RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816	UBE2D4	Q9Y2X8	147 aa		11.33	□□□□□ -0.6
BRD9-208	ENST00000489816	TRAV13-1	A0A0B4J241	112 aa		11.33	□□□□□ -0.6
BRD9-208	ENST00000489816	IGKV3OR2-268	A0A0C4DH90	116 aa		11.33	□□□□□ -0.6
BRD9-208	ENST00000489816	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	11.33	□□□□□ -0.6
BRD9-208	ENST00000489816	GAGE12J	A6NER3	117 aa		11.32	□□□□□ -0.6
BRD9-208	ENST00000489816	GAGE4	Q13068	117 aa		11.32	□□□□□ -0.6
BRD9-208	ENST00000489816	GAGE5	Q13069	117 aa		11.32	□□□□□ -0.6
BRD9-208	ENST00000489816	NDUFA12	Q9UI09	145 aa		11.32	□□□□□ -0.6
BRD9-208	ENST00000489816	OTOG	Q6ZRI0	2925 aa		11.32	□□□□□ -0.6
BRD9-208	ENST00000489816	ATR	Q13535	2644 aa		11.32	□□□□□ -0.6
BRD9-208	ENST00000489816	COX6A2	Q02221	97 aa		11.31	□□□□□ -0.6
BRD9-208	ENST00000489816	GAGE12H	A6NDE8	117 aa		11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	LOC100131303	A0A0U1RQF7	123 aa		11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	GAGE7	O76087	117 aa		11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	GAGE12F	P0CL80	117 aa		11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	GAGE12G	P0CL81	117 aa		11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	GAGE12I	P0CL82	117 aa		11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	MRPS36	P82909	103 aa	Known RBP	11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	LINC01006	Q8NI28	216 aa		11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	TENM1	Q9UKZ4	2725 aa		11.3	□□□□□ -0.6
BRD9-208	ENST00000489816	UBE2D3	P61077	147 aa		11.29	□□□□□ -0.6
BRD9-208	ENST00000489816	UBE2D2	P62837	147 aa		11.29	□□□□□ -0.6
BRD9-208	ENST00000489816	ERG28	Q9UKR5	140 aa		11.28	□□□□□ -0.6
BRD9-208	ENST00000489816		C9JAW5	83 aa		11.28	□□□□□ -0.6
BRD9-208	ENST00000489816	IGHV1-58	A0A0C4DH39	117 aa		11.27	□□□□□ -0.6
BRD9-208	ENST00000489816	IGHV3-33	P01772	117 aa		11.27	□□□□□ -0.6
BRD9-208	ENST00000489816	LRRC75A-AS1	Q8N1F1	130 aa		11.27	□□□□□ -0.6
BRD9-208	ENST00000489816	PYGO1	Q9Y3Y4	419 aa		11.27	□□□□□ -0.6
BRD9-208	ENST00000489816	TRGV2	A0A075B6R0	118 aa		11.27	□□□□□ -0.61
BRD9-208	ENST00000489816		A8MTW9	85 aa		11.27	□□□□□ -0.61
BRD9-208	ENST00000489816	TMEM238	C9JI98	176 aa		11.27	□□□□□ -0.61
BRD9-208	ENST00000489816		J3QR89	54 aa		11.27	□□□□□ -0.61
BRD9-208	ENST00000489816	VSIG2	Q96IQ7	327 aa		11.26	□□□□□ -0.61
BRD9-208	ENST00000489816	NTM-AS1	Q6ZSK4	140 aa		11.26	□□□□□ -0.61
BRD9-208	ENST00000489816	TMEM263	Q8WUH6	116 aa	Known RBP	11.26	□□□□□ -0.61
BRD9-208	ENST00000489816	RS1	O15537	224 aa		11.26	□□□□□ -0.61
BRD9-208	ENST00000489816	FOXI1	Q12951	378 aa		11.26	□□□□□ -0.61
BRD9-208	ENST00000489816	SIGMAR1	Q99720	223 aa		11.25	□□□□□ -0.61
BRD9-208	ENST00000489816	LITAF	Q99732	161 aa		11.24	□□□□□ -0.61
BRD9-208	ENST00000489816	BEAN1	Q3B7T3	259 aa		11.24	□□□□□ -0.61
BRD9-208	ENST00000489816	CARD19	Q96LW7	228 aa		11.24	□□□□□ -0.61
BRD9-208	ENST00000489816	SPANXA1	Q9NS26	97 aa		11.24	□□□□□ -0.61
BRD9-208	ENST00000489816	TMEM101	Q96IK0	257 aa		11.23	□□□□□ -0.61
BRD9-208	ENST00000489816	ANK3	Q12955	4377 aa	Known RBP	11.23	□□□□□ -0.61
BRD9-208	ENST00000489816	GIG44	P09565	113 aa	Predicted RBP	11.23	□□□□□ -0.61
BRD9-208	ENST00000489816	RPL36A	P83881	106 aa	Known RBP	11.23	□□□□□ -0.61
BRD9-208	ENST00000489816	FHL3	Q13643	280 aa		11.23	□□□□□ -0.61
BRD9-208	ENST00000489816	RPL36AL	Q969Q0	106 aa	Known RBP	11.23	□□□□□ -0.61
BRD9-208	ENST00000489816	C1QTNF4	Q9BXJ3	329 aa		11.23	□□□□□ -0.61
BRD9-208	ENST00000489816	TINCR	A0A1B0GVN0	87 aa		11.22	□□□□□ -0.61
BRD9-208	ENST00000489816	ANKRD29	Q8N6D5	301 aa		11.22	□□□□□ -0.61
BRD9-208	ENST00000489816		Q9H8V8	135 aa		11.22	□□□□□ -0.61
BRD9-208	ENST00000489816	TRIAP1	O43715	76 aa		11.21	□□□□□ -0.61
BRD9-208	ENST00000489816	DEFB130B	P0DP73	79 aa		11.21	□□□□□ -0.61
BRD9-208	ENST00000489816	DEFB130A	P0DP74	79 aa		11.21	□□□□□ -0.61
BRD9-208	ENST00000489816	LINC00242	Q5T6M2	205 aa		11.21	□□□□□ -0.61
BRD9-208	ENST00000489816		K7EQD1	137 aa		11.21	□□□□□ -0.62
BRD9-208	ENST00000489816	SLC25A20	O43772	301 aa		11.21	□□□□□ -0.62
BRD9-208	ENST00000489816	KRTAP1-1	Q07627	177 aa		11.21	□□□□□ -0.62
BRD9-208	ENST00000489816	CLEC2B	Q92478	149 aa		11.21	□□□□□ -0.62
BRD9-208	ENST00000489816	LYRM7	Q5U5X0	104 aa		11.19	□□□□□ -0.62
BRD9-208	ENST00000489816	TOMM7	Q9P0U1	55 aa		11.19	□□□□□ -0.62
BRD9-208	ENST00000489816	GAGE6	Q13070	117 aa		11.19	□□□□□ -0.62
BRD9-208	ENST00000489816	EDA2R	Q9HAV5	297 aa		11.19	□□□□□ -0.62
BRD9-208	ENST00000489816		A0A096LPF7	62 aa		11.18	□□□□□ -0.62
BRD9-208	ENST00000489816	TRGV4	A0A0C4DH28	118 aa		11.18	□□□□□ -0.62
BRD9-208	ENST00000489816	TRRAP	Q9Y4A5	3859 aa		11.18	□□□□□ -0.62
BRD9-208	ENST00000489816	DNAJC30	Q96LL9	226 aa		11.18	□□□□□ -0.62
BRD9-208	ENST00000489816	TRBV20-1	A0A075B6N2	111 aa		11.18	□□□□□ -0.62
BRD9-208	ENST00000489816	TEN1	Q86WV5	123 aa		11.18	□□□□□ -0.62
BRD9-208	ENST00000489816	TMEM86B	Q8N661	226 aa		11.18	□□□□□ -0.62
BRD9-208	ENST00000489816	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	11.17	□□□□□ -0.62
BRD9-208	ENST00000489816	UBE2L6	O14933	153 aa		11.17	□□□□□ -0.62
BRD9-208	ENST00000489816	MEIG1	Q5JSS6	88 aa		11.17	□□□□□ -0.62
BRD9-208	ENST00000489816	NTN5	Q8WTR8	489 aa	Predicted RBP	11.17	□□□□□ -0.62
BRD9-208	ENST00000489816		A0A0B4J2C4	111 aa		11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	MIA	Q16674	131 aa		11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	ZFAND6	Q6FIF0	208 aa		11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	PRIMA1	Q86XR5	153 aa		11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	SPATA3	Q8NHX4	192 aa		11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	TEP1	Q99973	2627 aa	Known RBP	11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	DEFB4A	O15263	64 aa		11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	MT-ATP8	P03928	68 aa		11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	TRAV25	A0A0B4J276	109 aa		11.16	□□□□□ -0.62
BRD9-208	ENST00000489816	FLNB	O75369	2602 aa	Known RBP	11.15	□□□□□ -0.62
BRD9-208	ENST00000489816	TEX49	A0A1B0GTD5	131 aa		11.15	□□□□□ -0.62
BRD9-208	ENST00000489816	RPL13A	P40429	203 aa	Known RBP	11.15	□□□□□ -0.62
BRD9-208	ENST00000489816	CDIP1	Q9H305	208 aa		11.15	□□□□□ -0.62
BRD9-208	ENST00000489816	PLAC8L1	A1L4L8	177 aa		11.15	□□□□□ -0.62
BRD9-208	ENST00000489816	CRLF1	O75462	422 aa		11.14	□□□□□ -0.63
BRD9-208	ENST00000489816	PIK3CD-AS1	Q5SR53	167 aa		11.14	□□□□□ -0.63
BRD9-208	ENST00000489816	PPDPFL	Q8WWR9	84 aa		11.14	□□□□□ -0.63
BRD9-208	ENST00000489816	C11orf68	Q9H3H3	251 aa	Known RBP	11.14	□□□□□ -0.63
BRD9-208	ENST00000489816	ICOS	Q9Y6W8	199 aa		11.14	□□□□□ -0.63
BRD9-208	ENST00000489816	TRAV4	A0A0B4J268	109 aa		11.14	□□□□□ -0.63
BRD9-208	ENST00000489816	LINC01620	Q4KN68	170 aa		11.14	□□□□□ -0.63
BRD9-208	ENST00000489816	SPATA25	Q9BR10	227 aa		11.14	□□□□□ -0.63
BRD9-208	ENST00000489816	SMIM1	B2RUZ4	78 aa		11.13	□□□□□ -0.63
BRD9-208	ENST00000489816	CRYBA4	P53673	196 aa		11.13	□□□□□ -0.63
BRD9-208	ENST00000489816	XG	P55808	180 aa		11.13	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms