RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 FANCD2OSQ96PS1 177 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 TRAV26-2A0A0B4J265 109 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 ATP6V0E1O15342 81 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 IGKV1-17P01599 117 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 VMA21Q3ZAQ7 101 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 FP248Q71RG6 208 aaPredicted RBP5.66□□□□□ -1.5
USP4-211ENST00000485450 USMG5Q96IX5 58 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 SPG11Q96JI7 2443 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 IGLV4-69A0A075B6H9 119 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.65□□□□□ -1.5
USP4-211ENST00000485450 TSPEAR-AS2P59090 65 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 PEMTQ9UBM1 199 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 TEP1Q99973 2627 aaKnown RBP5.65□□□□□ -1.5
USP4-211ENST00000485450 C11orf86A6NJI1 115 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 TRIAP1O43715 76 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 CXCL5P42830 114 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 C1orf195Q5TG92 126 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 LINC00643Q86TS7 51 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 KLK15Q9H2R5 256 aa5.65□□□□□ -1.5
USP4-211ENST00000485450 H7C2G1 150 aa5.65□□□□□ -1.51
USP4-211ENST00000485450 I3L2K1 104 aa5.65□□□□□ -1.51
USP4-211ENST00000485450 Q8TAT8 98 aa5.65□□□□□ -1.51
USP4-211ENST00000485450 TP53TG1Q9Y2A0 90 aa5.65□□□□□ -1.51
USP4-211ENST00000485450 IGHV4-4A0A075B6R2 117 aa5.64□□□□□ -1.51
USP4-211ENST00000485450 TRACP01848 142 aa5.64□□□□□ -1.51
USP4-211ENST00000485450 C2orf66Q6UXQ4 117 aa5.64□□□□□ -1.51
USP4-211ENST00000485450 C14orf178Q8N769 122 aaPredicted RBP5.64□□□□□ -1.51
USP4-211ENST00000485450 RPL27AP46776 148 aaKnown RBP5.64□□□□□ -1.51
USP4-211ENST00000485450 Q1RN00 199 aa5.64□□□□□ -1.51
USP4-211ENST00000485450 PLXNB1O43157 2135 aa5.64□□□□□ -1.51
USP4-211ENST00000485450 DNAH6Q9C0G6 4158 aa5.64□□□□□ -1.51
USP4-211ENST00000485450 TMEM223A0PJW6 202 aa5.64□□□□□ -1.51
USP4-211ENST00000485450 C6orf226Q5I0X4 101 aa5.64□□□□□ -1.51
USP4-211ENST00000485450 ZNF256Q9Y2P7 627 aaPredicted RBP5.64□□□□□ -1.51
USP4-211ENST00000485450 HUWE1Q7Z6Z7 4374 aaKnown RBP5.63□□□□□ -1.51
USP4-211ENST00000485450 ACANP16112 2415 aa5.63□□□□□ -1.51
USP4-211ENST00000485450 TRBV7-1A0A0A6YYK4 115 aa5.63□□□□□ -1.51
USP4-211ENST00000485450 TRAV13-1A0A0B4J241 112 aa5.63□□□□□ -1.51
USP4-211ENST00000485450 CD28P10747 220 aa5.63□□□□□ -1.51
USP4-211ENST00000485450 SUMO2P61956 95 aaKnown RBP5.63□□□□□ -1.51
USP4-211ENST00000485450 MUSTN1Q8IVN3 82 aa5.63□□□□□ -1.51
USP4-211ENST00000485450 SLC50A1Q9BRV3 221 aa5.63□□□□□ -1.51
USP4-211ENST00000485450 HIVEP2P31629 2446 aa5.63□□□□□ -1.51
USP4-211ENST00000485450 IGKV3D-20A0A0C4DH25 116 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 BEAN1Q3B7T3 259 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 IGHV7-4-1A0A0J9YVY3 117 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 FHL2Q14192 279 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 LY6EQ16553 131 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 CCDC168Q8NDH2 2452 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 ATOX1O00244 68 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 APELAP0DMC3 54 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 ICOSQ9Y6W8 199 aa5.62□□□□□ -1.51
USP4-211ENST00000485450 LST1O00453 97 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 SPRY2O43597 315 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 LGALS3P17931 250 aaKnown RBP5.61□□□□□ -1.51
USP4-211ENST00000485450 EEF1AKMT3Q96AZ1 226 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 IGHV3-72A0A0B4J1Y9 119 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 K7EIM0 57 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 TSHBP01222 138 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 GPHB5Q86YW7 130 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 A0A0U1RQV1 116 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 COX6CP09669 75 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 U3KQE9 123 aa5.61□□□□□ -1.51
USP4-211ENST00000485450 DCANP1Q8TF63 244 aa5.6□□□□□ -1.51
USP4-211ENST00000485450 C11orf21Q9P2W6 132 aa5.6□□□□□ -1.51
USP4-211ENST00000485450 A0A0J9YX75 114 aa5.6□□□□□ -1.51
USP4-211ENST00000485450 IGIPA6NJ69 53 aa5.6□□□□□ -1.51
USP4-211ENST00000485450 K7EMT4 169 aa5.6□□□□□ -1.51
USP4-211ENST00000485450 LEPROTO15243 131 aa5.6□□□□□ -1.51
USP4-211ENST00000485450 C10orf99Q6UWK7 81 aa5.6□□□□□ -1.51
USP4-211ENST00000485450 SDHAF1A6NFY7 115 aa5.59□□□□□ -1.51
USP4-211ENST00000485450 SPANXN1Q5VSR9 72 aa5.59□□□□□ -1.51
USP4-211ENST00000485450 C22orf24Q9Y442 160 aa5.59□□□□□ -1.51
USP4-211ENST00000485450 M0R381 172 aa5.59□□□□□ -1.51
USP4-211ENST00000485450 TMEM141Q96I45 108 aa5.59□□□□□ -1.51
USP4-211ENST00000485450 ZNF876PQ49A33 203 aa5.58□□□□□ -1.52
USP4-211ENST00000485450 DNAH1Q9P2D7 4330 aa5.58□□□□□ -1.52
USP4-211ENST00000485450 G3V318 75 aa5.58□□□□□ -1.52
USP4-211ENST00000485450 CLEC2BQ92478 149 aa5.58□□□□□ -1.52
USP4-211ENST00000485450 RPL39LQ96EH5 51 aaKnown RBP5.58□□□□□ -1.52
USP4-211ENST00000485450 SMAD5-AS1Q9Y6J3 95 aa5.58□□□□□ -1.52
USP4-211ENST00000485450 LYSTQ99698 3801 aa5.58□□□□□ -1.52
USP4-211ENST00000485450 TIMM17AQ99595 171 aa5.58□□□□□ -1.52
USP4-211ENST00000485450 ZFAND3Q9H8U3 227 aa5.57□□□□□ -1.52
USP4-211ENST00000485450 MEGF8Q7Z7M0 2845 aa5.57□□□□□ -1.52
USP4-211ENST00000485450 LYPD5Q6UWN5 251 aa5.57□□□□□ -1.52
USP4-211ENST00000485450 PPP1R17O96001 155 aa5.57□□□□□ -1.52
USP4-211ENST00000485450 RPL18AQ02543 176 aaKnown RBP5.57□□□□□ -1.52
USP4-211ENST00000485450 IGFL4Q6B9Z1 124 aa5.57□□□□□ -1.52
USP4-211ENST00000485450 TIMM21Q9BVV7 248 aa5.57□□□□□ -1.52
USP4-211ENST00000485450 A8MTW9 85 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 PRAC2D3DTV9 90 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 I3L3M4 83 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 SERP2Q8N6R1 65 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 LITAFQ99732 161 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 A0A0J9YXY3 114 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 IGLV1-51P01701 117 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 C18orf65Q6ZTR6 163 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 VWFP04275 2813 aa5.56□□□□□ -1.52
USP4-211ENST00000485450 TRAV8-3A0A0A6YYJ7 113 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms