RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 IGHV3-30P01768 117 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 IGHV3-30-5P0DP03 117 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 KRTAP10-9P60411 292 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 hADV29S1A0JD25 119 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 M0R2P5 195 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 CRLF1O75462 422 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 COX6B1P14854 86 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 ZNF22P17026 224 aaPredicted RBP6.37□□□□□ -1.39
USP40-203ENST00000427112 HERVK_113P63121 156 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 NSUN5P1Q3KNT7 163 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 PDZD2O15018 2839 aa6.37□□□□□ -1.39
USP40-203ENST00000427112 ATXN8Q156A1 80 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 CDIP1Q9H305 208 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 F8P00451 2351 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 VWFP04275 2813 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 A6NDX4 124 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 IGHV3-30-3P0DP02 117 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 C10orf105Q8TEF2 133 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 TIMM21Q9BVV7 248 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 VPREB3Q9UKI3 123 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 A0A0J9YX75 114 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 TMEM61Q8N0U2 210 aa6.36□□□□□ -1.39
USP40-203ENST00000427112 IGLV4-3A0A075B6K6 122 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 SMIM9A6NGZ8 99 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 TEP1Q99973 2627 aaKnown RBP6.35□□□□□ -1.39
USP40-203ENST00000427112 TRGV1A0A0A0MS02 117 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 RNF152Q8N8N0 203 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 DYNLRB2Q8TF09 96 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 FAM110AQ9BQ89 295 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 SPATA25Q9BR10 227 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 NDUFA12Q9UI09 145 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 HIVEP1P15822 2718 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 IGHV4-4A0A075B6R2 117 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 A0A096LPF7 62 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 TINCRA0A1B0GVN0 87 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 A0A1B0GX51 115 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 RHODO00212 210 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 RBM3P98179 157 aaKnown RBP6.35□□□□□ -1.39
USP40-203ENST00000427112 USMG5Q96IX5 58 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 LINC00467Q9BRT7 94 aa6.35□□□□□ -1.39
USP40-203ENST00000427112 RPL35AP18077 110 aaKnown RBP6.34□□□□□ -1.39
USP40-203ENST00000427112 UBE2D1P51668 147 aa6.34□□□□□ -1.39
USP40-203ENST00000427112 DSCR8Q96T75 97 aa6.34□□□□□ -1.39
USP40-203ENST00000427112 KLLNB2CW77 178 aa6.34□□□□□ -1.39
USP40-203ENST00000427112 TRIAP1O43715 76 aa6.34□□□□□ -1.39
USP40-203ENST00000427112 PPP1R17O96001 155 aa6.34□□□□□ -1.39
USP40-203ENST00000427112 FAM19A5Q7Z5A7 132 aaPredicted RBP6.34□□□□□ -1.39
USP40-203ENST00000427112 SLC25A29Q8N8R3 303 aa6.34□□□□□ -1.39
USP40-203ENST00000427112 C20orf203Q8NBC4 194 aa6.34□□□□□ -1.39
USP40-203ENST00000427112 CDKN2A-AS1Q9UH64 79 aa6.34□□□□□ -1.39
USP40-203ENST00000427112 FLNBO75369 2602 aaKnown RBP6.34□□□□□ -1.39
USP40-203ENST00000427112 UNC79Q9P2D8 2635 aa6.34□□□□□ -1.4
USP40-203ENST00000427112 A0A0J9YXY3 114 aa6.34□□□□□ -1.4
USP40-203ENST00000427112 I3L3M4 83 aa6.34□□□□□ -1.4
USP40-203ENST00000427112 TAL2Q16559 108 aa6.34□□□□□ -1.4
USP40-203ENST00000427112 MRPL53Q96EL3 112 aaKnown RBP6.34□□□□□ -1.4
USP40-203ENST00000427112 CLPSL2Q6UWE3 100 aa6.33□□□□□ -1.4
USP40-203ENST00000427112 RBMY1BA6NDE4 496 aaKnown RBP6.33□□□□□ -1.4
USP40-203ENST00000427112 RBMY1EA6NEQ0 496 aaKnown RBP6.33□□□□□ -1.4
USP40-203ENST00000427112 LINC01546A6NGU7 62 aa6.33□□□□□ -1.4
USP40-203ENST00000427112 RBMY1DP0C7P1 496 aaKnown RBP6.33□□□□□ -1.4
USP40-203ENST00000427112 POM121L12Q8N7R1 296 aa6.33□□□□□ -1.4
USP40-203ENST00000427112 IGHV3-33P01772 117 aa6.33□□□□□ -1.4
USP40-203ENST00000427112 ESM1Q9NQ30 184 aa6.33□□□□□ -1.4
USP40-203ENST00000427112 LOC100131303A0A0U1RQF7 123 aa6.32□□□□□ -1.4
USP40-203ENST00000427112 COX6A2Q02221 97 aa6.32□□□□□ -1.4
USP40-203ENST00000427112 B4DSR2 109 aa6.32□□□□□ -1.4
USP40-203ENST00000427112 UCNP55089 124 aa6.32□□□□□ -1.4
USP40-203ENST00000427112 TMEM223A0PJW6 202 aa6.32□□□□□ -1.4
USP40-203ENST00000427112 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.32□□□□□ -1.4
USP40-203ENST00000427112 CSDC2Q9Y534 153 aaKnown RBP6.32□□□□□ -1.4
USP40-203ENST00000427112 PIK3CD-AS1Q5SR53 167 aa6.31□□□□□ -1.4
USP40-203ENST00000427112 TMEM141Q96I45 108 aa6.31□□□□□ -1.4
USP40-203ENST00000427112 AMELXQ99217 191 aa6.31□□□□□ -1.4
USP40-203ENST00000427112 K7EQG2 157 aa6.31□□□□□ -1.4
USP40-203ENST00000427112 PSMB8P28062 276 aa6.31□□□□□ -1.4
USP40-203ENST00000427112 C19orf54Q5BKX5 351 aa6.31□□□□□ -1.4
USP40-203ENST00000427112 Q9H8V8 135 aa6.31□□□□□ -1.4
USP40-203ENST00000427112 LENEPQ9Y5L5 61 aa6.31□□□□□ -1.4
USP40-203ENST00000427112 TRBV27A0A0K0K1C4 114 aa6.3□□□□□ -1.4
USP40-203ENST00000427112 IGLV1-40P01703 118 aa6.3□□□□□ -1.4
USP40-203ENST00000427112 NXPH4O95158 308 aa6.3□□□□□ -1.4
USP40-203ENST00000427112 LINC01620Q4KN68 170 aa6.3□□□□□ -1.4
USP40-203ENST00000427112 MPLKIPQ8TAP9 179 aa6.3□□□□□ -1.4
USP40-203ENST00000427112 Q9HAA7 133 aa6.3□□□□□ -1.4
USP40-203ENST00000427112 UBE2D3P61077 147 aa6.3□□□□□ -1.4
USP40-203ENST00000427112 UBE2D2P62837 147 aa6.3□□□□□ -1.4
USP40-203ENST00000427112 Q6ZTI0 123 aa6.29□□□□□ -1.4
USP40-203ENST00000427112 TMEM263Q8WUH6 116 aaKnown RBP6.29□□□□□ -1.4
USP40-203ENST00000427112 LEPROTO15243 131 aa6.29□□□□□ -1.4
USP40-203ENST00000427112 FAM19A4Q96LR4 140 aa6.29□□□□□ -1.4
USP40-203ENST00000427112 LGALS9O00182 355 aa6.29□□□□□ -1.4
USP40-203ENST00000427112 PFN2P35080 140 aa6.29□□□□□ -1.4
USP40-203ENST00000427112 C9orf85Q96MD7 179 aa6.29□□□□□ -1.4
USP40-203ENST00000427112 TIMM17AQ99595 171 aa6.29□□□□□ -1.4
USP40-203ENST00000427112 NOP10Q9NPE3 64 aaKnown RBP6.29□□□□□ -1.4
USP40-203ENST00000427112 NBEAL1Q6ZS30 2694 aa6.29□□□□□ -1.4
USP40-203ENST00000427112 DEFB4AO15263 64 aa6.28□□□□□ -1.4
USP40-203ENST00000427112 RHOHQ15669 191 aa6.28□□□□□ -1.4
USP40-203ENST00000427112 PAPPA-AS1Q5QFB9 102 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms