RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 CFAP161Q6P656 301 aa13.5□□□□□ -0.25
VPS28-203ENST00000524521 MRPL52Q86TS9 123 aaKnown RBP13.5□□□□□ -0.25
VPS28-203ENST00000524521 LINC00528Q8N1L1 170 aa13.5□□□□□ -0.25
VPS28-203ENST00000524521 CIRBP-AS1Q8TBR5 109 aa13.5□□□□□ -0.25
VPS28-203ENST00000524521 FAT1Q14517 4588 aa13.49□□□□□ -0.25
VPS28-203ENST00000524521 PNRC1Q12796 327 aaPredicted RBP13.49□□□□□ -0.25
VPS28-203ENST00000524521 C20orf78Q9BR46 151 aa13.49□□□□□ -0.25
VPS28-203ENST00000524521 CDC42SE2Q9NRR3 84 aa13.49□□□□□ -0.25
VPS28-203ENST00000524521 TRBV24-1A0A075B6N3 115 aa13.48□□□□□ -0.25
VPS28-203ENST00000524521 LINC00959A0A1B0GUT2 108 aa13.48□□□□□ -0.25
VPS28-203ENST00000524521 D6R8Y8 96 aa13.48□□□□□ -0.25
VPS28-203ENST00000524521 TNFRSF6BO95407 300 aa13.48□□□□□ -0.25
VPS28-203ENST00000524521 CNBPP62633 177 aaKnown RBP13.48□□□□□ -0.25
VPS28-203ENST00000524521 ZNF664Q8N3J9 261 aa13.48□□□□□ -0.25
VPS28-203ENST00000524521 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.47□□□□□ -0.25
VPS28-203ENST00000524521 MT-ND4LP03901 98 aa13.47□□□□□ -0.25
VPS28-203ENST00000524521 PLA2G1BP04054 148 aaKnown RBP13.47□□□□□ -0.25
VPS28-203ENST00000524521 XCL1P47992 114 aa13.47□□□□□ -0.25
VPS28-203ENST00000524521 C15orf56Q8N910 161 aa13.47□□□□□ -0.25
VPS28-203ENST00000524521 ANAPC16Q96DE5 110 aa13.47□□□□□ -0.25
VPS28-203ENST00000524521 CCL25O15444 150 aa13.46□□□□□ -0.25
VPS28-203ENST00000524521 SLPIP03973 132 aa13.46□□□□□ -0.25
VPS28-203ENST00000524521 SS18Q15532 418 aa13.46□□□□□ -0.25
VPS28-203ENST00000524521 SDIM1Q6ZPB5 146 aa13.46□□□□□ -0.25
VPS28-203ENST00000524521 ATP5L2Q7Z4Y8 100 aa13.46□□□□□ -0.25
VPS28-203ENST00000524521 RPL32P62910 135 aaKnown RBP13.45□□□□□ -0.26
VPS28-203ENST00000524521 SMAGPQ0VAQ4 97 aa13.45□□□□□ -0.26
VPS28-203ENST00000524521 FOXI1Q12951 378 aa13.45□□□□□ -0.26
VPS28-203ENST00000524521 HIGD2BQ4VC39 106 aa13.45□□□□□ -0.26
VPS28-203ENST00000524521 PPBPP02775 128 aa13.44□□□□□ -0.26
VPS28-203ENST00000524521 TMEM18Q96B42 140 aa13.44□□□□□ -0.26
VPS28-203ENST00000524521 UBE2D4Q9Y2X8 147 aa13.44□□□□□ -0.26
VPS28-203ENST00000524521 IGHV3-64A0A075B6Q5 118 aa13.43□□□□□ -0.26
VPS28-203ENST00000524521 NPYP01303 97 aa13.43□□□□□ -0.26
VPS28-203ENST00000524521 SMIM2Q9BVW6 85 aa13.43□□□□□ -0.26
VPS28-203ENST00000524521 SRRM2Q9UQ35 2752 aaKnown RBP13.43□□□□□ -0.26
VPS28-203ENST00000524521 CSDC2Q9Y534 153 aaKnown RBP13.43□□□□□ -0.26
VPS28-203ENST00000524521 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.43□□□□□ -0.26
VPS28-203ENST00000524521 TCAPO15273 167 aa13.42□□□□□ -0.26
VPS28-203ENST00000524521 TMEM136Q6ZRR5 245 aa13.42□□□□□ -0.26
VPS28-203ENST00000524521 PANO1I0J062 215 aa13.41□□□□□ -0.26
VPS28-203ENST00000524521 PHOX2AO14813 284 aa13.41□□□□□ -0.26
VPS28-203ENST00000524521 RNASE13Q5GAN3 156 aaKnown RBP13.41□□□□□ -0.26
VPS28-203ENST00000524521 ORMDL3Q8N138 153 aa13.41□□□□□ -0.26
VPS28-203ENST00000524521 CD164L2Q6UWJ8 174 aa13.4□□□□□ -0.26
VPS28-203ENST00000524521 DPH3Q96FX2 82 aa13.4□□□□□ -0.26
VPS28-203ENST00000524521 PRELID3AQ96N28 172 aa13.4□□□□□ -0.26
VPS28-203ENST00000524521 VPS13BQ7Z7G8 4022 aa13.4□□□□□ -0.26
VPS28-203ENST00000524521 GVQW2A0A096LPI5 108 aaPredicted RBP13.39□□□□□ -0.27
VPS28-203ENST00000524521 RPL39P62891 51 aaKnown RBP13.39□□□□□ -0.27
VPS28-203ENST00000524521 UQCC3Q6UW78 93 aa13.39□□□□□ -0.27
VPS28-203ENST00000524521 TIMM21Q9BVV7 248 aa13.39□□□□□ -0.27
VPS28-203ENST00000524521 FLG2Q5D862 2391 aaPredicted RBP13.38□□□□□ -0.27
VPS28-203ENST00000524521 IGHV1-58A0A0C4DH39 117 aa13.38□□□□□ -0.27
VPS28-203ENST00000524521 C1orf196B1AJZ1 125 aa13.38□□□□□ -0.27
VPS28-203ENST00000524521 TRAV13-1A0A0B4J241 112 aa13.37□□□□□ -0.27
VPS28-203ENST00000524521 TMEM218A2RU14 115 aa13.37□□□□□ -0.27
VPS28-203ENST00000524521 Q6ZUT4 128 aa13.37□□□□□ -0.27
VPS28-203ENST00000524521 RAB5AP20339 215 aa13.36□□□□□ -0.27
VPS28-203ENST00000524521 CHTF8P0CG12 524 aa13.35□□□□□ -0.27
VPS28-203ENST00000524521 ADCYAP1P18509 176 aa13.35□□□□□ -0.27
VPS28-203ENST00000524521 COX6A2Q02221 97 aa13.35□□□□□ -0.27
VPS28-203ENST00000524521 COMMD7Q86VX2 200 aa13.35□□□□□ -0.27
VPS28-203ENST00000524521 LINC00526Q96FQ7 95 aa13.35□□□□□ -0.27
VPS28-203ENST00000524521 LOC389332A0A1B0GUA5 103 aa13.34□□□□□ -0.27
VPS28-203ENST00000524521 MALP21145 153 aa13.34□□□□□ -0.27
VPS28-203ENST00000524521 CIRBPQ14011 172 aaKnown RBP13.34□□□□□ -0.27
VPS28-203ENST00000524521 SPANXA1Q9NS26 97 aa13.34□□□□□ -0.27
VPS28-203ENST00000524521 ZNF561-AS1K7EIQ3 104 aa13.33□□□□□ -0.28
VPS28-203ENST00000524521 COX7A2LO14548 114 aa13.33□□□□□ -0.28
VPS28-203ENST00000524521 PRSS3P2Q8NHM4 247 aa13.33□□□□□ -0.28
VPS28-203ENST00000524521 OPRPNQ99935 248 aaPredicted RBP13.33□□□□□ -0.28
VPS28-203ENST00000524521 LAMTOR2Q9Y2Q5 125 aa13.33□□□□□ -0.28
VPS28-203ENST00000524521 IMMP2LQ96T52 175 aa13.32□□□□□ -0.28
VPS28-203ENST00000524521 MAP1LC3AQ9H492 121 aa13.32□□□□□ -0.28
VPS28-203ENST00000524521 PRSS47A8MTI9 375 aa13.31□□□□□ -0.28
VPS28-203ENST00000524521 KRTAP10-4P60372 401 aaPredicted RBP13.31□□□□□ -0.28
VPS28-203ENST00000524521 RPL37AP61513 92 aaKnown RBP13.31□□□□□ -0.28
VPS28-203ENST00000524521 C5orf38Q86SI9 138 aa13.31□□□□□ -0.28
VPS28-203ENST00000524521 FAM104AQ969W3 186 aa13.31□□□□□ -0.28
VPS28-203ENST00000524521 CTDSP1Q9GZU7 261 aa13.31□□□□□ -0.28
VPS28-203ENST00000524521 A0A087WYN8 130 aa13.3□□□□□ -0.28
VPS28-203ENST00000524521 SPACA4Q8TDM5 124 aa13.3□□□□□ -0.28
VPS28-203ENST00000524521 IGKV2-24A0A0C4DH68 120 aa13.29□□□□□ -0.28
VPS28-203ENST00000524521 MRPS36P82909 103 aaKnown RBP13.29□□□□□ -0.28
VPS28-203ENST00000524521 CARD19Q96LW7 228 aa13.29□□□□□ -0.28
VPS28-203ENST00000524521 SEC11CQ9BY50 192 aa13.29□□□□□ -0.28
VPS28-203ENST00000524521 SYCNQ0VAF6 134 aa13.28□□□□□ -0.28
VPS28-203ENST00000524521 MAJINQ3KP22 176 aa13.28□□□□□ -0.28
VPS28-203ENST00000524521 IGLV4-69A0A075B6H9 119 aa13.27□□□□□ -0.29
VPS28-203ENST00000524521 IFI27P40305 119 aaPredicted RBP13.27□□□□□ -0.29
VPS28-203ENST00000524521 Q8N8P6 123 aa13.27□□□□□ -0.29
VPS28-203ENST00000524521 IFITM10A6NMD0 228 aa13.26□□□□□ -0.29
VPS28-203ENST00000524521 DMBT1Q9UGM3 2413 aaPredicted RBP13.25□□□□□ -0.29
VPS28-203ENST00000524521 A0A096LNI7 61 aa13.25□□□□□ -0.29
VPS28-203ENST00000524521 APOMO95445 188 aa13.25□□□□□ -0.29
VPS28-203ENST00000524521 PLAC8Q9NZF1 115 aa13.25□□□□□ -0.29
VPS28-203ENST00000524521 PYGO1Q9Y3Y4 419 aa13.25□□□□□ -0.29
VPS28-203ENST00000524521 TRAV9-1A0A075B6T8 112 aa13.24□□□□□ -0.29
VPS28-203ENST00000524521 J3QL48 77 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms