RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 TMEM18Q96B42 140 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 TMEM141Q96I45 108 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 TENM2Q9NT68 2774 aa4.67□□□□□ -1.66
LIMA1-202ENST00000394943 EPM2AB3EWF7 344 aa4.66□□□□□ -1.66
LIMA1-202ENST00000394943 AMTP48728 403 aa4.66□□□□□ -1.66
LIMA1-202ENST00000394943 MPV17L2Q567V2 206 aa4.66□□□□□ -1.66
LIMA1-202ENST00000394943 RAB5BP61020 215 aa4.66□□□□□ -1.66
LIMA1-202ENST00000394943 URGCP-MRPS24S4R325 110 aa4.66□□□□□ -1.66
LIMA1-202ENST00000394943 ZNF664Q8N3J9 261 aa4.66□□□□□ -1.66
LIMA1-202ENST00000394943 IGLV4-60A0A075B6I1 120 aa4.65□□□□□ -1.66
LIMA1-202ENST00000394943 FGF6P10767 208 aa4.65□□□□□ -1.66
LIMA1-202ENST00000394943 IFI27P40305 119 aaPredicted RBP4.65□□□□□ -1.66
LIMA1-202ENST00000394943 FABP9Q0Z7S8 132 aa4.65□□□□□ -1.66
LIMA1-202ENST00000394943 IGLV4-3A0A075B6K6 122 aa4.65□□□□□ -1.67
LIMA1-202ENST00000394943 LY6G6CO95867 125 aa4.65□□□□□ -1.67
LIMA1-202ENST00000394943 LINC00614P0C842 121 aa4.65□□□□□ -1.67
LIMA1-202ENST00000394943 TRAV12-1A0A0B4J245 112 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 FOXI1Q12951 378 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 CDPF1Q6NVV7 123 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 ERASQ7Z444 233 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 UBE2DNLQ8IWF7 75 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 NTN5Q8WTR8 489 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-202ENST00000394943 APOBP04114 4563 aaKnown RBP4.64□□□□□ -1.67
LIMA1-202ENST00000394943 TRGC2P03986 189 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 RMI2Q96E14 147 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 UBE2D1P51668 147 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 C1orf134Q5TEV5 83 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 TM2D2Q9BX73 214 aa4.64□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BKO60814 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BJP06899 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BOP23527 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BBP33778 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BDP58876 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BCP62807 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST2H2BEQ16778 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-202ENST00000394943 C2orf66Q6UXQ4 117 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 SPATA12Q7Z6I5 190 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 Q8N3U1 123 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BHQ93079 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BNQ99877 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 HIST1H2BMQ99879 126 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 CNBPP62633 177 aaKnown RBP4.63□□□□□ -1.67
LIMA1-202ENST00000394943 MAPKAPK5-AS1Q8N8E1 139 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 CYSLTR1Q9Y271 337 aa4.63□□□□□ -1.67
LIMA1-202ENST00000394943 LINC00959A0A1B0GUT2 108 aa4.62□□□□□ -1.67
LIMA1-202ENST00000394943 GVQW2A0A096LPI5 108 aaPredicted RBP4.62□□□□□ -1.67
LIMA1-202ENST00000394943 IGLC3P0DOY3 106 aa4.62□□□□□ -1.67
LIMA1-202ENST00000394943 REG3AQ06141 175 aa4.62□□□□□ -1.67
LIMA1-202ENST00000394943 RNF151Q2KHN1 245 aa4.62□□□□□ -1.67
LIMA1-202ENST00000394943 KIAA1644Q3SXP7 199 aa4.62□□□□□ -1.67
LIMA1-202ENST00000394943 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-202ENST00000394943 IGHV3OR16-9A0A0B4J2B5 98 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 IGKV2-29A2NJV5 120 aaPredicted RBP4.61□□□□□ -1.67
LIMA1-202ENST00000394943 CD164L2Q6UWJ8 174 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 BIRC6Q9NR09 4857 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 LRP1BQ9NZR2 4599 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 A0A087WTM6 91 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 TINCRA0A1B0GVN0 87 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 HBDP02042 147 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 AP5S1Q9NUS5 200 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 GAGE6Q13070 117 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 CIRBPQ14011 172 aaKnown RBP4.61□□□□□ -1.67
LIMA1-202ENST00000394943 PAPPA-AS1Q5QFB9 102 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 Q6ZUT4 128 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 TMEM101Q96IK0 257 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 CHCHD5Q9BSY4 110 aa4.61□□□□□ -1.67
LIMA1-202ENST00000394943 RPL39P62891 51 aaKnown RBP4.6□□□□□ -1.67
LIMA1-202ENST00000394943 Q6ZSA8 131 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 Q8N814 137 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 UBE2L6O14933 153 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 C15orf56Q8N910 161 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 BAALCQ8WXS3 180 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 PKHD1P08F94 4074 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 IGLV4-69A0A075B6H9 119 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 A0A087WZ39 114 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 LINC00269Q8N2A0 174 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 OR10D4PQ8NGN7 298 aa4.6□□□□□ -1.67
LIMA1-202ENST00000394943 EPPK1P58107 5090 aaKnown RBP4.6□□□□□ -1.67
LIMA1-202ENST00000394943 ATP5LO75964 103 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 LINC00242Q5T6M2 205 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 Q8N976 141 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 PRSS3P2Q8NHM4 247 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 CST9LQ9H4G1 147 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 A0A087WX48 190 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 C14orf177Q52M58 125 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 DGAT2L7PQ6IED9 249 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 C2orf48Q96LS8 159 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 PGPEP1Q9NXJ5 209 aa4.59□□□□□ -1.67
LIMA1-202ENST00000394943 IGLV5-39A0A0G2JS06 123 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 IGHV3-30P01768 117 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 IGHV3-33P01772 117 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 IGHV3-30-3P0DP02 117 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 IGHV3-30-5P0DP03 117 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 S100A2P29034 98 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 SEC11AP67812 179 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 FA2HQ7L5A8 372 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 KLK12Q9UKR0 248 aa4.59□□□□□ -1.68
LIMA1-202ENST00000394943 C1orf196B1AJZ1 125 aa4.58□□□□□ -1.68
LIMA1-202ENST00000394943 NUPR1O60356 82 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms