RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 ST20Q9HBF5 79 aa14.03□□□□□ -0.16
LIME1-203ENST00000465591 C7orf77A4D0Y5 90 aa14.02□□□□□ -0.17
LIME1-203ENST00000465591 H7C423 109 aa14.02□□□□□ -0.17
LIME1-203ENST00000465591 SLPIP03973 132 aa14.02□□□□□ -0.17
LIME1-203ENST00000465591 ESDP10768 282 aa14.02□□□□□ -0.17
LIME1-203ENST00000465591 HBBP68871 147 aa14.02□□□□□ -0.17
LIME1-203ENST00000465591 hDV102S1A0JD36 115 aa14.01□□□□□ -0.17
LIME1-203ENST00000465591 GAGE12HA6NDE8 117 aa14.01□□□□□ -0.17
LIME1-203ENST00000465591 PANO1I0J062 215 aa14.01□□□□□ -0.17
LIME1-203ENST00000465591 KRTAP10-4P60372 401 aaPredicted RBP14.01□□□□□ -0.17
LIME1-203ENST00000465591 SVBPQ8N300 66 aa14.01□□□□□ -0.17
LIME1-203ENST00000465591 MRAP2Q96G30 205 aa14.01□□□□□ -0.17
LIME1-203ENST00000465591 BTF3L4Q96K17 158 aa14.01□□□□□ -0.17
LIME1-203ENST00000465591 SNAPINO95295 136 aa14□□□□□ -0.17
LIME1-203ENST00000465591 PLA2G1BP04054 148 aaKnown RBP14□□□□□ -0.17
LIME1-203ENST00000465591 S100PP25815 95 aa14□□□□□ -0.17
LIME1-203ENST00000465591 SDIM1Q6ZPB5 146 aa14□□□□□ -0.17
LIME1-203ENST00000465591 SLC7A5P1Q8MH63 180 aa14□□□□□ -0.17
LIME1-203ENST00000465591 C15orf56Q8N910 161 aa14□□□□□ -0.17
LIME1-203ENST00000465591 RPS10P5Q9NQ39 176 aa14□□□□□ -0.17
LIME1-203ENST00000465591 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP14□□□□□ -0.17
LIME1-203ENST00000465591 A0A1B0GXF2 115 aa13.99□□□□□ -0.17
LIME1-203ENST00000465591 CNBPP62633 177 aaKnown RBP13.99□□□□□ -0.17
LIME1-203ENST00000465591 NRACQ8N912 160 aa13.99□□□□□ -0.17
LIME1-203ENST00000465591 TRBV27A0A0K0K1C4 114 aa13.98□□□□□ -0.17
LIME1-203ENST00000465591 CHCHD10Q8WYQ3 142 aaPredicted RBP13.98□□□□□ -0.17
LIME1-203ENST00000465591 TRAV9-1A0A075B6T8 112 aa13.97□□□□□ -0.17
LIME1-203ENST00000465591 FAM104BQ5XKR9 115 aa13.97□□□□□ -0.17
LIME1-203ENST00000465591 ZNF25P17030 456 aaPredicted RBP13.96□□□□□ -0.17
LIME1-203ENST00000465591 MRPL51Q4U2R6 128 aaKnown RBP13.96□□□□□ -0.17
LIME1-203ENST00000465591 PPP1R17O96001 155 aa13.95□□□□□ -0.18
LIME1-203ENST00000465591 OR5A1Q8NGJ0 315 aa13.95□□□□□ -0.18
LIME1-203ENST00000465591 FOXI1Q12951 378 aa13.94□□□□□ -0.18
LIME1-203ENST00000465591 SUMO2P61956 95 aaKnown RBP13.93□□□□□ -0.18
LIME1-203ENST00000465591 HIGD2BQ4VC39 106 aa13.93□□□□□ -0.18
LIME1-203ENST00000465591 MRPL52Q86TS9 123 aaKnown RBP13.93□□□□□ -0.18
LIME1-203ENST00000465591 AP5S1Q9NUS5 200 aa13.93□□□□□ -0.18
LIME1-203ENST00000465591 VCYO14598 125 aa13.92□□□□□ -0.18
LIME1-203ENST00000465591 CKS2P33552 79 aa13.92□□□□□ -0.18
LIME1-203ENST00000465591 TMEM101Q96IK0 257 aa13.92□□□□□ -0.18
LIME1-203ENST00000465591 CDC42SE2Q9NRR3 84 aa13.92□□□□□ -0.18
LIME1-203ENST00000465591 PKHD1L1Q86WI1 4243 aa13.91□□□□□ -0.18
LIME1-203ENST00000465591 LINC00959A0A1B0GUT2 108 aa13.91□□□□□ -0.18
LIME1-203ENST00000465591 XCL1P47992 114 aa13.91□□□□□ -0.18
LIME1-203ENST00000465591 LRP1Q07954 4544 aaKnown RBP13.91□□□□□ -0.18
LIME1-203ENST00000465591 CCL25O15444 150 aa13.9□□□□□ -0.18
LIME1-203ENST00000465591 PPBPP02775 128 aa13.9□□□□□ -0.18
LIME1-203ENST00000465591 CHTF8P0CG12 524 aa13.9□□□□□ -0.18
LIME1-203ENST00000465591 CIRBPQ14011 172 aaKnown RBP13.9□□□□□ -0.18
LIME1-203ENST00000465591 IGHV3-64A0A075B6Q5 118 aa13.89□□□□□ -0.19
LIME1-203ENST00000465591 FCER1GP30273 86 aa13.89□□□□□ -0.19
LIME1-203ENST00000465591 CFAP161Q6P656 301 aa13.89□□□□□ -0.19
LIME1-203ENST00000465591 GVQW2A0A096LPI5 108 aaPredicted RBP13.88□□□□□ -0.19
LIME1-203ENST00000465591 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.88□□□□□ -0.19
LIME1-203ENST00000465591 COX19Q49B96 90 aa13.88□□□□□ -0.19
LIME1-203ENST00000465591 ZNF664Q8N3J9 261 aa13.88□□□□□ -0.19
LIME1-203ENST00000465591 UBE2D4Q9Y2X8 147 aa13.87□□□□□ -0.19
LIME1-203ENST00000465591 TRBV24-1A0A075B6N3 115 aa13.86□□□□□ -0.19
LIME1-203ENST00000465591 D6R8Y8 96 aa13.86□□□□□ -0.19
LIME1-203ENST00000465591 RNASE13Q5GAN3 156 aaKnown RBP13.86□□□□□ -0.19
LIME1-203ENST00000465591 ORMDL3Q8N138 153 aa13.86□□□□□ -0.19
LIME1-203ENST00000465591 KIR2DL4Q99706 377 aa13.86□□□□□ -0.19
LIME1-203ENST00000465591 FAT3Q8TDW7 4589 aa13.86□□□□□ -0.19
LIME1-203ENST00000465591 TNFRSF6BO95407 300 aa13.85□□□□□ -0.19
LIME1-203ENST00000465591 RPL37AP61513 92 aaKnown RBP13.85□□□□□ -0.19
LIME1-203ENST00000465591 TMEM136Q6ZRR5 245 aa13.85□□□□□ -0.19
LIME1-203ENST00000465591 LINC00526Q96FQ7 95 aa13.85□□□□□ -0.19
LIME1-203ENST00000465591 C20orf78Q9BR46 151 aa13.85□□□□□ -0.19
LIME1-203ENST00000465591 PHOX2AO14813 284 aa13.84□□□□□ -0.19
LIME1-203ENST00000465591 HNRNPA3P51991 378 aaKnown RBP13.84□□□□□ -0.19
LIME1-203ENST00000465591 SPACA4Q8TDM5 124 aa13.84□□□□□ -0.19
LIME1-203ENST00000465591 GNB1LQ9BYB4 327 aa13.84□□□□□ -0.19
LIME1-203ENST00000465591 A0A087WYN8 130 aa13.83□□□□□ -0.2
LIME1-203ENST00000465591 KRTAP29-1A8MX34 341 aaPredicted RBP13.83□□□□□ -0.2
LIME1-203ENST00000465591 NPYP01303 97 aa13.83□□□□□ -0.2
LIME1-203ENST00000465591 RPL32P62910 135 aaKnown RBP13.83□□□□□ -0.2
LIME1-203ENST00000465591 COX6A2Q02221 97 aa13.83□□□□□ -0.2
LIME1-203ENST00000465591 SS18Q15532 418 aa13.83□□□□□ -0.2
LIME1-203ENST00000465591 Q6ZUT4 128 aa13.83□□□□□ -0.2
LIME1-203ENST00000465591 PRSS3P2Q8NHM4 247 aa13.83□□□□□ -0.2
LIME1-203ENST00000465591 PRELID3AQ96N28 172 aa13.83□□□□□ -0.2
LIME1-203ENST00000465591 CSDC2Q9Y534 153 aaKnown RBP13.83□□□□□ -0.2
LIME1-203ENST00000465591 CD164L2Q6UWJ8 174 aa13.82□□□□□ -0.2
LIME1-203ENST00000465591 SMIM2Q9BVW6 85 aa13.82□□□□□ -0.2
LIME1-203ENST00000465591 LAMTOR2Q9Y2Q5 125 aa13.82□□□□□ -0.2
LIME1-203ENST00000465591 IGHV1-58A0A0C4DH39 117 aa13.81□□□□□ -0.2
LIME1-203ENST00000465591 J3QL48 77 aa13.81□□□□□ -0.2
LIME1-203ENST00000465591 MT-ND6P03923 174 aa13.81□□□□□ -0.2
LIME1-203ENST00000465591 RPL39P62891 51 aaKnown RBP13.81□□□□□ -0.2
LIME1-203ENST00000465591 FAM104AQ969W3 186 aa13.81□□□□□ -0.2
LIME1-203ENST00000465591 SMCO4Q9NRQ5 59 aa13.8□□□□□ -0.2
LIME1-203ENST00000465591 TGIF2-C20orf24A0A0A6YYL0 155 aa13.79□□□□□ -0.2
LIME1-203ENST00000465591 TCAPO15273 167 aa13.79□□□□□ -0.2
LIME1-203ENST00000465591 DPH3Q96FX2 82 aa13.79□□□□□ -0.2
LIME1-203ENST00000465591 TIMM21Q9BVV7 248 aa13.79□□□□□ -0.2
LIME1-203ENST00000465591 TRAV13-1A0A0B4J241 112 aa13.77□□□□□ -0.21
LIME1-203ENST00000465591 IGKV2-24A0A0C4DH68 120 aa13.77□□□□□ -0.21
LIME1-203ENST00000465591 C1orf196B1AJZ1 125 aa13.77□□□□□ -0.21
LIME1-203ENST00000465591 MAP1LC3AQ9H492 121 aa13.77□□□□□ -0.21
LIME1-203ENST00000465591 PLAC8Q9NZF1 115 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 616 ms