RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 DEFB4AO15263 64 aa7.2□□□□□ -1.26
VPS53-202ENST00000389040 EMP1P54849 157 aa7.2□□□□□ -1.26
VPS53-202ENST00000389040 PRADC1Q9BSG0 188 aa7.2□□□□□ -1.26
VPS53-202ENST00000389040 Q9UF83 564 aa7.2□□□□□ -1.26
VPS53-202ENST00000389040 MYMXA0A1B0GTQ4 84 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 DAD1P61803 113 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 C12orf74Q32Q52 190 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 OR4C5Q8NGB2 326 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 OPRPNQ99935 248 aaPredicted RBP7.19□□□□□ -1.26
VPS53-202ENST00000389040 NOP10Q9NPE3 64 aaKnown RBP7.19□□□□□ -1.26
VPS53-202ENST00000389040 TRAV10A0A0B4J240 114 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 CIDEAO60543 219 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 HERVK_113P61574 105 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 ZNRF2Q8NHG8 242 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 KLK5Q9Y337 293 aaPredicted RBP7.19□□□□□ -1.26
VPS53-202ENST00000389040 PYGO1Q9Y3Y4 419 aa7.19□□□□□ -1.26
VPS53-202ENST00000389040 IGLV4-3A0A075B6K6 122 aa7.18□□□□□ -1.26
VPS53-202ENST00000389040 GCSHP23434 173 aa7.18□□□□□ -1.26
VPS53-202ENST00000389040 CEMP1Q6PRD7 247 aaPredicted RBP7.18□□□□□ -1.26
VPS53-202ENST00000389040 Q6ZTI0 123 aa7.18□□□□□ -1.26
VPS53-202ENST00000389040 H3BRM9 83 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 NANOS2P60321 138 aaKnown RBP7.17□□□□□ -1.26
VPS53-202ENST00000389040 UBE2V1Q13404 147 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 VAMP3Q15836 100 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 NFE4Q86UQ8 179 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 PHLDA1Q8WV24 401 aaPredicted RBP7.17□□□□□ -1.26
VPS53-202ENST00000389040 ZNF479Q96JC4 524 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 VCX2Q9H322 139 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 CELA1Q9UNI1 258 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 TRAV4A0A0B4J268 109 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 ATP5G1P05496 136 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 TAL2Q16559 108 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 TMEM170BQ5T4T1 132 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 CEND1Q8N111 149 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 CHCHD7Q9BUK0 85 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 TM2D2Q9BX73 214 aa7.17□□□□□ -1.26
VPS53-202ENST00000389040 ZNF815PA8K554 130 aa7.16□□□□□ -1.26
VPS53-202ENST00000389040 CCL25O15444 150 aa7.16□□□□□ -1.26
VPS53-202ENST00000389040 PTTG1IPP53801 180 aa7.16□□□□□ -1.26
VPS53-202ENST00000389040 FXYD2P54710 66 aa7.16□□□□□ -1.26
VPS53-202ENST00000389040 COTL1Q14019 142 aa7.16□□□□□ -1.26
VPS53-202ENST00000389040 CASC10Q5T4H9 136 aa7.16□□□□□ -1.26
VPS53-202ENST00000389040 Q6ZTC4 211 aa7.16□□□□□ -1.26
VPS53-202ENST00000389040 TRGV2A0A075B6R0 118 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 DEFB131BA0A096LNP1 70 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 IGHV3-38A0A0C4DH36 116 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 K7EQD1 137 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 DEFB130BP0DP73 79 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 DEFB130AP0DP74 79 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 CRYBA4P53673 196 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 FAM104AQ969W3 186 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 AMELXQ99217 191 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 SPANXA1Q9NS26 97 aa7.15□□□□□ -1.26
VPS53-202ENST00000389040 TRBV7-3A0A075B6L6 115 aa7.15□□□□□ -1.27
VPS53-202ENST00000389040 TRBV10-1A0A0K0K1A3 114 aa7.15□□□□□ -1.27
VPS53-202ENST00000389040 C9orf118A6NHY6 69 aa7.15□□□□□ -1.27
VPS53-202ENST00000389040 K7EP13 123 aa7.15□□□□□ -1.27
VPS53-202ENST00000389040 SVIPQ8NHG7 77 aa7.15□□□□□ -1.27
VPS53-202ENST00000389040 HIST1H4GQ99525 98 aa7.15□□□□□ -1.27
VPS53-202ENST00000389040 UBE2D4Q9Y2X8 147 aa7.15□□□□□ -1.27
VPS53-202ENST00000389040 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.14□□□□□ -1.27
VPS53-202ENST00000389040 GAGE12BA1L429 117 aa7.14□□□□□ -1.27
VPS53-202ENST00000389040 IGKV2-29A2NJV5 120 aaPredicted RBP7.14□□□□□ -1.27
VPS53-202ENST00000389040 H3BNG1 76 aa7.14□□□□□ -1.27
VPS53-202ENST00000389040 GAGE7O76087 117 aa7.14□□□□□ -1.27
VPS53-202ENST00000389040 GAGE12FP0CL80 117 aa7.14□□□□□ -1.27
VPS53-202ENST00000389040 GAGE12GP0CL81 117 aa7.14□□□□□ -1.27
VPS53-202ENST00000389040 GAGE12IP0CL82 117 aa7.14□□□□□ -1.27
VPS53-202ENST00000389040 SMIM13P0DJ93 91 aa7.14□□□□□ -1.27
VPS53-202ENST00000389040 AMMECR1LQ6DCA0 310 aa7.14□□□□□ -1.27
VPS53-202ENST00000389040 A0A0J9YXV3 536 aa7.13□□□□□ -1.27
VPS53-202ENST00000389040 TMEM223A0PJW6 202 aa7.13□□□□□ -1.27
VPS53-202ENST00000389040 ZNF22P17026 224 aaPredicted RBP7.13□□□□□ -1.27
VPS53-202ENST00000389040 TSPEAR-AS2P59090 65 aa7.13□□□□□ -1.27
VPS53-202ENST00000389040 RPL36AP83881 106 aaKnown RBP7.13□□□□□ -1.27
VPS53-202ENST00000389040 SCGB1D4Q6XE38 83 aa7.13□□□□□ -1.27
VPS53-202ENST00000389040 SLC25A29Q8N8R3 303 aa7.13□□□□□ -1.27
VPS53-202ENST00000389040 RPL36ALQ969Q0 106 aaKnown RBP7.13□□□□□ -1.27
VPS53-202ENST00000389040 RAB37Q96AX2 223 aa7.13□□□□□ -1.27
VPS53-202ENST00000389040 C15orf53Q8NAA6 179 aa7.13□□□□□ -1.27
VPS53-202ENST00000389040 PLEKHB2Q96CS7 222 aa7.13□□□□□ -1.27
VPS53-202ENST00000389040 H3BUT2 72 aa7.12□□□□□ -1.27
VPS53-202ENST00000389040 J3QQQ9 107 aa7.12□□□□□ -1.27
VPS53-202ENST00000389040 K7ERJ3 54 aa7.12□□□□□ -1.27
VPS53-202ENST00000389040 MRPS36P82909 103 aaKnown RBP7.12□□□□□ -1.27
VPS53-202ENST00000389040 RNASE13Q5GAN3 156 aaKnown RBP7.12□□□□□ -1.27
VPS53-202ENST00000389040 DAZ4Q86SG3 579 aaKnown RBP7.12□□□□□ -1.27
VPS53-202ENST00000389040 DAZ3Q9NR90 486 aaKnown RBP7.12□□□□□ -1.27
VPS53-202ENST00000389040 NHP2Q9NX24 153 aaKnown RBP7.12□□□□□ -1.27
VPS53-202ENST00000389040 LEPROTO15243 131 aa7.11□□□□□ -1.27
VPS53-202ENST00000389040 LGALS3P17931 250 aaKnown RBP7.11□□□□□ -1.27
VPS53-202ENST00000389040 UBE2D3P61077 147 aa7.11□□□□□ -1.27
VPS53-202ENST00000389040 UBE2D2P62837 147 aa7.11□□□□□ -1.27
VPS53-202ENST00000389040 Q6ZUT4 128 aa7.11□□□□□ -1.27
VPS53-202ENST00000389040 F5H768 121 aa7.11□□□□□ -1.27
VPS53-202ENST00000389040 ZFAND6Q6FIF0 208 aa7.11□□□□□ -1.27
VPS53-202ENST00000389040 NAA38Q9BRA0 125 aaKnown RBP7.11□□□□□ -1.27
VPS53-202ENST00000389040 TIMM21Q9BVV7 248 aa7.11□□□□□ -1.27
VPS53-202ENST00000389040 PRO0255Q9UI72 69 aa7.11□□□□□ -1.27
VPS53-202ENST00000389040 DNAH7Q8WXX0 4024 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms