredicted RBP14.24□□□□□ -0.13
NEK3-202ENST00000550841 VCX2Q9H322 139 aa14.24□□□□□ -0.13
NEK3-202ENST00000550841 A0A087WTM6 91 aa14.23□□□□□ -0.13
NEK3-202ENST00000550841 HBDP02042 147 aa14.23□□□□□ -0.13
NEK3-202ENST00000550841 RNASE13Q5GAN3 156 aaKnown RBP14.23□□□□□ -0.13
NEK3-202ENST00000550841 TEX43Q6ZNM6 134 aa14.23□□□□□ -0.13
NEK3-202ENST00000550841 TRAV13-1A0A0B4J241 112 aa14.22□□□□□ -0.13
NEK3-202ENST00000550841 KRTAP26-1Q6PEX3 210 aa14.22□□□□□ -0.13
NEK3-202ENST00000550841 FAM104AQ969W3 186 aa14.22□□□□□ -0.13
NEK3-202ENST00000550841 C2orf88Q9BSF0 95 aa14.22□□□□□ -0.13
NEK3-202ENST00000550841 LRCOL1A6NCL2 159 aa14.21□□□□□ -0.13
NEK3-202ENST00000550841 GAGE12HA6NDE8 117 aa14.21□□□□□ -0.13
NEK3-202ENST00000550841 IFITM10A6NMD0 228 aa14.21□□□□□ -0.13
NEK3-202ENST00000550841 MAPKAPK5-AS1Q8N8E1 139 aa14.21□□□□□ -0.13
NEK3-202ENST00000550841 BAALCQ8WXS3 180 aa14.21□□□□□ -0.13
NEK3-202ENST00000550841 HSBP1O75506 76 aa14.2□□□□□ -0.14
NEK3-202ENST00000550841 DNAH17Q9UFH2 4485 aa14.19□□□□□ -0.14
NEK3-202ENST00000550841 XCL1P47992 114 aa14.19□□□□□ -0.14
NEK3-202ENST00000550841 C14orf177Q52M58 125 aa14.19□□□□□ -0.14
NEK3-202ENST00000550841 CD164L2Q6UWJ8 174 aa14.19□□□□□ -0.14
NEK3-202ENST00000550841 AMELXQ99217 191 aa14.19□□□□□ -0.14
NEK3-202ENST00000550841 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.18□□□□□ -0.14
NEK3-202ENST00000550841 CFAP161Q6P656 301 aa14.18□□□□□ -0.14
NEK3-202ENST00000550841 HERC2O95714 4834 aa14.18□□□□□ -0.14
NEK3-202ENST00000550841 A0A1B0GVY2 172 aa14.17□□□□□ -0.14
NEK3-202ENST00000550841 ATP5LO75964 103 aa14.17□□□□□ -0.14
NEK3-202ENST00000550841 PMCHL1Q16048 86 aa14.17□□□□□ -0.14
NEK3-202ENST00000550841 A0A096LNJ9 63 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BKO60814 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 SERF1AO75920 110 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BJP06899 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BOP23527 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BBP33778 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BDP58876 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BCP62807 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 FOXI1Q12951 378 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST2H2BEQ16778 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 PDZD11Q5EBL8 140 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BHQ93079 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BNQ99877 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 HIST1H2BMQ99879 126 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 PGPEP1Q9NXJ5 209 aa14.16□□□□□ -0.14
NEK3-202ENST00000550841 Q8N814 137 aa14.15□□□□□ -0.14
NEK3-202ENST00000550841 USP17L23D6RBM5 183 aa14.14□□□□□ -0.15
NEK3-202ENST00000550841 LECT2O14960 151 aa14.14□□□□□ -0.15
NEK3-202ENST00000550841 SEC11AP67812 179 aa14.14□□□□□ -0.15
NEK3-202ENST00000550841 UBE2D1P51668 147 aa14.13□□□□□ -0.15
NEK3-202ENST00000550841 LINC00173Q6ZV60 143 aa14.13□□□□□ -0.15
NEK3-202ENST00000550841 SPATA12Q7Z6I5 190 aa14.13□□□□□ -0.15
NEK3-202ENST00000550841 NTN5Q8WTR8 489 aaPredicted RBP14.13□□□□□ -0.15
NEK3-202ENST00000550841 COX7A2LO14548 114 aa14.12□□□□□ -0.15
NEK3-202ENST00000550841 WFDC2Q14508 124 aa14.12□□□□□ -0.15
NEK3-202ENST00000550841 PMVKQ15126 192 aa14.12□□□□□ -0.15
NEK3-202ENST00000550841 ZC2HC1BQ5TFG8 222 aa14.11□□□□□ -0.15
NEK3-202ENST00000550841 CDPF1Q6NVV7 123 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms