RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 GAGE12BA1L429 117 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 C9orf118A6NHY6 69 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 H3BRM9 83 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 H7C423 109 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 GAGE7O76087 117 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 GAGE12FP0CL80 117 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 GAGE12GP0CL81 117 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 GAGE12IP0CL82 117 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 GCSHP23434 173 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 KRTAP10-3P60369 221 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 VAMP3Q15836 100 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 AMMECR1LQ6DCA0 310 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 Q6ZTI0 123 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 PHLDA1Q8WV24 401 aaPredicted RBP4.98□□□□□ -1.61
USP39-219ENST00000496047 HIST1H4GQ99525 98 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 GEMIN7Q9H840 131 aaKnown RBP4.98□□□□□ -1.61
USP39-219ENST00000496047 TGP01266 2768 aa4.98□□□□□ -1.61
USP39-219ENST00000496047 IGLV4-69A0A075B6H9 119 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 IGKV2D-26A0A0A0MRZ7 120 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 LYRM9A8MSI8 78 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 LEPROTO15243 131 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 SMIM13P0DJ93 91 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 P0DMU3 169 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 FAM231AP0DMU4 169 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 FAM231CP0DMU5 169 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 MRPS36P82909 103 aaKnown RBP4.97□□□□□ -1.61
USP39-219ENST00000496047 GTF2H5Q6ZYL4 71 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 CEND1Q8N111 149 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 LINC00469Q8N7U9 141 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 ZNF479Q96JC4 524 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 TMEM243Q9BU79 118 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 GTSF1LQ9H1H1 148 aa4.97□□□□□ -1.61
USP39-219ENST00000496047 MAP1AP78559 2803 aaPredicted RBP4.97□□□□□ -1.61
USP39-219ENST00000496047 SVEP1Q4LDE5 3571 aa4.96□□□□□ -1.61
USP39-219ENST00000496047 TINCRA0A1B0GVN0 87 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 GAGE12JA6NER3 117 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 GAGE4Q13068 117 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 GAGE5Q13069 117 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 SRSF9Q13242 221 aaKnown RBP eCLIP4.96□□□□□ -1.62
USP39-219ENST00000496047 KRTAP19-4Q3LI73 84 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 GAGE13Q4V321 117 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 LYRM7Q5U5X0 104 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 CSNK1G2-AS1Q8NCQ2 148 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 OR5A1Q8NGJ0 315 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 AMELXQ99217 191 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 CHCHD7Q9BUK0 85 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 UBE2D4Q9Y2X8 147 aa4.96□□□□□ -1.62
USP39-219ENST00000496047 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.95□□□□□ -1.62
USP39-219ENST00000496047 IGHV3-38A0A0C4DH36 116 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 TMEM223A0PJW6 202 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 IGKV2-29A2NJV5 120 aaPredicted RBP4.95□□□□□ -1.62
USP39-219ENST00000496047 TMEM238C9JI98 176 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 J3QQQ9 107 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 PLA2G1BP04054 148 aaKnown RBP4.95□□□□□ -1.62
USP39-219ENST00000496047 PRM2P04554 102 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 MIFP14174 115 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 ZNF22P17026 224 aaPredicted RBP4.95□□□□□ -1.62
USP39-219ENST00000496047 EMP1P54849 157 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 UBE2D3P61077 147 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 UBE2D2P62837 147 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 HERVK_113P63121 156 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 LCE5AQ5TCM9 118 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 SLC25A29Q8N8R3 303 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 DEFB104AQ8WTQ1 72 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 TP73-AS1Q9UF72 201 aa4.95□□□□□ -1.62
USP39-219ENST00000496047 CSDC2Q9Y534 153 aaKnown RBP4.95□□□□□ -1.62
USP39-219ENST00000496047 PLAC8L1A1L4L8 177 aa4.94□□□□□ -1.62
USP39-219ENST00000496047 TAX1BP3O14907 124 aa4.94□□□□□ -1.62
USP39-219ENST00000496047 GIG44P09565 113 aaPredicted RBP4.94□□□□□ -1.62
USP39-219ENST00000496047 Q6ZUT4 128 aa4.94□□□□□ -1.62
USP39-219ENST00000496047 C3orf56Q8N813 242 aa4.94□□□□□ -1.62
USP39-219ENST00000496047 COPS9Q8WXC6 57 aa4.94□□□□□ -1.62
USP39-219ENST00000496047 TM2D2Q9BX73 214 aa4.94□□□□□ -1.62
USP39-219ENST00000496047 SPANXB1Q9NS25 103 aaPredicted RBP4.94□□□□□ -1.62
USP39-219ENST00000496047 NHP2Q9NX24 153 aaKnown RBP4.94□□□□□ -1.62
USP39-219ENST00000496047 A0A0J9YXV3 536 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 DEFB130BP0DP73 79 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 DEFB130AP0DP74 79 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 FABP2P12104 132 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 TIRAPP58753 221 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 DAD1P61803 113 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 ANK2Q01484 3957 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 UBE2V1Q13404 147 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 Q6ZSN1 163 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 WFDC9Q8NEX5 89 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 TTTY13Q9BZ97 58 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 PRO0255Q9UI72 69 aa4.93□□□□□ -1.62
USP39-219ENST00000496047 NOTCH3Q9UM47 2321 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 CUBNO60494 3623 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 IGHV1-58A0A0C4DH39 117 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 GAGE10A6NGK3 116 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 RPL24P83731 157 aaKnown RBP4.92□□□□□ -1.62
USP39-219ENST00000496047 CIRBPQ14011 172 aaKnown RBP4.92□□□□□ -1.62
USP39-219ENST00000496047 DEFB135Q30KP9 77 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 Q6ZVH6 145 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 SH2D6Q7Z4S9 175 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 LINC00612Q8N6U2 182 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 MAPKAPK5-AS1Q8N8E1 139 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 ATP6V0E2Q8NHE4 81 aa4.92□□□□□ -1.62
USP39-219ENST00000496047 RAB37Q96AX2 223 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms