RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ERH	P84090	104 aa	Known RBP	3.82	□□□□□ -1.8
CD44-231	ENST00000531110	C15orf32	Q32M92	178 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110	C6orf99	Q4VX62	202 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110	C9orf116	Q5BN46	136 aa	Predicted RBP	3.82	□□□□□ -1.8
CD44-231	ENST00000531110	SPINK14	Q6IE38	97 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.82	□□□□□ -1.8
CD44-231	ENST00000531110	PRNT	Q86SH4	94 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110	C17orf82	Q86X59	251 aa	Predicted RBP	3.82	□□□□□ -1.8
CD44-231	ENST00000531110	CDC42SE2	Q9NRR3	84 aa		3.82	□□□□□ -1.8
CD44-231	ENST00000531110		A0A1B0GVY2	172 aa		3.81	□□□□□ -1.8
CD44-231	ENST00000531110		H7C2G1	150 aa		3.81	□□□□□ -1.8
CD44-231	ENST00000531110	FXYD7	P58549	80 aa		3.81	□□□□□ -1.8
CD44-231	ENST00000531110	NREP	Q16612	68 aa		3.81	□□□□□ -1.8
CD44-231	ENST00000531110	IGFL3	Q6UXB1	125 aa		3.81	□□□□□ -1.8
CD44-231	ENST00000531110		Q9BRP9	147 aa		3.81	□□□□□ -1.8
CD44-231	ENST00000531110	LINC00467	Q9BRT7	94 aa		3.81	□□□□□ -1.8
CD44-231	ENST00000531110	DSCAM	O60469	2012 aa		3.81	□□□□□ -1.8
CD44-231	ENST00000531110	TET2	Q6N021	2002 aa	Predicted RBP	3.81	□□□□□ -1.8
CD44-231	ENST00000531110	USF3	Q68DE3	2245 aa		3.8	□□□□□ -1.8
CD44-231	ENST00000531110	TRBV6-5	A0A0K0K1A5	114 aa		3.8	□□□□□ -1.8
CD44-231	ENST00000531110	ENHO	Q6UWT2	76 aa		3.8	□□□□□ -1.8
CD44-231	ENST00000531110	ZNF702P	Q9H963	129 aa		3.8	□□□□□ -1.8
CD44-231	ENST00000531110	SPAG17	Q6Q759	2223 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	INTS1	Q8N201	2190 aa	Known RBP	3.79	□□□□□ -1.8
CD44-231	ENST00000531110	IGLV3-9	A0A075B6K5	115 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	IGKV1D-37	A0A075B6S9	117 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	C12orf77	C9JDV5	145 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	NDUFA1	O15239	70 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	LHB	P01229	141 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	C9orf66	Q5T8R8	295 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	SPANXA2-OT1	Q8N9U9	137 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	C1orf64	Q8NEQ6	169 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	OCR1	Q9BZK8	76 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	LENEP	Q9Y5L5	61 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	SNURF	Q9Y675	71 aa		3.79	□□□□□ -1.8
CD44-231	ENST00000531110	IGLV3-12	A0A075B6K2	115 aa		3.78	□□□□□ -1.8
CD44-231	ENST00000531110	IGKV1-16	P04430	117 aa		3.78	□□□□□ -1.8
CD44-231	ENST00000531110	HIGD2B	Q4VC39	106 aa		3.78	□□□□□ -1.8
CD44-231	ENST00000531110	LINC00242	Q5T6M2	205 aa		3.78	□□□□□ -1.8
CD44-231	ENST00000531110	ZNF625	Q96I27	306 aa	Predicted RBP	3.78	□□□□□ -1.8
CD44-231	ENST00000531110	NDUFA4L2	Q9NRX3	87 aa		3.78	□□□□□ -1.8
CD44-231	ENST00000531110	ORMDL1	Q9P0S3	153 aa		3.78	□□□□□ -1.8
CD44-231	ENST00000531110	IGHV3-16	A0A0C4DH30	117 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	C5orf67	F2Z3F1	127 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	CHKB-CPT1B	H3BT56	60 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	IGLV3-19	P01714	112 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	CLPS	P04118	112 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	IGHV3-30-3	P0DP02	117 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	POLR2K	P53803	58 aa	Known RBP	3.77	□□□□□ -1.81
CD44-231	ENST00000531110	DEFB134	Q4QY38	66 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	CASC2	Q6XLA1	102 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	ZCCHC13	Q8WW36	166 aa	Known RBP	3.77	□□□□□ -1.81
CD44-231	ENST00000531110	C14orf132	Q9NPU4	83 aa		3.77	□□□□□ -1.81
CD44-231	ENST00000531110	ARFGEF3	Q5TH69	2177 aa		3.76	□□□□□ -1.81
CD44-231	ENST00000531110		K7EQG2	157 aa		3.76	□□□□□ -1.81
CD44-231	ENST00000531110	IGKV3-11	P04433	115 aa		3.76	□□□□□ -1.81
CD44-231	ENST00000531110	CSNK1G2-AS1	Q8NCQ2	148 aa		3.76	□□□□□ -1.81
CD44-231	ENST00000531110	LINC00308	Q8TCZ7	52 aa		3.76	□□□□□ -1.81
CD44-231	ENST00000531110	LINC00574	Q9H8X3	128 aa		3.76	□□□□□ -1.81
CD44-231	ENST00000531110		H3BPC8	53 aa		3.75	□□□□□ -1.81
CD44-231	ENST00000531110		H3BRN7	92 aa		3.75	□□□□□ -1.81
CD44-231	ENST00000531110	BPY2	O14599	106 aa		3.75	□□□□□ -1.81
CD44-231	ENST00000531110	CELA1	Q9UNI1	258 aa		3.75	□□□□□ -1.81
CD44-231	ENST00000531110	UNC13C	Q8NB66	2214 aa		3.75	□□□□□ -1.81
CD44-231	ENST00000531110	ALPK2	Q86TB3	2170 aa		3.75	□□□□□ -1.81
CD44-231	ENST00000531110	SPINK9	Q5DT21	86 aa		3.74	□□□□□ -1.81
CD44-231	ENST00000531110		Q6ZR54	194 aa		3.74	□□□□□ -1.81
CD44-231	ENST00000531110	FLVCR1-AS1	Q8TAF5	88 aa		3.74	□□□□□ -1.81
CD44-231	ENST00000531110	TMEM167A	Q8TBQ9	72 aa		3.74	□□□□□ -1.81
CD44-231	ENST00000531110	RETNLB	Q9BQ08	111 aa		3.74	□□□□□ -1.81
CD44-231	ENST00000531110	ESPL1	Q14674	2120 aa		3.74	□□□□□ -1.81
CD44-231	ENST00000531110	SRCAP	Q6ZRS2	3230 aa		3.74	□□□□□ -1.81
CD44-231	ENST00000531110	TRAV10	A0A0B4J240	114 aa		3.73	□□□□□ -1.81
CD44-231	ENST00000531110	IGHV7-4-1	A0A0J9YVY3	117 aa		3.73	□□□□□ -1.81
CD44-231	ENST00000531110	CNBP	P62633	177 aa	Known RBP	3.73	□□□□□ -1.81
CD44-231	ENST00000531110	RPS21	P63220	83 aa	Known RBP	3.73	□□□□□ -1.81
CD44-231	ENST00000531110	MOBP	Q13875	183 aa		3.73	□□□□□ -1.81
CD44-231	ENST00000531110	LCE3C	Q5T5A8	94 aa		3.73	□□□□□ -1.81
CD44-231	ENST00000531110	MIR7-3HG	Q8N6C7	128 aa		3.73	□□□□□ -1.81
CD44-231	ENST00000531110	SPTSSB	Q8NFR3	76 aa		3.73	□□□□□ -1.81
CD44-231	ENST00000531110	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	3.73	□□□□□ -1.81
CD44-231	ENST00000531110	FREM1	Q5H8C1	2179 aa		3.73	□□□□□ -1.81
CD44-231	ENST00000531110		H0YGG7	62 aa		3.72	□□□□□ -1.81
CD44-231	ENST00000531110	CRP	P02741	224 aa		3.72	□□□□□ -1.81
CD44-231	ENST00000531110		Q6ZQT0	140 aa		3.72	□□□□□ -1.81
CD44-231	ENST00000531110	ZNRF1	Q8ND25	227 aa		3.72	□□□□□ -1.81
CD44-231	ENST00000531110	PLAC8	Q9NZF1	115 aa		3.72	□□□□□ -1.81
CD44-231	ENST00000531110	KNTC1	P50748	2209 aa		3.71	□□□□□ -1.82
CD44-231	ENST00000531110	IGHV3OR16-13	A0A075B7E8	117 aa		3.71	□□□□□ -1.82
CD44-231	ENST00000531110		A6NED7	52 aa		3.71	□□□□□ -1.82
CD44-231	ENST00000531110	LY6G6D	O95868	133 aa		3.71	□□□□□ -1.82
CD44-231	ENST00000531110	HCP5	Q6MZN7	132 aa		3.71	□□□□□ -1.82
CD44-231	ENST00000531110	FGF23	Q9GZV9	251 aa	Predicted RBP	3.71	□□□□□ -1.82
CD44-231	ENST00000531110	KLK9	Q9UKQ9	250 aa		3.71	□□□□□ -1.82
CD44-231	ENST00000531110	LINC01558	Q9Y6Z2	57 aa		3.71	□□□□□ -1.82
CD44-231	ENST00000531110	IGKV3D-11	A0A0A0MRZ8	115 aa		3.7	□□□□□ -1.82
CD44-231	ENST00000531110	TRAV12-3	A0A0B4J271	114 aa		3.7	□□□□□ -1.82
CD44-231	ENST00000531110	SRRM5	B3KS81	715 aa		3.7	□□□□□ -1.82
CD44-231	ENST00000531110	C10orf142	B7Z368	130 aa		3.7	□□□□□ -1.82
CD44-231	ENST00000531110	ZNF32	P17041	273 aa		3.7	□□□□□ -1.82

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