RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 SMIM6P0DI80 62 aa12.33□□□□□ -0.44
SMARCB1-204ENST00000407422 ESDP10768 282 aa12.33□□□□□ -0.44
SMARCB1-204ENST00000407422 TMEM241Q24JQ0 296 aa12.33□□□□□ -0.44
SMARCB1-204ENST00000407422 SMKR1H3BMG3 65 aa12.32□□□□□ -0.44
SMARCB1-204ENST00000407422 POLR2KP53803 58 aaKnown RBP12.32□□□□□ -0.44
SMARCB1-204ENST00000407422 RPL37AP61513 92 aaKnown RBP12.32□□□□□ -0.44
SMARCB1-204ENST00000407422 RPL23P62829 140 aaKnown RBP12.32□□□□□ -0.44
SMARCB1-204ENST00000407422 SRSF3P84103 164 aaKnown RBP12.32□□□□□ -0.44
SMARCB1-204ENST00000407422 IGHV3-64A0A075B6Q5 118 aa12.31□□□□□ -0.44
SMARCB1-204ENST00000407422 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.31□□□□□ -0.44
SMARCB1-204ENST00000407422 LINC00587B1AMM8 73 aa12.31□□□□□ -0.44
SMARCB1-204ENST00000407422 CHTF8P0CG12 524 aa12.31□□□□□ -0.44
SMARCB1-204ENST00000407422 AKR1D1P51857 326 aa12.31□□□□□ -0.44
SMARCB1-204ENST00000407422 HIGD2BQ4VC39 106 aa12.31□□□□□ -0.44
SMARCB1-204ENST00000407422 MRAP2Q96G30 205 aa12.31□□□□□ -0.44
SMARCB1-204ENST00000407422 S100A8P05109 93 aa12.3□□□□□ -0.44
SMARCB1-204ENST00000407422 ZNF25P17030 456 aaPredicted RBP12.3□□□□□ -0.44
SMARCB1-204ENST00000407422 RIGQ13278 110 aa12.3□□□□□ -0.44
SMARCB1-204ENST00000407422 CIRBPQ14011 172 aaKnown RBP12.3□□□□□ -0.44
SMARCB1-204ENST00000407422 FAM74A3Q4VXF1 159 aa12.3□□□□□ -0.44
SMARCB1-204ENST00000407422 TRBV27A0A0K0K1C4 114 aa12.29□□□□□ -0.44
SMARCB1-204ENST00000407422 ADIRFQ15847 76 aa12.29□□□□□ -0.44
SMARCB1-204ENST00000407422 CFAP161Q6P656 301 aa12.29□□□□□ -0.44
SMARCB1-204ENST00000407422 OR5A1Q8NGJ0 315 aa12.29□□□□□ -0.44
SMARCB1-204ENST00000407422 FOXI1Q12951 378 aa12.29□□□□□ -0.44
SMARCB1-204ENST00000407422 TMEM101Q96IK0 257 aa12.29□□□□□ -0.44
SMARCB1-204ENST00000407422 BTF3L4Q96K17 158 aa12.29□□□□□ -0.44
SMARCB1-204ENST00000407422 XCL1P47992 114 aa12.28□□□□□ -0.44
SMARCB1-204ENST00000407422 HNRNPA3P51991 378 aaKnown RBP12.28□□□□□ -0.44
SMARCB1-204ENST00000407422 NAT8BQ9UHF3 227 aa12.28□□□□□ -0.44
SMARCB1-204ENST00000407422 LINC00959A0A1B0GUT2 108 aa12.27□□□□□ -0.44
SMARCB1-204ENST00000407422 NRACQ8N912 160 aa12.27□□□□□ -0.44
SMARCB1-204ENST00000407422 DPH3Q96FX2 82 aa12.27□□□□□ -0.44
SMARCB1-204ENST00000407422 NAT8Q9UHE5 227 aa12.27□□□□□ -0.44
SMARCB1-204ENST00000407422 S100PP25815 95 aa12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 SPACA4Q8TDM5 124 aa12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 A0A087WYN8 130 aa12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 GVQW2A0A096LPI5 108 aaPredicted RBP12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 SMIM27A0A1W2PRY6 76 aa12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 CCL25O15444 150 aa12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 COX6A2Q02221 97 aa12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 MRPL52Q86TS9 123 aaKnown RBP12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 CDC42SE2Q9NRR3 84 aa12.26□□□□□ -0.45
SMARCB1-204ENST00000407422 C7orf77A4D0Y5 90 aa12.25□□□□□ -0.45
SMARCB1-204ENST00000407422 VCYO14598 125 aa12.25□□□□□ -0.45
SMARCB1-204ENST00000407422 PEA15Q15121 130 aa12.25□□□□□ -0.45
SMARCB1-204ENST00000407422 CAMPP49913 170 aa12.24□□□□□ -0.45
SMARCB1-204ENST00000407422 SUMO2P61956 95 aaKnown RBP12.24□□□□□ -0.45
SMARCB1-204ENST00000407422 MRPL51Q4U2R6 128 aaKnown RBP12.24□□□□□ -0.45
SMARCB1-204ENST00000407422 FAM104BQ5XKR9 115 aa12.24□□□□□ -0.45
SMARCB1-204ENST00000407422 FCER1GP30273 86 aa12.23□□□□□ -0.45
SMARCB1-204ENST00000407422 ZNF664Q8N3J9 261 aa12.23□□□□□ -0.45
SMARCB1-204ENST00000407422 PRSS3P2Q8NHM4 247 aa12.23□□□□□ -0.45
SMARCB1-204ENST00000407422 LINC00526Q96FQ7 95 aa12.22□□□□□ -0.45
SMARCB1-204ENST00000407422 PPP1R17O96001 155 aa12.22□□□□□ -0.45
SMARCB1-204ENST00000407422 OXTP01178 125 aa12.22□□□□□ -0.45
SMARCB1-204ENST00000407422 APOC3P02656 99 aa12.22□□□□□ -0.45
SMARCB1-204ENST00000407422 UQCC3Q6UW78 93 aa12.22□□□□□ -0.45
SMARCB1-204ENST00000407422 SS18Q15532 418 aa12.21□□□□□ -0.46
SMARCB1-204ENST00000407422 SMDT1Q9H4I9 107 aa12.21□□□□□ -0.46
SMARCB1-204ENST00000407422 IGKV2-24A0A0C4DH68 120 aa12.2□□□□□ -0.46
SMARCB1-204ENST00000407422 KIR2DL4Q99706 377 aa12.2□□□□□ -0.46
SMARCB1-204ENST00000407422 PLAC8Q9NZF1 115 aa12.2□□□□□ -0.46
SMARCB1-204ENST00000407422 UBE2D4Q9Y2X8 147 aa12.2□□□□□ -0.46
SMARCB1-204ENST00000407422 IGHV1-58A0A0C4DH39 117 aa12.19□□□□□ -0.46
SMARCB1-204ENST00000407422 RNASE13Q5GAN3 156 aaKnown RBP12.19□□□□□ -0.46
SMARCB1-204ENST00000407422 CD164L2Q6UWJ8 174 aa12.19□□□□□ -0.46
SMARCB1-204ENST00000407422 MAJINQ3KP22 176 aa12.19□□□□□ -0.46
SMARCB1-204ENST00000407422 MRPL54Q6P161 138 aaKnown RBP12.19□□□□□ -0.46
SMARCB1-204ENST00000407422 PPP1R2P9O14990 202 aa12.18□□□□□ -0.46
SMARCB1-204ENST00000407422 CKS2P33552 79 aa12.18□□□□□ -0.46
SMARCB1-204ENST00000407422 A0A1B0GW15 77 aa12.17□□□□□ -0.46
SMARCB1-204ENST00000407422 SVBPQ8N300 66 aa12.17□□□□□ -0.46
SMARCB1-204ENST00000407422 CSDC2Q9Y534 153 aaKnown RBP12.17□□□□□ -0.46
SMARCB1-204ENST00000407422 HMCN2Q8NDA2 5059 aa12.16□□□□□ -0.46
SMARCB1-204ENST00000407422 TRBV24-1A0A075B6N3 115 aa12.16□□□□□ -0.46
SMARCB1-204ENST00000407422 A0A096LNI7 61 aa12.16□□□□□ -0.46
SMARCB1-204ENST00000407422 C20orf78Q9BR46 151 aa12.16□□□□□ -0.46
SMARCB1-204ENST00000407422 A0A1B0GXF2 115 aa12.15□□□□□ -0.46
SMARCB1-204ENST00000407422 TNFRSF6BO95407 300 aa12.15□□□□□ -0.46
SMARCB1-204ENST00000407422 Q6ZUT4 128 aa12.15□□□□□ -0.46
SMARCB1-204ENST00000407422 TRAV13-1A0A0B4J241 112 aa12.15□□□□□ -0.47
SMARCB1-204ENST00000407422 C1orf196B1AJZ1 125 aa12.15□□□□□ -0.47
SMARCB1-204ENST00000407422 D6R8Y8 96 aa12.15□□□□□ -0.47
SMARCB1-204ENST00000407422 PHOX2AO14813 284 aa12.15□□□□□ -0.47
SMARCB1-204ENST00000407422 HBBP68871 147 aa12.15□□□□□ -0.47
SMARCB1-204ENST00000407422 STPG4Q8N801 248 aa12.15□□□□□ -0.47
SMARCB1-204ENST00000407422 ZNF561-AS1K7EIQ3 104 aa12.14□□□□□ -0.47
SMARCB1-204ENST00000407422 CARD19Q96LW7 228 aa12.14□□□□□ -0.47
SMARCB1-204ENST00000407422 RAB5BP61020 215 aa12.13□□□□□ -0.47
SMARCB1-204ENST00000407422 RPL39P62891 51 aaKnown RBP12.13□□□□□ -0.47
SMARCB1-204ENST00000407422 RPL32P62910 135 aaKnown RBP12.13□□□□□ -0.47
SMARCB1-204ENST00000407422 SMAGPQ0VAQ4 97 aa12.13□□□□□ -0.47
SMARCB1-204ENST00000407422 C10orf91Q5T1B1 145 aa12.13□□□□□ -0.47
SMARCB1-204ENST00000407422 NPYP01303 97 aa12.12□□□□□ -0.47
SMARCB1-204ENST00000407422 SYCNQ0VAF6 134 aa12.12□□□□□ -0.47
SMARCB1-204ENST00000407422 TIMM21Q9BVV7 248 aa12.12□□□□□ -0.47
SMARCB1-204ENST00000407422 SMIM2Q9BVW6 85 aa12.12□□□□□ -0.47
SMARCB1-204ENST00000407422 CARHSP1Q9Y2V2 147 aaKnown RBP12.12□□□□□ -0.47
SMARCB1-204ENST00000407422 COX7A2LO14548 114 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms