RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 TIMM21Q9BVV7 248 aa10.05□□□□□ -0.8
NUP54-213ENST00000513352 HYDINQ4G0P3 5121 aa10.04□□□□□ -0.8
NUP54-213ENST00000513352 KMT2AQ03164 3969 aa10.04□□□□□ -0.8
NUP54-213ENST00000513352 LINC01546A6NGU7 62 aa10.04□□□□□ -0.8
NUP54-213ENST00000513352 ZNF664Q8N3J9 261 aa10.04□□□□□ -0.8
NUP54-213ENST00000513352 URB1-AS1Q96HZ7 61 aa10.04□□□□□ -0.8
NUP54-213ENST00000513352 C1orf43Q9BWL3 253 aa10.04□□□□□ -0.8
NUP54-213ENST00000513352 RYR2Q92736 4967 aa10.03□□□□□ -0.8
NUP54-213ENST00000513352 IGLV10-54A0A075B6I4 117 aa10.03□□□□□ -0.8
NUP54-213ENST00000513352 PMCHL1Q16048 86 aa10.03□□□□□ -0.8
NUP54-213ENST00000513352 MIAQ16674 131 aa10.03□□□□□ -0.8
NUP54-213ENST00000513352 TOMM6Q96B49 74 aa10.03□□□□□ -0.8
NUP54-213ENST00000513352 OPRPNQ99935 248 aaPredicted RBP10.03□□□□□ -0.8
NUP54-213ENST00000513352 TM2D2Q9BX73 214 aa10.03□□□□□ -0.8
NUP54-213ENST00000513352 CDC42SE2Q9NRR3 84 aa10.03□□□□□ -0.8
NUP54-213ENST00000513352 PRR34Q9NV39 138 aa10.03□□□□□ -0.8
NUP54-213ENST00000513352 CSDC2Q9Y534 153 aaKnown RBP10.03□□□□□ -0.8
NUP54-213ENST00000513352 C1orf196B1AJZ1 125 aa10.02□□□□□ -0.81
NUP54-213ENST00000513352 RTL8CO15255 209 aa10.02□□□□□ -0.81
NUP54-213ENST00000513352 CHCHD1Q96BP2 118 aaKnown RBP10.02□□□□□ -0.81
NUP54-213ENST00000513352 SCGB3A1Q96QR1 104 aa10.02□□□□□ -0.81
NUP54-213ENST00000513352 HSBP1O75506 76 aa10.01□□□□□ -0.81
NUP54-213ENST00000513352 HBDP02042 147 aa10.01□□□□□ -0.81
NUP54-213ENST00000513352 Q6ZN92 141 aa10.01□□□□□ -0.81
NUP54-213ENST00000513352 PYGO1Q9Y3Y4 419 aa10.01□□□□□ -0.81
NUP54-213ENST00000513352 IGLV4-3A0A075B6K6 122 aa10□□□□□ -0.81
NUP54-213ENST00000513352 TRAV13-1A0A0B4J241 112 aa10□□□□□ -0.81
NUP54-213ENST00000513352 IFITM10A6NMD0 228 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BKO60814 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 SERF1AO75920 110 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BJP06899 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BOP23527 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BBP33778 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BDP58876 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BCP62807 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 MRPS36P82909 103 aaKnown RBP10□□□□□ -0.81
NUP54-213ENST00000513352 HIST2H2BEQ16778 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST2H2BFQ5QNW6 126 aaPredicted RBP10□□□□□ -0.81
NUP54-213ENST00000513352 Q6ZRN7 208 aaPredicted RBP10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BHQ93079 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 TMEM141Q96I45 108 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BNQ99877 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 HIST1H2BMQ99879 126 aa10□□□□□ -0.81
NUP54-213ENST00000513352 COX11Q9Y6N1 276 aa10□□□□□ -0.81
NUP54-213ENST00000513352 TRAV8-4A0A0B4J246 113 aa9.99□□□□□ -0.81
NUP54-213ENST00000513352 LINC01549A6NIU2 74 aa9.99□□□□□ -0.81
NUP54-213ENST00000513352 SS18Q15532 418 aa9.99□□□□□ -0.81
NUP54-213ENST00000513352 LINC00959A0A1B0GUT2 108 aa9.98□□□□□ -0.81
NUP54-213ENST00000513352 PRSS29PA6NIE9 313 aa9.98□□□□□ -0.81
NUP54-213ENST00000513352 TEX43Q6ZNM6 134 aa9.98□□□□□ -0.81
NUP54-213ENST00000513352 LINC00336Q6ZUF6 198 aa9.98□□□□□ -0.81
NUP54-213ENST00000513352 ERASQ7Z444 233 aa9.98□□□□□ -0.81
NUP54-213ENST00000513352 TIMM17AQ99595 171 aa9.98□□□□□ -0.81
NUP54-213ENST00000513352 C2orf88Q9BSF0 95 aa9.98□□□□□ -0.81
NUP54-213ENST00000513352 VCX2Q9H322 139 aa9.98□□□□□ -0.81
NUP54-213ENST00000513352 A0A096LNJ9 63 aa9.97□□□□□ -0.81
NUP54-213ENST00000513352 IGIPA6NJ69 53 aa9.97□□□□□ -0.81
NUP54-213ENST00000513352 XCL1P47992 114 aa9.97□□□□□ -0.81
NUP54-213ENST00000513352 TNP2Q05952 138 aa9.97□□□□□ -0.81
NUP54-213ENST00000513352 PAPPA-AS1Q5QFB9 102 aa9.97□□□□□ -0.81
NUP54-213ENST00000513352 FAM19A2Q8N3H0 131 aa9.97□□□□□ -0.81
NUP54-213ENST00000513352 CHCHD10Q8WYQ3 142 aaPredicted RBP9.97□□□□□ -0.81
NUP54-213ENST00000513352 GAGE12HA6NDE8 117 aa9.96□□□□□ -0.82
NUP54-213ENST00000513352 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.96□□□□□ -0.82
NUP54-213ENST00000513352 CCL25O15444 150 aa9.96□□□□□ -0.82
NUP54-213ENST00000513352 ZC2HC1BQ5TFG8 222 aa9.96□□□□□ -0.82
NUP54-213ENST00000513352 FAM104AQ969W3 186 aa9.96□□□□□ -0.82
NUP54-213ENST00000513352 LECT2O14960 151 aa9.95□□□□□ -0.82
NUP54-213ENST00000513352 NPSP0C0P6 89 aa9.95□□□□□ -0.82
NUP54-213ENST00000513352 NDUFA6P56556 154 aa9.95□□□□□ -0.82
NUP54-213ENST00000513352 LINC00310P59036 64 aa9.95□□□□□ -0.82
NUP54-213ENST00000513352 BAALCQ8WXS3 180 aa9.95□□□□□ -0.82
NUP54-213ENST00000513352 EREGO14944 169 aa9.94□□□□□ -0.82
NUP54-213ENST00000513352 ATP5LO75964 103 aa9.94□□□□□ -0.82
NUP54-213ENST00000513352 PDZD11Q5EBL8 140 aa9.94□□□□□ -0.82
NUP54-213ENST00000513352 NUPR1O60356 82 aa9.93□□□□□ -0.82
NUP54-213ENST00000513352 LINC00173Q6ZV60 143 aa9.93□□□□□ -0.82
NUP54-213ENST00000513352 RYR3Q15413 4870 aa9.92□□□□□ -0.82
NUP54-213ENST00000513352 KRTAP26-1Q6PEX3 210 aa9.92□□□□□ -0.82
NUP54-213ENST00000513352 MAPKAPK5-AS1Q8N8E1 139 aa9.92□□□□□ -0.82
NUP54-213ENST00000513352 AMELXQ99217 191 aa9.92□□□□□ -0.82
NUP54-213ENST00000513352 A0A087WTM6 91 aa9.91□□□□□ -0.82
NUP54-213ENST00000513352 FABP4P15090 132 aa9.91□□□□□ -0.82
NUP54-213ENST00000513352 FOXI1Q12951 378 aa9.91□□□□□ -0.82
NUP54-213ENST00000513352 CD164L2Q6UWJ8 174 aa9.91□□□□□ -0.82
NUP54-213ENST00000513352 IFI27L1Q96BM0 104 aa9.91□□□□□ -0.82
NUP54-213ENST00000513352 USP17L23D6RBM5 183 aa9.9□□□□□ -0.82
NUP54-213ENST00000513352 LEPROTL1O95214 131 aa9.9□□□□□ -0.82
NUP54-213ENST00000513352 PRSS1P07477 247 aa9.9□□□□□ -0.82
NUP54-213ENST00000513352 UBE2D1P51668 147 aa9.9□□□□□ -0.82
NUP54-213ENST00000513352 WFDC2Q14508 124 aa9.9□□□□□ -0.82
NUP54-213ENST00000513352 PMVKQ15126 192 aa9.9□□□□□ -0.82
NUP54-213ENST00000513352 LRCOL1A6NCL2 159 aa9.89□□□□□ -0.83
NUP54-213ENST00000513352 H0Y8G0 127 aa9.89□□□□□ -0.83
NUP54-213ENST00000513352 COX7A2LO14548 114 aa9.89□□□□□ -0.83
NUP54-213ENST00000513352 MALP21145 153 aa9.89□□□□□ -0.83
NUP54-213ENST00000513352 C5orf38Q86SI9 138 aa9.89□□□□□ -0.83
NUP54-213ENST00000513352 CST9LQ9H4G1 147 aa9.89□□□□□ -0.83
NUP54-213ENST00000513352 HSPB8Q9UJY1 196 aa9.89□□□□□ -0.83
NUP54-213ENST00000513352 C14orf177Q52M58 125 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms