RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 SRIP30626 198 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 LINC00313P59037 77 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 RAB4BP61018 213 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 HIST1H1AQ02539 215 aaPredicted RBP4.34□□□□□ -1.71
NPHP3-211ENST00000515289 IQCJQ1A5X6 159 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 DNLZQ5SXM8 178 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 TMEM78Q5T7P6 136 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 LYZL1Q6UWQ5 148 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 Q6ZQT7 251 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 C18orf32Q8TCD1 76 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 LINC00477Q96M19 166 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 CNFNQ9BYD5 112 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 C16orf95Q9H693 158 aa4.34□□□□□ -1.71
NPHP3-211ENST00000515289 TLN2Q9Y4G6 2542 aa4.34□□□□□ -1.72
NPHP3-211ENST00000515289 ZNF469Q96JG9 3925 aaPredicted RBP4.34□□□□□ -1.72
NPHP3-211ENST00000515289 FLNAP21333 2647 aaKnown RBP4.33□□□□□ -1.72
NPHP3-211ENST00000515289 FABP5P3A8MUU1 101 aa4.33□□□□□ -1.72
NPHP3-211ENST00000515289 DEFB136Q30KP8 78 aa4.33□□□□□ -1.72
NPHP3-211ENST00000515289 SAMD13Q5VXD3 122 aa4.33□□□□□ -1.72
NPHP3-211ENST00000515289 FER1L6-AS1Q8NA97 138 aa4.33□□□□□ -1.72
NPHP3-211ENST00000515289 SMR3AQ99954 134 aa4.33□□□□□ -1.72
NPHP3-211ENST00000515289 FASNP49327 2511 aaKnown RBP4.33□□□□□ -1.72
NPHP3-211ENST00000515289 ZFHX3Q15911 3703 aa4.33□□□□□ -1.72
NPHP3-211ENST00000515289 IGKV3-7A0A075B6H7 116 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 OR4C46A6NHA9 309 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 A8MTW9 85 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 CRYGDP07320 174 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 NTF3P20783 257 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 BAGE3Q86Y29 109 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 SPANXA2-OT1Q8N9U9 137 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 ODF3Q96PU9 254 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 PKIGQ9Y2B9 76 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 U3KQK5 164 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 ACANP16112 2415 aa4.32□□□□□ -1.72
NPHP3-211ENST00000515289 MAP1AP78559 2803 aaPredicted RBP4.31□□□□□ -1.72
NPHP3-211ENST00000515289 TRAV2A0A0B4J234 112 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 MUC21A0A0G2JKD1 596 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 A0A0J9YX75 114 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 MUC21A0A140T8X8 626 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 M0R381 172 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 ZNF324O75467 553 aaPredicted RBP4.31□□□□□ -1.72
NPHP3-211ENST00000515289 GPX1P07203 203 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 FGF6P10767 208 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 KRTAP5-3Q6L8H2 238 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 OR11H1Q8NG94 326 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 B9D2Q9BPU9 175 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 KRTAP1-5Q9BYS1 174 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 NIT2Q9NQR4 276 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 TEX15Q9BXT5 2789 aa4.31□□□□□ -1.72
NPHP3-211ENST00000515289 ITPR2Q14571 2701 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 HECTD1Q9ULT8 2610 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 MXRA5Q9NR99 2828 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 IGLV4-69A0A075B6H9 119 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 TRAV21A0A0B4J279 112 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 K7ERS5 55 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 APOMO95445 188 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 CRYBA4P53673 196 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 MRPL51Q4U2R6 128 aaKnown RBP4.3□□□□□ -1.72
NPHP3-211ENST00000515289 PSMG4Q5JS54 123 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 AMTNQ6UX39 209 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 AMN1Q8IY45 258 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 MIR7-3HGQ8N6C7 128 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 OR10AG1Q8NH19 301 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 ZNF418Q8TF45 676 aaPredicted RBP4.3□□□□□ -1.72
NPHP3-211ENST00000515289 TMEM191AQ9H0A3 160 aa4.3□□□□□ -1.72
NPHP3-211ENST00000515289 MRPS16Q9Y3D3 137 aaKnown RBP4.3□□□□□ -1.72
NPHP3-211ENST00000515289 SNRPD3P62318 126 aaKnown RBP4.29□□□□□ -1.72
NPHP3-211ENST00000515289 S100A12P80511 92 aa4.29□□□□□ -1.72
NPHP3-211ENST00000515289 DEFB114Q30KQ6 69 aa4.29□□□□□ -1.72
NPHP3-211ENST00000515289 FOXI2Q6ZQN5 318 aa4.29□□□□□ -1.72
NPHP3-211ENST00000515289 CHCHD1Q96BP2 118 aaKnown RBP4.29□□□□□ -1.72
NPHP3-211ENST00000515289 MYO9AB2RTY4 2548 aa4.29□□□□□ -1.72
NPHP3-211ENST00000515289 GCN1Q92616 2671 aaKnown RBP4.28□□□□□ -1.72
NPHP3-211ENST00000515289 C7orf71A4D174 169 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 IGLL5B9A064 214 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 D6R8Y8 96 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 H3BVH4 76 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 GAS8-AS1O95177 125 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 NPYP01303 97 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 RNASE3P12724 160 aaKnown RBP4.28□□□□□ -1.72
NPHP3-211ENST00000515289 RNASE4P34096 147 aaKnown RBP4.28□□□□□ -1.72
NPHP3-211ENST00000515289 KRTAP10-3P60369 221 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 FAM19A2Q8N3H0 131 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 MTORP42345 2549 aa4.28□□□□□ -1.72
NPHP3-211ENST00000515289 IGHV1-24A0A0C4DH33 117 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 A0A1B0GV72 72 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 KNCNA6PVL3 124 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 LINC00587B1AMM8 73 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 H3BMM0 161 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 GNRH2O43555 120 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 NCR2O95944 276 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 C3orf79P0CE67 100 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 HLA-DRB4P13762 266 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 ASIPP42127 132 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 DEFB131AP59861 70 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 TDRG1Q3Y452 100 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 SPATA12Q7Z6I5 190 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 DYNLRB2Q8TF09 96 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 PRELID3AQ96N28 172 aa4.27□□□□□ -1.73
NPHP3-211ENST00000515289 HLA-DRB4X5D2U9 266 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms