RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 DEFB123Q8N688 67 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 TP53AIP1Q9HCN2 124 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 CDC42SE2Q9NRR3 84 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 IER3IP1Q9Y5U9 82 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 FLNCQ14315 2725 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 HMGXB3Q12766 1538 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 TULP4Q9NRJ4 1543 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 SPTBN2O15020 2390 aa-0.14□□□□□ -2.43
VPS13A-213ENST00000539950 WNK2Q9Y3S1 2297 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 SHANK2Q9UPX8 1470 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 UBR5O95071 2799 aaPredicted RBP-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 NSD1Q96L73 2696 aaPredicted RBP-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 ROCK2O75116 1388 aaKnown RBP-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 PAPPAQ13219 1627 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 TRAV22A0A0B4J277 110 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 CTXND1A0A1B0GTU2 59 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 IGLC7A0M8Q6 106 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 OOSP1A8MZH6 123 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 MIF4GDA9UHW6 222 aaKnown RBP-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 FAM25AB3EWG3 89 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 FAM25CB3EWG5 89 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 FAM25GB3EWG6 89 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 F8VRH5 84 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 HMGN4O00479 90 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 DLEU1O43261 78 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 SPRR1AP35321 89 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 CATR1Q13166 79 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 RPL13AP3Q6NVV1 102 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 BAGE2Q86Y30 109 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 FAM167A-AS1Q96KT0 104 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 LINC00474Q9P2X8 69 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 C10orf71Q711Q0 1435 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 NSD3Q9BZ95 1437 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 ROBO1Q9Y6N7 1651 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 VWFP04275 2813 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 ERCC6L2Q5T890 1561 aa-0.15□□□□□ -2.43
VPS13A-213ENST00000539950 C2CD3Q4AC94 2353 aa-0.16□□□□□ -2.43
VPS13A-213ENST00000539950 KTN1Q86UP2 1357 aaKnown RBP-0.16□□□□□ -2.43
VPS13A-213ENST00000539950 NCOR1O75376 2440 aa-0.16□□□□□ -2.43
VPS13A-213ENST00000539950 MAPKBP1O60336 1514 aa-0.16□□□□□ -2.43
VPS13A-213ENST00000539950 EHBP1L1Q8N3D4 1523 aa-0.16□□□□□ -2.43
VPS13A-213ENST00000539950 CUL7Q14999 1698 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 UBE2L5PA0A1B0GUS4 154 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 IFNGP01579 166 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 PRM1P04553 51 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 AKAIN1P0CW23 69 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 ATP5EP56381 51 aaPredicted RBP-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 UBE2L3P68036 154 aaKnown RBP-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 DEFB109BQ30KR1 87 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 TMEM170BQ5T4T1 132 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 Q6JHZ5 121 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 MYOZ3Q8TDC0 251 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 FAM107BQ9H098 131 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 DPH3P1Q9H4G8 78 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 ZNF236Q9UL36 1845 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 EIF4G3O43432 1585 aaKnown RBP-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 ZNF292O60281 2723 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 MAGI1Q96QZ7 1491 aaPredicted RBP-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 WDR7Q9Y4E6 1490 aa-0.16□□□□□ -2.44
VPS13A-213ENST00000539950 FAM135AQ9P2D6 1515 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 TET3O43151 1660 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 SBF2Q86WG5 1849 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 DOCK2Q92608 1830 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 TNXBP22105 4242 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 H3BQ15 152 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 SFT2D2O95562 160 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 APOC3P02656 99 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 IFITM1P13164 125 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 S100A3P33764 101 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 UBE2D3P61077 147 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 UBE2D2P62837 147 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 HAMPP81172 84 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 PTPN13Q12923 2485 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 MRPL54Q6P161 138 aaKnown RBP-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 TMEM263Q8WUH6 116 aaKnown RBP-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 TSLPQ969D9 159 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 C2orf88Q9BSF0 95 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 NPVFQ9HCQ7 196 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 GAPVD1Q14C86 1478 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 MYCBP2O75592 4640 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 AHCTF1Q8WYP5 2266 aa-0.17□□□□□ -2.44
VPS13A-213ENST00000539950 PKD1L1Q8TDX9 2849 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 LRP2P98164 4655 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 CHD6Q8TD26 2715 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 NRKQ7Z2Y5 1582 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 NCOA3Q9Y6Q9 1424 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 TRBV6-1A0A0K0K1D8 114 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 A0A1B0GV90 55 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 F6UZH7 168 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 CORTO00230 105 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 CFDP00746 253 aaPredicted RBP-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 MGPP08493 103 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 GNG4P50150 75 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 DCDP81605 110 aaKnown RBP-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 SARNPP82979 210 aaKnown RBP-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 WHAMMP3Q1A5X7 153 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 KRTAP6-1Q3LI64 71 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 PIGYQ3MUY2 71 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 C9orf153Q5TBE3 101 aa-0.18□□□□□ -2.44
VPS13A-213ENST00000539950 NXT2Q9NPJ8 142 aaKnown RBP-0.18□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms