RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 NBPF19A0A087WUL8 3843 aa11.8□□□□□ -0.52
NKX3-1-201ENST00000380871 H3BMM0 161 aa11.8□□□□□ -0.52
NKX3-1-201ENST00000380871 LRRC75A-AS1Q8N1F1 130 aa11.8□□□□□ -0.52
NKX3-1-201ENST00000380871 NDUFA12Q9UI09 145 aa11.8□□□□□ -0.52
NKX3-1-201ENST00000380871 TEX49A0A1B0GTD5 131 aa11.79□□□□□ -0.52
NKX3-1-201ENST00000380871 LINC00467Q9BRT7 94 aa11.79□□□□□ -0.52
NKX3-1-201ENST00000380871 CHCHD7Q9BUK0 85 aa11.79□□□□□ -0.52
NKX3-1-201ENST00000380871 SMR3AQ99954 134 aa11.78□□□□□ -0.52
NKX3-1-201ENST00000380871 LINC01620Q4KN68 170 aa11.78□□□□□ -0.52
NKX3-1-201ENST00000380871 CITED2Q99967 270 aaPredicted RBP11.78□□□□□ -0.52
NKX3-1-201ENST00000380871 MAP6D1Q9H9H5 199 aa11.78□□□□□ -0.52
NKX3-1-201ENST00000380871 IGHV1-58A0A0C4DH39 117 aa11.77□□□□□ -0.52
NKX3-1-201ENST00000380871 C4orf3Q8WVX3 66 aa11.77□□□□□ -0.52
NKX3-1-201ENST00000380871 UBE2D4Q9Y2X8 147 aa11.77□□□□□ -0.52
NKX3-1-201ENST00000380871 PYGO1Q9Y3Y4 419 aa11.77□□□□□ -0.52
NKX3-1-201ENST00000380871 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.77□□□□□ -0.53
NKX3-1-201ENST00000380871 DEFB114Q30KQ6 69 aa11.77□□□□□ -0.53
NKX3-1-201ENST00000380871 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.76□□□□□ -0.53
NKX3-1-201ENST00000380871 CLEC2BQ92478 149 aa11.76□□□□□ -0.53
NKX3-1-201ENST00000380871 VSIG2Q96IQ7 327 aa11.76□□□□□ -0.53
NKX3-1-201ENST00000380871 ATXN8Q156A1 80 aa11.76□□□□□ -0.53
NKX3-1-201ENST00000380871 CRLF1O75462 422 aa11.75□□□□□ -0.53
NKX3-1-201ENST00000380871 RNF183Q96D59 192 aa11.75□□□□□ -0.53
NKX3-1-201ENST00000380871 CCL24O00175 119 aa11.75□□□□□ -0.53
NKX3-1-201ENST00000380871 IGHV3-53P01767 116 aa11.74□□□□□ -0.53
NKX3-1-201ENST00000380871 RNF152Q8N8N0 203 aa11.74□□□□□ -0.53
NKX3-1-201ENST00000380871 CDKN2A-AS1Q9UH64 79 aa11.74□□□□□ -0.53
NKX3-1-201ENST00000380871 WFDC10AQ9H1F0 79 aa11.74□□□□□ -0.53
NKX3-1-201ENST00000380871 ICOSQ9Y6W8 199 aa11.74□□□□□ -0.53
NKX3-1-201ENST00000380871 A0A0U1RRA0 63 aa11.73□□□□□ -0.53
NKX3-1-201ENST00000380871 TRBV30A0A0K0K1B3 111 aa11.73□□□□□ -0.53
NKX3-1-201ENST00000380871 NDUFA7O95182 113 aa11.73□□□□□ -0.53
NKX3-1-201ENST00000380871 MIAQ16674 131 aa11.73□□□□□ -0.53
NKX3-1-201ENST00000380871 TINCRA0A1B0GVN0 87 aa11.72□□□□□ -0.53
NKX3-1-201ENST00000380871 STHQ8IWL8 128 aa11.72□□□□□ -0.53
NKX3-1-201ENST00000380871 Q8N2B8 174 aa11.72□□□□□ -0.53
NKX3-1-201ENST00000380871 ZNF625Q96I27 306 aaPredicted RBP11.72□□□□□ -0.53
NKX3-1-201ENST00000380871 UNC79Q9P2D8 2635 aa11.72□□□□□ -0.53
NKX3-1-201ENST00000380871 TRAV4A0A0B4J268 109 aa11.72□□□□□ -0.53
NKX3-1-201ENST00000380871 J3QKU1 62 aa11.71□□□□□ -0.53
NKX3-1-201ENST00000380871 COX6A2Q02221 97 aa11.71□□□□□ -0.53
NKX3-1-201ENST00000380871 C11orf72Q8NBR9 251 aa11.71□□□□□ -0.53
NKX3-1-201ENST00000380871 EDA2RQ9HAV5 297 aa11.71□□□□□ -0.53
NKX3-1-201ENST00000380871 ZNF415Q09FC8 603 aa11.71□□□□□ -0.53
NKX3-1-201ENST00000380871 H7C423 109 aa11.71□□□□□ -0.54
NKX3-1-201ENST00000380871 RPL35AP18077 110 aaKnown RBP11.71□□□□□ -0.54
NKX3-1-201ENST00000380871 SPANXDQ9BXN6 97 aa11.71□□□□□ -0.54
NKX3-1-201ENST00000380871 SPANXCQ9NY87 97 aa11.71□□□□□ -0.54
NKX3-1-201ENST00000380871 ODF3L2Q3SX64 289 aa11.7□□□□□ -0.54
NKX3-1-201ENST00000380871 CITED1Q99966 193 aa11.7□□□□□ -0.54
NKX3-1-201ENST00000380871 TRBV10-2A0A0K0K1G8 114 aa11.7□□□□□ -0.54
NKX3-1-201ENST00000380871 SPANXA1Q9NS26 97 aa11.7□□□□□ -0.54
NKX3-1-201ENST00000380871 TMEM262E9PQX1 116 aa11.7□□□□□ -0.54
NKX3-1-201ENST00000380871 RPL13AP40429 203 aaKnown RBP11.69□□□□□ -0.54
NKX3-1-201ENST00000380871 ZFAND6Q6FIF0 208 aa11.69□□□□□ -0.54
NKX3-1-201ENST00000380871 C2orf82Q6UX34 121 aa11.69□□□□□ -0.54
NKX3-1-201ENST00000380871 LINC01006Q8NI28 216 aa11.69□□□□□ -0.54
NKX3-1-201ENST00000380871 ANAPC13Q9BS18 74 aa11.69□□□□□ -0.54
NKX3-1-201ENST00000380871 TRGV1A0A0A0MS02 117 aa11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 LINC00694P0DN24 101 aa11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 TMEM101Q96IK0 257 aa11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 SETXQ7Z333 2677 aaKnown RBP11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 M0QXV9 152 aa11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 PLA2G2AP14555 144 aa11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 TEX29Q8N6K0 151 aa11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 INSP01308 110 aa11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 UBE2WQ96B02 151 aa11.68□□□□□ -0.54
NKX3-1-201ENST00000380871 A8MTW9 85 aa11.67□□□□□ -0.54
NKX3-1-201ENST00000380871 DGAT2L7PQ6IED9 249 aa11.66□□□□□ -0.54
NKX3-1-201ENST00000380871 TRAV8-4A0A0B4J246 113 aa11.65□□□□□ -0.54
NKX3-1-201ENST00000380871 SNCGO76070 127 aa11.65□□□□□ -0.54
NKX3-1-201ENST00000380871 Q9H8V8 135 aa11.65□□□□□ -0.54
NKX3-1-201ENST00000380871 PDZD2O15018 2839 aa11.65□□□□□ -0.54
NKX3-1-201ENST00000380871 NHLRC4P0CG21 123 aaPredicted RBP11.65□□□□□ -0.54
NKX3-1-201ENST00000380871 KRTAP1-1Q07627 177 aa11.65□□□□□ -0.54
NKX3-1-201ENST00000380871 TRAV13-1A0A0B4J241 112 aa11.64□□□□□ -0.55
NKX3-1-201ENST00000380871 TTC32Q5I0X7 151 aa11.64□□□□□ -0.55
NKX3-1-201ENST00000380871 LINC00242Q5T6M2 205 aa11.63□□□□□ -0.55
NKX3-1-201ENST00000380871 GAGE2BQ13066 116 aa11.63□□□□□ -0.55
NKX3-1-201ENST00000380871 GAGE2EQ4V326 116 aa11.63□□□□□ -0.55
NKX3-1-201ENST00000380871 TMEM86BQ8N661 226 aa11.63□□□□□ -0.55
NKX3-1-201ENST00000380871 GAGE2DQ9UEU5 116 aa11.63□□□□□ -0.55
NKX3-1-201ENST00000380871 LST1O00453 97 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 NDUFA1O15239 70 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 COX6CP09669 75 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 C15orf53Q8NAA6 179 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 SOSTDC1Q6X4U4 206 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 C1orf158Q8N1D5 194 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 RS1O15537 224 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 BEAN1Q3B7T3 259 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 Q6ZTI0 123 aa11.62□□□□□ -0.55
NKX3-1-201ENST00000380871 LINC00308Q8TCZ7 52 aa11.61□□□□□ -0.55
NKX3-1-201ENST00000380871 NOP10Q9NPE3 64 aaKnown RBP11.61□□□□□ -0.55
NKX3-1-201ENST00000380871 GCN1Q92616 2671 aaKnown RBP11.61□□□□□ -0.55
NKX3-1-201ENST00000380871 IGLV5-45A0A087WSX0 123 aa11.61□□□□□ -0.55
NKX3-1-201ENST00000380871 NTM-AS1Q6ZSK4 140 aa11.61□□□□□ -0.55
NKX3-1-201ENST00000380871 NDUFV3P56181 108 aaKnown RBP11.59□□□□□ -0.55
NKX3-1-201ENST00000380871 TIRAPP58753 221 aa11.59□□□□□ -0.55
NKX3-1-201ENST00000380871 DNAJC30Q96LL9 226 aa11.59□□□□□ -0.55
NKX3-1-201ENST00000380871 LINC01600Q96MT4 127 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms