RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 HIGD2BQ4VC39 106 aa8.13□□□□□ -1.11
PTPRF-214ENST00000496043 NAT8BQ9UHF3 227 aa8.13□□□□□ -1.11
PTPRF-214ENST00000496043 A0A087WYN8 130 aa8.12□□□□□ -1.11
PTPRF-214ENST00000496043 FOXI1Q12951 378 aa8.12□□□□□ -1.11
PTPRF-214ENST00000496043 SS18Q15532 418 aa8.12□□□□□ -1.11
PTPRF-214ENST00000496043 MRPL52Q86TS9 123 aaKnown RBP8.12□□□□□ -1.11
PTPRF-214ENST00000496043 CDC42SE2Q9NRR3 84 aa8.12□□□□□ -1.11
PTPRF-214ENST00000496043 NAT8Q9UHE5 227 aa8.12□□□□□ -1.11
PTPRF-214ENST00000496043 C9JQL5 133 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 SMKR1H3BMG3 65 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 CCL25O15444 150 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 FCER1GP30273 86 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 XCL1P47992 114 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 COX6A2Q02221 97 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 SMAGPQ0VAQ4 97 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 ADIRFQ15847 76 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 ZNF664Q8N3J9 261 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 SMDT1Q9H4I9 107 aa8.11□□□□□ -1.11
PTPRF-214ENST00000496043 GVQW2A0A096LPI5 108 aaPredicted RBP8.1□□□□□ -1.11
PTPRF-214ENST00000496043 IGHV1-58A0A0C4DH39 117 aa8.1□□□□□ -1.11
PTPRF-214ENST00000496043 C7orf77A4D0Y5 90 aa8.1□□□□□ -1.11
PTPRF-214ENST00000496043 CHTF8P0CG12 524 aa8.1□□□□□ -1.11
PTPRF-214ENST00000496043 SUMO2P61956 95 aaKnown RBP8.1□□□□□ -1.11
PTPRF-214ENST00000496043 FAM104BQ5XKR9 115 aa8.1□□□□□ -1.11
PTPRF-214ENST00000496043 SPACA4Q8TDM5 124 aa8.1□□□□□ -1.11
PTPRF-214ENST00000496043 KIR2DL4Q99706 377 aa8.1□□□□□ -1.11
PTPRF-214ENST00000496043 A0A1B0GW15 77 aa8.09□□□□□ -1.11
PTPRF-214ENST00000496043 SMIM27A0A1W2PRY6 76 aa8.09□□□□□ -1.11
PTPRF-214ENST00000496043 LINC00862A6NCI5 91 aa8.09□□□□□ -1.11
PTPRF-214ENST00000496043 PPP1R2P9O14990 202 aa8.09□□□□□ -1.11
PTPRF-214ENST00000496043 SRSF3P84103 164 aaKnown RBP8.09□□□□□ -1.11
PTPRF-214ENST00000496043 CD164L2Q6UWJ8 174 aa8.09□□□□□ -1.11
PTPRF-214ENST00000496043 NRACQ8N912 160 aa8.09□□□□□ -1.11
PTPRF-214ENST00000496043 PRSS3P2Q8NHM4 247 aa8.09□□□□□ -1.11
PTPRF-214ENST00000496043 PLAC8Q9NZF1 115 aa8.09□□□□□ -1.11
PTPRF-214ENST00000496043 CAMPP49913 170 aa8.08□□□□□ -1.12
PTPRF-214ENST00000496043 HNRNPA3P51991 378 aaKnown RBP8.08□□□□□ -1.12
PTPRF-214ENST00000496043 MAJINQ3KP22 176 aa8.08□□□□□ -1.12
PTPRF-214ENST00000496043 MRPL51Q4U2R6 128 aaKnown RBP8.08□□□□□ -1.12
PTPRF-214ENST00000496043 CLLU1Q5K131 121 aa8.08□□□□□ -1.12
PTPRF-214ENST00000496043 SERTAD4-AS1Q5TG53 156 aa8.08□□□□□ -1.12
PTPRF-214ENST00000496043 TMEM18Q96B42 140 aa8.08□□□□□ -1.12
PTPRF-214ENST00000496043 CSDC2Q9Y534 153 aaKnown RBP8.08□□□□□ -1.12
PTPRF-214ENST00000496043 C1orf196B1AJZ1 125 aa8.07□□□□□ -1.12
PTPRF-214ENST00000496043 ZNF561-AS1K7EIQ3 104 aa8.07□□□□□ -1.12
PTPRF-214ENST00000496043 CKS2P33552 79 aa8.07□□□□□ -1.12
PTPRF-214ENST00000496043 C7orf33Q8WU49 177 aa8.07□□□□□ -1.12
PTPRF-214ENST00000496043 C20orf78Q9BR46 151 aa8.07□□□□□ -1.12
PTPRF-214ENST00000496043 PKIGQ9Y2B9 76 aa8.07□□□□□ -1.12
PTPRF-214ENST00000496043 TRBV24-1A0A075B6N3 115 aa8.06□□□□□ -1.12
PTPRF-214ENST00000496043 IGKV2-24A0A0C4DH68 120 aa8.06□□□□□ -1.12
PTPRF-214ENST00000496043 TCAPO15273 167 aa8.06□□□□□ -1.12
PTPRF-214ENST00000496043 S100A8P05109 93 aa8.06□□□□□ -1.12
PTPRF-214ENST00000496043 Q6ZRU5 148 aa8.06□□□□□ -1.12
PTPRF-214ENST00000496043 UBE2D4Q9Y2X8 147 aa8.06□□□□□ -1.12
PTPRF-214ENST00000496043 F8W036 122 aa8.05□□□□□ -1.12
PTPRF-214ENST00000496043 MALP21145 153 aa8.05□□□□□ -1.12
PTPRF-214ENST00000496043 RAB14P61106 215 aa8.05□□□□□ -1.12
PTPRF-214ENST00000496043 RPL32P62910 135 aaKnown RBP8.05□□□□□ -1.12
PTPRF-214ENST00000496043 STPG4Q8N801 248 aa8.05□□□□□ -1.12
PTPRF-214ENST00000496043 LINC00526Q96FQ7 95 aa8.05□□□□□ -1.12
PTPRF-214ENST00000496043 TIMM21Q9BVV7 248 aa8.05□□□□□ -1.12
PTPRF-214ENST00000496043 LINC00474Q9P2X8 69 aa8.05□□□□□ -1.12
PTPRF-214ENST00000496043 LRP1Q07954 4544 aaKnown RBP8.05□□□□□ -1.12
PTPRF-214ENST00000496043 TNFRSF6BO95407 300 aa8.04□□□□□ -1.12
PTPRF-214ENST00000496043 HBBP68871 147 aa8.04□□□□□ -1.12
PTPRF-214ENST00000496043 SYCNQ0VAF6 134 aa8.04□□□□□ -1.12
PTPRF-214ENST00000496043 CARD19Q96LW7 228 aa8.04□□□□□ -1.12
PTPRF-214ENST00000496043 A0A096LNI7 61 aa8.03□□□□□ -1.12
PTPRF-214ENST00000496043 TRAV13-1A0A0B4J241 112 aa8.03□□□□□ -1.12
PTPRF-214ENST00000496043 COX7A2LO14548 114 aa8.03□□□□□ -1.12
PTPRF-214ENST00000496043 PHOX2AO14813 284 aa8.03□□□□□ -1.12
PTPRF-214ENST00000496043 MRPL54Q6P161 138 aaKnown RBP8.03□□□□□ -1.12
PTPRF-214ENST00000496043 FAT3Q8TDW7 4589 aa8.03□□□□□ -1.12
PTPRF-214ENST00000496043 D6R8Y8 96 aa8.02□□□□□ -1.13
PTPRF-214ENST00000496043 PPBPP02775 128 aa8.02□□□□□ -1.13
PTPRF-214ENST00000496043 RNASE13Q5GAN3 156 aaKnown RBP8.02□□□□□ -1.13
PTPRF-214ENST00000496043 IGLV4-69A0A075B6H9 119 aa8.01□□□□□ -1.13
PTPRF-214ENST00000496043 A0A1B0GXF2 115 aa8.01□□□□□ -1.13
PTPRF-214ENST00000496043 APOMO95445 188 aa8.01□□□□□ -1.13
PTPRF-214ENST00000496043 C5orf38Q86SI9 138 aa8.01□□□□□ -1.13
PTPRF-214ENST00000496043 SMIM2Q9BVW6 85 aa8.01□□□□□ -1.13
PTPRF-214ENST00000496043 PKHD1L1Q86WI1 4243 aa8□□□□□ -1.13
PTPRF-214ENST00000496043 Q6ZUT4 128 aa8□□□□□ -1.13
PTPRF-214ENST00000496043 C2orf48Q96LS8 159 aa8□□□□□ -1.13
PTPRF-214ENST00000496043 LOC107984640A0A0U1RRK4 108 aa7.99□□□□□ -1.13
PTPRF-214ENST00000496043 NPYP01303 97 aa7.99□□□□□ -1.13
PTPRF-214ENST00000496043 RAB5AP20339 215 aa7.99□□□□□ -1.13
PTPRF-214ENST00000496043 RPL39P62891 51 aaKnown RBP7.99□□□□□ -1.13
PTPRF-214ENST00000496043 TMEM136Q6ZRR5 245 aa7.99□□□□□ -1.13
PTPRF-214ENST00000496043 ATP5L2Q7Z4Y8 100 aa7.99□□□□□ -1.13
PTPRF-214ENST00000496043 CAMK2N2Q96S95 79 aa7.99□□□□□ -1.13
PTPRF-214ENST00000496043 SPANXA1Q9NS26 97 aa7.99□□□□□ -1.13
PTPRF-214ENST00000496043 MRPS36P82909 103 aaKnown RBP7.98□□□□□ -1.13
PTPRF-214ENST00000496043 GAGE2BQ13066 116 aa7.98□□□□□ -1.13
PTPRF-214ENST00000496043 COMMD7Q86VX2 200 aa7.98□□□□□ -1.13
PTPRF-214ENST00000496043 ORMDL3Q8N138 153 aa7.98□□□□□ -1.13
PTPRF-214ENST00000496043 PTTG1IPP53801 180 aa7.97□□□□□ -1.13
PTPRF-214ENST00000496043 ANAPC16Q96DE5 110 aa7.97□□□□□ -1.13
PTPRF-214ENST00000496043 PRELID3AQ96N28 172 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms