RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 PGPEP1Q9NXJ5 209 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 SAMD5Q5TGI4 173 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 COX8CQ7Z4L0 72 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 TRAV12-1A0A0B4J245 112 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 EREGO14944 169 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 TACC2O95359 2948 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 A0A0J9YWU9 116 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 TRBV27A0A0K0K1C4 114 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 K7ERU9 68 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 MUC4Q99102 2169 aa6.6□□□□□ -1.35
LIG4-202ENST00000405925 ITPR2Q14571 2701 aa6.59□□□□□ -1.35
LIG4-202ENST00000405925 TRBV6-5A0A0K0K1A5 114 aa6.59□□□□□ -1.35
LIG4-202ENST00000405925 G3V4G9 280 aa6.59□□□□□ -1.35
LIG4-202ENST00000405925 KRTAP1-1Q07627 177 aa6.59□□□□□ -1.35
LIG4-202ENST00000405925 TRBV6-8A0A0A6YYG3 113 aa6.59□□□□□ -1.35
LIG4-202ENST00000405925 LINC00269Q8N2A0 174 aa6.59□□□□□ -1.35
LIG4-202ENST00000405925 CAMK2N2Q96S95 79 aa6.59□□□□□ -1.35
LIG4-202ENST00000405925 U3KQK5 164 aa6.59□□□□□ -1.35
LIG4-202ENST00000405925 NANOS2P60321 138 aaKnown RBP6.59□□□□□ -1.36
LIG4-202ENST00000405925 KPRPQ5T749 579 aaPredicted RBP6.59□□□□□ -1.36
LIG4-202ENST00000405925 TRAV8-3A0A0A6YYJ7 113 aa6.58□□□□□ -1.36
LIG4-202ENST00000405925 BEAN1Q3B7T3 259 aa6.58□□□□□ -1.36
LIG4-202ENST00000405925 IL17DQ8TAD2 202 aa6.58□□□□□ -1.36
LIG4-202ENST00000405925 EDA2RQ9HAV5 297 aa6.58□□□□□ -1.36
LIG4-202ENST00000405925 TRAV10A0A0B4J240 114 aa6.58□□□□□ -1.36
LIG4-202ENST00000405925 KLK9Q2XQG4 91 aa6.58□□□□□ -1.36
LIG4-202ENST00000405925 RNASE8Q8TDE3 154 aaKnown RBP6.58□□□□□ -1.36
LIG4-202ENST00000405925 POLR2KP53803 58 aaKnown RBP6.58□□□□□ -1.36
LIG4-202ENST00000405925 IGLV4-3A0A075B6K6 122 aa6.57□□□□□ -1.36
LIG4-202ENST00000405925 LURAP1LQ8IV03 231 aa6.57□□□□□ -1.36
LIG4-202ENST00000405925 CITED1Q99966 193 aa6.57□□□□□ -1.36
LIG4-202ENST00000405925 SNHG12Q9BXW3 62 aa6.57□□□□□ -1.36
LIG4-202ENST00000405925 USP34Q70CQ2 3546 aa6.57□□□□□ -1.36
LIG4-202ENST00000405925 SPAG11BQ08648 103 aa6.57□□□□□ -1.36
LIG4-202ENST00000405925 PIK3CD-AS1Q5SR53 167 aa6.57□□□□□ -1.36
LIG4-202ENST00000405925 NKAPP1Q8N9T2 125 aa6.57□□□□□ -1.36
LIG4-202ENST00000405925 REG3AQ06141 175 aa6.56□□□□□ -1.36
LIG4-202ENST00000405925 TSHBP01222 138 aa6.56□□□□□ -1.36
LIG4-202ENST00000405925 BOD1L2Q8IYS8 172 aa6.56□□□□□ -1.36
LIG4-202ENST00000405925 SCRT2Q9NQ03 307 aa6.56□□□□□ -1.36
LIG4-202ENST00000405925 E9PLD3 99 aa6.56□□□□□ -1.36
LIG4-202ENST00000405925 SPATA12Q7Z6I5 190 aa6.56□□□□□ -1.36
LIG4-202ENST00000405925 COX7B2Q8TF08 81 aa6.56□□□□□ -1.36
LIG4-202ENST00000405925 UBR5O95071 2799 aaPredicted RBP6.56□□□□□ -1.36
LIG4-202ENST00000405925 RBX1P62877 108 aa6.55□□□□□ -1.36
LIG4-202ENST00000405925 RBMY1FQ15415 496 aaKnown RBP6.55□□□□□ -1.36
LIG4-202ENST00000405925 CDKN2A-AS1Q9UH64 79 aa6.55□□□□□ -1.36
LIG4-202ENST00000405925 BVES-AS1Q5T3Y7 98 aa6.55□□□□□ -1.36
LIG4-202ENST00000405925 GAGE12HA6NDE8 117 aa6.55□□□□□ -1.36
LIG4-202ENST00000405925 DAND5Q8N907 189 aa6.55□□□□□ -1.36
LIG4-202ENST00000405925 RNF183Q96D59 192 aa6.55□□□□□ -1.36
LIG4-202ENST00000405925 CLUHP3Q96NS8 147 aa6.55□□□□□ -1.36
LIG4-202ENST00000405925 HERV-K104P63124 156 aa6.55□□□□□ -1.36
LIG4-202ENST00000405925 CFAP47Q6ZTR5 3102 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 K7ERJ3 54 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 GAGE2EQ4V326 116 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 Q6ZTC4 211 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 TM2D2Q9BX73 214 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 GAGE2DQ9UEU5 116 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 IGHV1-58A0A0C4DH39 117 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 CEND1Q8N111 149 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 UBE2D3P61077 147 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 UBE2D2P62837 147 aa6.54□□□□□ -1.36
LIG4-202ENST00000405925 RPL32P62910 135 aaKnown RBP6.54□□□□□ -1.36
LIG4-202ENST00000405925 NOTCH1P46531 2555 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 A0A1B0GV72 72 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 SIVA1O15304 175 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 RPL18AQ02543 176 aaKnown RBP6.53□□□□□ -1.36
LIG4-202ENST00000405925 CHCHD10Q8WYQ3 142 aaPredicted RBP6.53□□□□□ -1.36
LIG4-202ENST00000405925 NDUFA1O15239 70 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 GHRHP01286 108 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 CRYBA4P53673 196 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 ATXN8Q156A1 80 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 TAL2Q16559 108 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 HIGD2BQ4VC39 106 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 ZFAND6Q6FIF0 208 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 PRSS47A8MTI9 375 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 PRO1854Q9UHT4 67 aa6.53□□□□□ -1.36
LIG4-202ENST00000405925 ITPR1Q14643 2758 aa6.52□□□□□ -1.37
LIG4-202ENST00000405925 C10orf126Q8N4M7 172 aa6.52□□□□□ -1.37
LIG4-202ENST00000405925 MRPL52Q86TS9 123 aaKnown RBP6.52□□□□□ -1.37
LIG4-202ENST00000405925 IGLV2-18A0A075B6J9 118 aa6.52□□□□□ -1.37
LIG4-202ENST00000405925 TINCRA0A1B0GVN0 87 aa6.52□□□□□ -1.37
LIG4-202ENST00000405925 ZNF22P17026 224 aaPredicted RBP6.52□□□□□ -1.37
LIG4-202ENST00000405925 LINC00310P59036 64 aa6.52□□□□□ -1.37
LIG4-202ENST00000405925 C15orf53Q8NAA6 179 aa6.52□□□□□ -1.37
LIG4-202ENST00000405925 CBY1Q9Y3M2 126 aa6.52□□□□□ -1.37
LIG4-202ENST00000405925 H7C423 109 aa6.51□□□□□ -1.37
LIG4-202ENST00000405925 LELP1Q5T871 98 aa6.51□□□□□ -1.37
LIG4-202ENST00000405925 LRBAP50851 2863 aa6.51□□□□□ -1.37
LIG4-202ENST00000405925 FHL2Q14192 279 aa6.51□□□□□ -1.37
LIG4-202ENST00000405925 PYGO1Q9Y3Y4 419 aa6.51□□□□□ -1.37
LIG4-202ENST00000405925 Q6ZSN1 163 aa6.51□□□□□ -1.37
LIG4-202ENST00000405925 URB1-AS1Q96HZ7 61 aa6.51□□□□□ -1.37
LIG4-202ENST00000405925 SND1-IT1Q9HBX3 110 aa6.51□□□□□ -1.37
LIG4-202ENST00000405925 A4D1N5 150 aa6.5□□□□□ -1.37
LIG4-202ENST00000405925 C11orf72Q8NBR9 251 aa6.5□□□□□ -1.37
LIG4-202ENST00000405925 FAM19A4Q96LR4 140 aa6.5□□□□□ -1.37
LIG4-202ENST00000405925 COX11Q9Y6N1 276 aa6.5□□□□□ -1.37
LIG4-202ENST00000405925 C12orf74Q32Q52 190 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms