RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 GAGE2EQ4V326 116 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 Q8N2B8 174 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 GAGE2DQ9UEU5 116 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.94□□□□□ -0.82
VPS33A-208ENST00000543633 IGLV5-39A0A0G2JS06 123 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 IGKV2-29A2NJV5 120 aaPredicted RBP9.94□□□□□ -0.82
VPS33A-208ENST00000543633 HERVK_113P63121 156 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 Q6ZSN1 163 aa9.94□□□□□ -0.82
VPS33A-208ENST00000543633 BEX4Q9NWD9 120 aaPredicted RBP9.94□□□□□ -0.82
VPS33A-208ENST00000543633 HIST2H2BCQ6DN03 193 aa9.93□□□□□ -0.82
VPS33A-208ENST00000543633 MAP6D1Q9H9H5 199 aa9.93□□□□□ -0.82
VPS33A-208ENST00000543633 NBPF19A0A087WUL8 3843 aa9.93□□□□□ -0.82
VPS33A-208ENST00000543633 TEX49A0A1B0GTD5 131 aa9.92□□□□□ -0.82
VPS33A-208ENST00000543633 HTN1P15515 57 aa9.92□□□□□ -0.82
VPS33A-208ENST00000543633 RNASE13Q5GAN3 156 aaKnown RBP9.92□□□□□ -0.82
VPS33A-208ENST00000543633 GCN1Q92616 2671 aaKnown RBP9.92□□□□□ -0.82
VPS33A-208ENST00000543633 SLURP1P55000 103 aa9.92□□□□□ -0.82
VPS33A-208ENST00000543633 C4orf3Q8WVX3 66 aa9.92□□□□□ -0.82
VPS33A-208ENST00000543633 CDKN2A-AS1Q9UH64 79 aa9.92□□□□□ -0.82
VPS33A-208ENST00000543633 CSDC2Q9Y534 153 aaKnown RBP9.92□□□□□ -0.82
VPS33A-208ENST00000543633 DEFB113Q30KQ7 82 aa9.91□□□□□ -0.82
VPS33A-208ENST00000543633 TMEM101Q96IK0 257 aa9.91□□□□□ -0.82
VPS33A-208ENST00000543633 LINC01587Q99440 93 aa9.91□□□□□ -0.82
VPS33A-208ENST00000543633 NAV2Q8IVL1 2488 aa9.9□□□□□ -0.82
VPS33A-208ENST00000543633 TRBV10-1A0A0K0K1A3 114 aa9.9□□□□□ -0.82
VPS33A-208ENST00000543633 DGAT2L7PQ6IED9 249 aa9.9□□□□□ -0.82
VPS33A-208ENST00000543633 LRRC75A-AS1Q8N1F1 130 aa9.9□□□□□ -0.82
VPS33A-208ENST00000543633 IL17DQ8TAD2 202 aa9.9□□□□□ -0.82
VPS33A-208ENST00000543633 NDUFV3P56181 108 aaKnown RBP9.89□□□□□ -0.83
VPS33A-208ENST00000543633 GAGE5Q13069 117 aa9.89□□□□□ -0.83
VPS33A-208ENST00000543633 GAGE6Q13070 117 aa9.89□□□□□ -0.83
VPS33A-208ENST00000543633 DYNLRB2Q8TF09 96 aa9.89□□□□□ -0.83
VPS33A-208ENST00000543633 Q9UF83 564 aa9.89□□□□□ -0.83
VPS33A-208ENST00000543633 TRAV4A0A0B4J268 109 aa9.89□□□□□ -0.83
VPS33A-208ENST00000543633 LINC00308Q8TCZ7 52 aa9.89□□□□□ -0.83
VPS33A-208ENST00000543633 CLEC2BQ92478 149 aa9.89□□□□□ -0.83
VPS33A-208ENST00000543633 IGHV3OR16-12A0A075B7B8 117 aa9.88□□□□□ -0.83
VPS33A-208ENST00000543633 TRAV25A0A0B4J276 109 aa9.88□□□□□ -0.83
VPS33A-208ENST00000543633 A8MZ25 164 aa9.88□□□□□ -0.83
VPS33A-208ENST00000543633 KRTAP1-3Q8IUG1 177 aa9.88□□□□□ -0.83
VPS33A-208ENST00000543633 C15orf53Q8NAA6 179 aa9.88□□□□□ -0.83
VPS33A-208ENST00000543633 PDZD2O15018 2839 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 ZANQ9Y493 2812 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 COX7A2LO14548 114 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 NHLRC4P0CG21 123 aaPredicted RBP9.87□□□□□ -0.83
VPS33A-208ENST00000543633 HERV-K104P63124 156 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 DEFB114Q30KQ6 69 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 LINC00242Q5T6M2 205 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 CITED2Q99967 270 aaPredicted RBP9.87□□□□□ -0.83
VPS33A-208ENST00000543633 IGHV3-38A0A0C4DH36 116 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 CRLF1O75462 422 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 ACYP1P07311 99 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 TTC32Q5I0X7 151 aa9.87□□□□□ -0.83
VPS33A-208ENST00000543633 SMIM1B2RUZ4 78 aa9.86□□□□□ -0.83
VPS33A-208ENST00000543633 NPC2P61916 151 aa9.86□□□□□ -0.83
VPS33A-208ENST00000543633 DAZ2Q13117 558 aaKnown RBP9.86□□□□□ -0.83
VPS33A-208ENST00000543633 DEFB136Q30KP8 78 aa9.86□□□□□ -0.83
VPS33A-208ENST00000543633 DAZ4Q86SG3 579 aaKnown RBP9.86□□□□□ -0.83
VPS33A-208ENST00000543633 Q9H8V8 135 aa9.86□□□□□ -0.83
VPS33A-208ENST00000543633 DAZ3Q9NR90 486 aaKnown RBP9.86□□□□□ -0.83
VPS33A-208ENST00000543633 RPL36AP83881 106 aaKnown RBP9.85□□□□□ -0.83
VPS33A-208ENST00000543633 SHISA2Q6UWI4 295 aa9.85□□□□□ -0.83
VPS33A-208ENST00000543633 C18orf65Q6ZTR6 163 aa9.85□□□□□ -0.83
VPS33A-208ENST00000543633 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.85□□□□□ -0.83
VPS33A-208ENST00000543633 RPL36ALQ969Q0 106 aaKnown RBP9.85□□□□□ -0.83
VPS33A-208ENST00000543633 K7EQD1 137 aa9.85□□□□□ -0.83
VPS33A-208ENST00000543633 PRM2P04554 102 aa9.85□□□□□ -0.83
VPS33A-208ENST00000543633 IGHV4-31P0DP07 118 aa9.85□□□□□ -0.83
VPS33A-208ENST00000543633 CR1P17927 2039 aa9.85□□□□□ -0.83
VPS33A-208ENST00000543633 Q6ZSV7 163 aa9.85□□□□□ -0.83
VPS33A-208ENST00000543633 ZNF625Q96I27 306 aaPredicted RBP9.85□□□□□ -0.83
VPS33A-208ENST00000543633 TRBV7-7A0A0K0K1E9 115 aa9.84□□□□□ -0.83
VPS33A-208ENST00000543633 TRACP01848 142 aa9.84□□□□□ -0.83
VPS33A-208ENST00000543633 COX6A2Q02221 97 aa9.84□□□□□ -0.83
VPS33A-208ENST00000543633 ZFHX3Q15911 3703 aa9.84□□□□□ -0.83
VPS33A-208ENST00000543633 UNC79Q9P2D8 2635 aa9.84□□□□□ -0.83
VPS33A-208ENST00000543633 ITPR2Q14571 2701 aa9.84□□□□□ -0.83
VPS33A-208ENST00000543633 MAPK1IP1LQ8NDC0 245 aa9.83□□□□□ -0.84
VPS33A-208ENST00000543633 ZNF469Q96JG9 3925 aaPredicted RBP9.82□□□□□ -0.84
VPS33A-208ENST00000543633 GAGE12JA6NER3 117 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 GAGE7O76087 117 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 PF4P02776 101 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 GAGE12FP0CL80 117 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 GAGE12GP0CL81 117 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 GAGE12IP0CL82 117 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 GAGE4Q13068 117 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 FAM222AQ5U5X8 452 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 DAND5Q8N907 189 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 F5H768 121 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 ODF3L2Q3SX64 289 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 STHQ8IWL8 128 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 TMEM86BQ8N661 226 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 Q96MF0 132 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 IMUPQ9GZP8 106 aa9.82□□□□□ -0.84
VPS33A-208ENST00000543633 PRIMA1Q86XR5 153 aa9.81□□□□□ -0.84
VPS33A-208ENST00000543633 C1orf158Q8N1D5 194 aa9.81□□□□□ -0.84
VPS33A-208ENST00000543633 CDC42SE2Q9NRR3 84 aa9.81□□□□□ -0.84
VPS33A-208ENST00000543633 FASNP49327 2511 aaKnown RBP9.81□□□□□ -0.84
VPS33A-208ENST00000543633 TRGV1A0A0A0MS02 117 aa9.8□□□□□ -0.84
VPS33A-208ENST00000543633 SOSTDC1Q6X4U4 206 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 184.7 ms