RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 PMCHL2Q9BQD1 86 aa11.14□□□□□ -0.63
NUP54-214ENST00000514307 C2orf88Q9BSF0 95 aa11.14□□□□□ -0.63
NUP54-214ENST00000514307 TSTD3H0UI37 97 aa11.13□□□□□ -0.63
NUP54-214ENST00000514307 ATOH7Q8N100 152 aa11.13□□□□□ -0.63
NUP54-214ENST00000514307 MRPL35Q9NZE8 188 aaKnown RBP11.13□□□□□ -0.63
NUP54-214ENST00000514307 A0A096LPF7 62 aa11.12□□□□□ -0.63
NUP54-214ENST00000514307 TMEM262E9PQX1 116 aa11.12□□□□□ -0.63
NUP54-214ENST00000514307 SPATA45Q537H7 98 aa11.12□□□□□ -0.63
NUP54-214ENST00000514307 CDPF1Q6NVV7 123 aa11.12□□□□□ -0.63
NUP54-214ENST00000514307 ZNF664Q8N3J9 261 aa11.12□□□□□ -0.63
NUP54-214ENST00000514307 AMELXQ99217 191 aa11.12□□□□□ -0.63
NUP54-214ENST00000514307 GAGE6Q13070 117 aa11.11□□□□□ -0.63
NUP54-214ENST00000514307 LELP1Q5T871 98 aa11.11□□□□□ -0.63
NUP54-214ENST00000514307 OPRPNQ99935 248 aaPredicted RBP11.11□□□□□ -0.63
NUP54-214ENST00000514307 PAM16Q9Y3D7 125 aa11.11□□□□□ -0.63
NUP54-214ENST00000514307 TRAV8-6A0A0B4J262 113 aa11.1□□□□□ -0.63
NUP54-214ENST00000514307 A0A1B0GUV1 79 aa11.1□□□□□ -0.63
NUP54-214ENST00000514307 SEC11AP67812 179 aa11.1□□□□□ -0.63
NUP54-214ENST00000514307 CEMP1Q6PRD7 247 aaPredicted RBP11.1□□□□□ -0.63
NUP54-214ENST00000514307 LYPD5Q6UWN5 251 aa11.1□□□□□ -0.63
NUP54-214ENST00000514307 C15orf53Q8NAA6 179 aa11.1□□□□□ -0.63
NUP54-214ENST00000514307 CDC42SE2Q9NRR3 84 aa11.1□□□□□ -0.63
NUP54-214ENST00000514307 NFE4Q86UQ8 179 aa11.08□□□□□ -0.64
NUP54-214ENST00000514307 DNAH3Q8TD57 4116 aa11.07□□□□□ -0.64
NUP54-214ENST00000514307 hDV102S1A0JD36 115 aa11.07□□□□□ -0.64
NUP54-214ENST00000514307 PRKDCP78527 4128 aaKnown RBP11.06□□□□□ -0.64
NUP54-214ENST00000514307 TINCRA0A1B0GVN0 87 aa11.06□□□□□ -0.64
NUP54-214ENST00000514307 HERVK_113P61574 105 aa11.06□□□□□ -0.64
NUP54-214ENST00000514307 ZC2HC1BQ5TFG8 222 aa11.06□□□□□ -0.64
NUP54-214ENST00000514307 STPG4Q8N801 248 aa11.06□□□□□ -0.64
NUP54-214ENST00000514307 FAM104AQ969W3 186 aa11.06□□□□□ -0.64
NUP54-214ENST00000514307 PRO1933Q9H354 126 aa11.06□□□□□ -0.64
NUP54-214ENST00000514307 GEMIN7Q9H840 131 aaKnown RBP11.06□□□□□ -0.64
NUP54-214ENST00000514307 CCL25O15444 150 aa11.05□□□□□ -0.64
NUP54-214ENST00000514307 IGLC3P0DOY3 106 aa11.05□□□□□ -0.64
NUP54-214ENST00000514307 MAJINQ3KP22 176 aa11.05□□□□□ -0.64
NUP54-214ENST00000514307 Q6ZUT4 128 aa11.05□□□□□ -0.64
NUP54-214ENST00000514307 IGLV4-69A0A075B6H9 119 aa11.04□□□□□ -0.64
NUP54-214ENST00000514307 A0A0J9YXV3 536 aa11.04□□□□□ -0.64
NUP54-214ENST00000514307 C11orf86A6NJI1 115 aa11.04□□□□□ -0.64
NUP54-214ENST00000514307 RBX1P62877 108 aa11.04□□□□□ -0.64
NUP54-214ENST00000514307 TMEM170BQ5T4T1 132 aa11.04□□□□□ -0.64
NUP54-214ENST00000514307 MIEN1Q9BRT3 115 aa11.04□□□□□ -0.64
NUP54-214ENST00000514307 PCP4L1A6NKN8 68 aa11.03□□□□□ -0.64
NUP54-214ENST00000514307 UBE2D1P51668 147 aa11.03□□□□□ -0.64
NUP54-214ENST00000514307 UQCR10Q9UDW1 63 aa11.03□□□□□ -0.64
NUP54-214ENST00000514307 IGLL5B9A064 214 aa11.02□□□□□ -0.65
NUP54-214ENST00000514307 H3BRM9 83 aa11.02□□□□□ -0.65
NUP54-214ENST00000514307 HERVK_113P63121 156 aa11.02□□□□□ -0.65
NUP54-214ENST00000514307 RNASE13Q5GAN3 156 aaKnown RBP11.02□□□□□ -0.65
NUP54-214ENST00000514307 FAM19A3Q7Z5A8 133 aa11.02□□□□□ -0.65
NUP54-214ENST00000514307 CHAC1Q9BUX1 264 aa11.02□□□□□ -0.65
NUP54-214ENST00000514307 TRAV13-1A0A0B4J241 112 aa11.01□□□□□ -0.65
NUP54-214ENST00000514307 CCL18P55774 89 aa11.01□□□□□ -0.65
NUP54-214ENST00000514307 SS18Q15532 418 aa11.01□□□□□ -0.65
NUP54-214ENST00000514307 ESRGQ1W209 222 aa11.01□□□□□ -0.65
NUP54-214ENST00000514307 SLC25A34Q6PIV7 304 aa11.01□□□□□ -0.65
NUP54-214ENST00000514307 IGLV4-60A0A075B6I1 120 aa11□□□□□ -0.65
NUP54-214ENST00000514307 ANKRD39Q53RE8 183 aa11□□□□□ -0.65
NUP54-214ENST00000514307 C14orf144Q96I85 54 aa11□□□□□ -0.65
NUP54-214ENST00000514307 E9PLD3 99 aa10.99□□□□□ -0.65
NUP54-214ENST00000514307 COX8AP10176 69 aa10.99□□□□□ -0.65
NUP54-214ENST00000514307 MPV17L2Q567V2 206 aa10.99□□□□□ -0.65
NUP54-214ENST00000514307 KLK5Q9Y337 293 aaPredicted RBP10.99□□□□□ -0.65
NUP54-214ENST00000514307 TGP01266 2768 aa10.98□□□□□ -0.65
NUP54-214ENST00000514307 DLEU1O43261 78 aa10.98□□□□□ -0.65
NUP54-214ENST00000514307 ANGP03950 147 aaKnown RBP10.98□□□□□ -0.65
NUP54-214ENST00000514307 DDTP30046 118 aa10.98□□□□□ -0.65
NUP54-214ENST00000514307 NMUP48645 174 aa10.98□□□□□ -0.65
NUP54-214ENST00000514307 LINC00242Q5T6M2 205 aa10.98□□□□□ -0.65
NUP54-214ENST00000514307 LINC00469Q8N7U9 141 aa10.98□□□□□ -0.65
NUP54-214ENST00000514307 TMEM223A0PJW6 202 aa10.97□□□□□ -0.65
NUP54-214ENST00000514307 ZNF22P17026 224 aaPredicted RBP10.97□□□□□ -0.65
NUP54-214ENST00000514307 TCTAP57738 103 aa10.97□□□□□ -0.65
NUP54-214ENST00000514307 PLEKHB2Q96CS7 222 aa10.97□□□□□ -0.65
NUP54-214ENST00000514307 LINC00959A0A1B0GUT2 108 aa10.96□□□□□ -0.65
NUP54-214ENST00000514307 LINC00269Q8N2A0 174 aa10.96□□□□□ -0.65
NUP54-214ENST00000514307 IGLV5-45A0A087WSX0 123 aa10.95□□□□□ -0.66
NUP54-214ENST00000514307 IGKV3OR2-268A0A0C4DH90 116 aa10.95□□□□□ -0.66
NUP54-214ENST00000514307 NUPR2A6NF83 97 aa10.95□□□□□ -0.66
NUP54-214ENST00000514307 LEPROTO15243 131 aa10.95□□□□□ -0.66
NUP54-214ENST00000514307 SIVA1O15304 175 aa10.95□□□□□ -0.66
NUP54-214ENST00000514307 REG3AQ06141 175 aa10.94□□□□□ -0.66
NUP54-214ENST00000514307 BOD1L2Q8IYS8 172 aa10.94□□□□□ -0.66
NUP54-214ENST00000514307 MRPS16Q9Y3D3 137 aaKnown RBP10.94□□□□□ -0.66
NUP54-214ENST00000514307 LGALS3P17931 250 aaKnown RBP10.93□□□□□ -0.66
NUP54-214ENST00000514307 HNRNPA3P51991 378 aaKnown RBP10.93□□□□□ -0.66
NUP54-214ENST00000514307 COX6A2Q02221 97 aa10.93□□□□□ -0.66
NUP54-214ENST00000514307 CDKN2A-AS1Q9UH64 79 aa10.93□□□□□ -0.66
NUP54-214ENST00000514307 IGKV2D-26A0A0A0MRZ7 120 aa10.92□□□□□ -0.66
NUP54-214ENST00000514307 TRAV8-4A0A0B4J246 113 aa10.92□□□□□ -0.66
NUP54-214ENST00000514307 IGHV1-58A0A0C4DH39 117 aa10.92□□□□□ -0.66
NUP54-214ENST00000514307 KLK12Q9UKR0 248 aa10.92□□□□□ -0.66
NUP54-214ENST00000514307 MYMXA0A1B0GTQ4 84 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 J3QQQ9 107 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 IGHV3-30P01768 117 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 IGHV3-33P01772 117 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 CRPP02741 224 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 IGHV3-30-3P0DP02 117 aa10.91□□□□□ -0.66
NUP54-214ENST00000514307 IGHV3-30-5P0DP03 117 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms