RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 URB1-AS1Q96HZ7 61 aa7.83□□□□□ -1.16
YBX3-213ENST00000542641 CYSLTR1Q9Y271 337 aa7.83□□□□□ -1.16
YBX3-213ENST00000542641 UBE2D4Q9Y2X8 147 aa7.83□□□□□ -1.16
YBX3-213ENST00000542641 C1orf196B1AJZ1 125 aa7.82□□□□□ -1.16
YBX3-213ENST00000542641 LINC00269Q8N2A0 174 aa7.82□□□□□ -1.16
YBX3-213ENST00000542641 UBE2WQ96B02 151 aa7.82□□□□□ -1.16
YBX3-213ENST00000542641 CHCHD1Q96BP2 118 aaKnown RBP7.82□□□□□ -1.16
YBX3-213ENST00000542641 TIMM21Q9BVV7 248 aa7.82□□□□□ -1.16
YBX3-213ENST00000542641 SPANXA1Q9NS26 97 aa7.82□□□□□ -1.16
YBX3-213ENST00000542641 TRAV8-3A0A0A6YYJ7 113 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BKO60814 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 CRPP02741 224 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BJP06899 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BOP23527 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BBP33778 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BDP58876 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BCP62807 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST2H2BEQ16778 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.81□□□□□ -1.16
YBX3-213ENST00000542641 ZNF664Q8N3J9 261 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BHQ93079 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 TOMM6Q96B49 74 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BNQ99877 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 HIST1H2BMQ99879 126 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 Q9HAA7 133 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 CDC42SE2Q9NRR3 84 aa7.81□□□□□ -1.16
YBX3-213ENST00000542641 CSDC2Q9Y534 153 aaKnown RBP7.81□□□□□ -1.16
YBX3-213ENST00000542641 REG3AQ06141 175 aa7.8□□□□□ -1.16
YBX3-213ENST00000542641 C1orf134Q5TEV5 83 aa7.8□□□□□ -1.16
YBX3-213ENST00000542641 CLPSL2Q6UWE3 100 aa7.8□□□□□ -1.16
YBX3-213ENST00000542641 ENHOQ6UWT2 76 aa7.8□□□□□ -1.16
YBX3-213ENST00000542641 C6orf223Q8N319 242 aa7.8□□□□□ -1.16
YBX3-213ENST00000542641 PYGO1Q9Y3Y4 419 aa7.8□□□□□ -1.16
YBX3-213ENST00000542641 RYR2Q92736 4967 aa7.79□□□□□ -1.16
YBX3-213ENST00000542641 IGKV3OR2-268A0A0C4DH90 116 aa7.79□□□□□ -1.16
YBX3-213ENST00000542641 LINC01549A6NIU2 74 aa7.79□□□□□ -1.16
YBX3-213ENST00000542641 HSBP1O75506 76 aa7.79□□□□□ -1.16
YBX3-213ENST00000542641 PMCHL1Q16048 86 aa7.79□□□□□ -1.16
YBX3-213ENST00000542641 NFE4Q86UQ8 179 aa7.79□□□□□ -1.16
YBX3-213ENST00000542641 SCGB3A1Q96QR1 104 aa7.79□□□□□ -1.16
YBX3-213ENST00000542641 OPRPNQ99935 248 aaPredicted RBP7.79□□□□□ -1.16
YBX3-213ENST00000542641 PRR34Q9NV39 138 aa7.79□□□□□ -1.16
YBX3-213ENST00000542641 IGIPA6NJ69 53 aa7.78□□□□□ -1.16
YBX3-213ENST00000542641 SERF1AO75920 110 aa7.78□□□□□ -1.16
YBX3-213ENST00000542641 HBDP02042 147 aa7.78□□□□□ -1.16
YBX3-213ENST00000542641 MRPS36P82909 103 aaKnown RBP7.78□□□□□ -1.16
YBX3-213ENST00000542641 MIAQ16674 131 aa7.78□□□□□ -1.16
YBX3-213ENST00000542641 RNASE13Q5GAN3 156 aaKnown RBP7.78□□□□□ -1.16
YBX3-213ENST00000542641 Q6ZUT4 128 aa7.78□□□□□ -1.16
YBX3-213ENST00000542641 IGLV4-3A0A075B6K6 122 aa7.77□□□□□ -1.17
YBX3-213ENST00000542641 A0A096LNJ9 63 aa7.77□□□□□ -1.17
YBX3-213ENST00000542641 LINC00310P59036 64 aa7.77□□□□□ -1.17
YBX3-213ENST00000542641 ERASQ7Z444 233 aa7.77□□□□□ -1.17
YBX3-213ENST00000542641 FAM19A2Q8N3H0 131 aa7.77□□□□□ -1.17
YBX3-213ENST00000542641 RMI2Q96E14 147 aa7.77□□□□□ -1.17
YBX3-213ENST00000542641 TIMM17AQ99595 171 aa7.77□□□□□ -1.17
YBX3-213ENST00000542641 IGLV10-54A0A075B6I4 117 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 IGKV2D-24A0A075B6R9 120 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 TRAV8-4A0A0B4J246 113 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 NUPR1O60356 82 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 NPSP0C0P6 89 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 NDUFA6P56556 154 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 PAPPA-AS1Q5QFB9 102 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 Q6ZN92 141 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 FAM104AQ969W3 186 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 TMEM141Q96I45 108 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 C1orf43Q9BWL3 253 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 TM2D2Q9BX73 214 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 VCX2Q9H322 139 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 DNAH2Q9P225 4427 aa7.76□□□□□ -1.17
YBX3-213ENST00000542641 LINC00959A0A1B0GUT2 108 aa7.75□□□□□ -1.17
YBX3-213ENST00000542641 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.75□□□□□ -1.17
YBX3-213ENST00000542641 PSCAO43653 123 aa7.75□□□□□ -1.17
YBX3-213ENST00000542641 PDZD11Q5EBL8 140 aa7.75□□□□□ -1.17
YBX3-213ENST00000542641 TEX43Q6ZNM6 134 aa7.75□□□□□ -1.17
YBX3-213ENST00000542641 COX11Q9Y6N1 276 aa7.75□□□□□ -1.17
YBX3-213ENST00000542641 TRAV13-1A0A0B4J241 112 aa7.74□□□□□ -1.17
YBX3-213ENST00000542641 IFITM10A6NMD0 228 aa7.74□□□□□ -1.17
YBX3-213ENST00000542641 SS18Q15532 418 aa7.74□□□□□ -1.17
YBX3-213ENST00000542641 ZC2HC1BQ5TFG8 222 aa7.74□□□□□ -1.17
YBX3-213ENST00000542641 C2orf88Q9BSF0 95 aa7.74□□□□□ -1.17
YBX3-213ENST00000542641 RTL8CO15255 209 aa7.73□□□□□ -1.17
YBX3-213ENST00000542641 ATP5LO75964 103 aa7.73□□□□□ -1.17
YBX3-213ENST00000542641 COA6Q5JTJ3 125 aaKnown RBP7.73□□□□□ -1.17
YBX3-213ENST00000542641 Q6ZRN7 208 aaPredicted RBP7.73□□□□□ -1.17
YBX3-213ENST00000542641 CHCHD10Q8WYQ3 142 aaPredicted RBP7.73□□□□□ -1.17
YBX3-213ENST00000542641 AMELXQ99217 191 aa7.73□□□□□ -1.17
YBX3-213ENST00000542641 RYR3Q15413 4870 aa7.73□□□□□ -1.17
YBX3-213ENST00000542641 CCL25O15444 150 aa7.72□□□□□ -1.17
YBX3-213ENST00000542641 LEPROTL1O95214 131 aa7.72□□□□□ -1.17
YBX3-213ENST00000542641 XCL1P47992 114 aa7.72□□□□□ -1.17
YBX3-213ENST00000542641 BAALCQ8WXS3 180 aa7.72□□□□□ -1.17
YBX3-213ENST00000542641 DNAH10Q8IVF4 4471 aa7.71□□□□□ -1.17
YBX3-213ENST00000542641 GAGE12HA6NDE8 117 aa7.71□□□□□ -1.18
YBX3-213ENST00000542641 S100A6P06703 90 aa7.71□□□□□ -1.18
YBX3-213ENST00000542641 FABP4P15090 132 aa7.71□□□□□ -1.18
YBX3-213ENST00000542641 LINC00173Q6ZV60 143 aa7.71□□□□□ -1.18
YBX3-213ENST00000542641 FRAS1Q86XX4 4008 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 PRSS29PA6NIE9 313 aa7.7□□□□□ -1.18
YBX3-213ENST00000542641 PRSS1P07477 247 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms