RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 MRPL52Q86TS9 123 aaKnown RBP13.85□□□□□ -0.19
CCDC28B-201ENST00000373602 C7orf77A4D0Y5 90 aa13.84□□□□□ -0.19
CCDC28B-201ENST00000373602 VCYO14598 125 aa13.84□□□□□ -0.19
CCDC28B-201ENST00000373602 PPP1R17O96001 155 aa13.84□□□□□ -0.19
CCDC28B-201ENST00000373602 FOXI1Q12951 378 aa13.84□□□□□ -0.19
CCDC28B-201ENST00000373602 HIGD2BQ4VC39 106 aa13.84□□□□□ -0.19
CCDC28B-201ENST00000373602 NRACQ8N912 160 aa13.84□□□□□ -0.19
CCDC28B-201ENST00000373602 GVQW2A0A096LPI5 108 aaPredicted RBP13.83□□□□□ -0.2
CCDC28B-201ENST00000373602 LINC00959A0A1B0GUT2 108 aa13.83□□□□□ -0.2
CCDC28B-201ENST00000373602 SMIM27A0A1W2PRY6 76 aa13.83□□□□□ -0.2
CCDC28B-201ENST00000373602 CDC42SE2Q9NRR3 84 aa13.83□□□□□ -0.2
CCDC28B-201ENST00000373602 SUMO2P61956 95 aaKnown RBP13.82□□□□□ -0.2
CCDC28B-201ENST00000373602 FAM104BQ5XKR9 115 aa13.82□□□□□ -0.2
CCDC28B-201ENST00000373602 CHTF8P0CG12 524 aa13.81□□□□□ -0.2
CCDC28B-201ENST00000373602 XCL1P47992 114 aa13.81□□□□□ -0.2
CCDC28B-201ENST00000373602 MRPL51Q4U2R6 128 aaKnown RBP13.81□□□□□ -0.2
CCDC28B-201ENST00000373602 SPACA4Q8TDM5 124 aa13.81□□□□□ -0.2
CCDC28B-201ENST00000373602 CCL25O15444 150 aa13.8□□□□□ -0.2
CCDC28B-201ENST00000373602 FCER1GP30273 86 aa13.8□□□□□ -0.2
CCDC28B-201ENST00000373602 ZNF664Q8N3J9 261 aa13.8□□□□□ -0.2
CCDC28B-201ENST00000373602 DPH3Q96FX2 82 aa13.8□□□□□ -0.2
CCDC28B-201ENST00000373602 A0A087WYN8 130 aa13.79□□□□□ -0.2
CCDC28B-201ENST00000373602 A0A1B0GW15 77 aa13.79□□□□□ -0.2
CCDC28B-201ENST00000373602 PPP1R2P9O14990 202 aa13.79□□□□□ -0.2
CCDC28B-201ENST00000373602 OXTP01178 125 aa13.79□□□□□ -0.2
CCDC28B-201ENST00000373602 SS18Q15532 418 aa13.79□□□□□ -0.2
CCDC28B-201ENST00000373602 CAMPP49913 170 aa13.78□□□□□ -0.2
CCDC28B-201ENST00000373602 HNRNPA3P51991 378 aaKnown RBP13.78□□□□□ -0.2
CCDC28B-201ENST00000373602 COX6A2Q02221 97 aa13.78□□□□□ -0.2
CCDC28B-201ENST00000373602 KIR2DL4Q99706 377 aa13.78□□□□□ -0.2
CCDC28B-201ENST00000373602 LRP1Q07954 4544 aaKnown RBP13.77□□□□□ -0.2
CCDC28B-201ENST00000373602 IGHV1-58A0A0C4DH39 117 aa13.77□□□□□ -0.21
CCDC28B-201ENST00000373602 LINC00862A6NCI5 91 aa13.77□□□□□ -0.21
CCDC28B-201ENST00000373602 CD164L2Q6UWJ8 174 aa13.77□□□□□ -0.21
CCDC28B-201ENST00000373602 CSDC2Q9Y534 153 aaKnown RBP13.77□□□□□ -0.21
CCDC28B-201ENST00000373602 SMAGPQ0VAQ4 97 aa13.76□□□□□ -0.21
CCDC28B-201ENST00000373602 PRSS3P2Q8NHM4 247 aa13.76□□□□□ -0.21
CCDC28B-201ENST00000373602 C20orf78Q9BR46 151 aa13.76□□□□□ -0.21
CCDC28B-201ENST00000373602 PLAC8Q9NZF1 115 aa13.76□□□□□ -0.21
CCDC28B-201ENST00000373602 UBE2D4Q9Y2X8 147 aa13.76□□□□□ -0.21
CCDC28B-201ENST00000373602 TRBV24-1A0A075B6N3 115 aa13.75□□□□□ -0.21
CCDC28B-201ENST00000373602 RPL32P62910 135 aaKnown RBP13.75□□□□□ -0.21
CCDC28B-201ENST00000373602 PKHD1L1Q86WI1 4243 aa13.75□□□□□ -0.21
CCDC28B-201ENST00000373602 CKS2P33552 79 aa13.74□□□□□ -0.21
CCDC28B-201ENST00000373602 FAT3Q8TDW7 4589 aa13.73□□□□□ -0.21
CCDC28B-201ENST00000373602 S100A8P05109 93 aa13.73□□□□□ -0.21
CCDC28B-201ENST00000373602 MRPL54Q6P161 138 aaKnown RBP13.73□□□□□ -0.21
CCDC28B-201ENST00000373602 A0A1B0GXF2 115 aa13.72□□□□□ -0.21
CCDC28B-201ENST00000373602 C1orf196B1AJZ1 125 aa13.72□□□□□ -0.21
CCDC28B-201ENST00000373602 HBBP68871 147 aa13.72□□□□□ -0.21
CCDC28B-201ENST00000373602 LINC00526Q96FQ7 95 aa13.72□□□□□ -0.21
CCDC28B-201ENST00000373602 TIMM21Q9BVV7 248 aa13.72□□□□□ -0.21
CCDC28B-201ENST00000373602 IGKV2-24A0A0C4DH68 120 aa13.71□□□□□ -0.21
CCDC28B-201ENST00000373602 TNFRSF6BO95407 300 aa13.71□□□□□ -0.21
CCDC28B-201ENST00000373602 MAJINQ3KP22 176 aa13.71□□□□□ -0.21
CCDC28B-201ENST00000373602 TMEM18Q96B42 140 aa13.71□□□□□ -0.21
CCDC28B-201ENST00000373602 F8W036 122 aa13.7□□□□□ -0.22
CCDC28B-201ENST00000373602 TCAPO15273 167 aa13.7□□□□□ -0.22
CCDC28B-201ENST00000373602 RNASE13Q5GAN3 156 aaKnown RBP13.7□□□□□ -0.22
CCDC28B-201ENST00000373602 A0A096LNI7 61 aa13.69□□□□□ -0.22
CCDC28B-201ENST00000373602 D6R8Y8 96 aa13.69□□□□□ -0.22
CCDC28B-201ENST00000373602 ZNF561-AS1K7EIQ3 104 aa13.69□□□□□ -0.22
CCDC28B-201ENST00000373602 CARD19Q96LW7 228 aa13.69□□□□□ -0.22
CCDC28B-201ENST00000373602 SMIM2Q9BVW6 85 aa13.69□□□□□ -0.22
CCDC28B-201ENST00000373602 Q6ZUT4 128 aa13.68□□□□□ -0.22
CCDC28B-201ENST00000373602 PKIGQ9Y2B9 76 aa13.68□□□□□ -0.22
CCDC28B-201ENST00000373602 TRAV13-1A0A0B4J241 112 aa13.67□□□□□ -0.22
CCDC28B-201ENST00000373602 COX7A2LO14548 114 aa13.67□□□□□ -0.22
CCDC28B-201ENST00000373602 PHOX2AO14813 284 aa13.67□□□□□ -0.22
CCDC28B-201ENST00000373602 NPYP01303 97 aa13.67□□□□□ -0.22
CCDC28B-201ENST00000373602 PPBPP02775 128 aa13.67□□□□□ -0.22
CCDC28B-201ENST00000373602 SYCNQ0VAF6 134 aa13.67□□□□□ -0.22
CCDC28B-201ENST00000373602 STPG4Q8N801 248 aa13.67□□□□□ -0.22
CCDC28B-201ENST00000373602 C7orf33Q8WU49 177 aa13.67□□□□□ -0.22
CCDC28B-201ENST00000373602 MALP21145 153 aa13.66□□□□□ -0.22
CCDC28B-201ENST00000373602 ATP5L2Q7Z4Y8 100 aa13.66□□□□□ -0.22
CCDC28B-201ENST00000373602 LINC00474Q9P2X8 69 aa13.66□□□□□ -0.22
CCDC28B-201ENST00000373602 RPL39P62891 51 aaKnown RBP13.65□□□□□ -0.22
CCDC28B-201ENST00000373602 Q6ZRU5 148 aa13.65□□□□□ -0.22
CCDC28B-201ENST00000373602 FAM104AQ969W3 186 aa13.64□□□□□ -0.23
CCDC28B-201ENST00000373602 IGLV4-69A0A075B6H9 119 aa13.63□□□□□ -0.23
CCDC28B-201ENST00000373602 SERTAD4-AS1Q5TG53 156 aa13.63□□□□□ -0.23
CCDC28B-201ENST00000373602 ORMDL3Q8N138 153 aa13.63□□□□□ -0.23
CCDC28B-201ENST00000373602 SPANXA1Q9NS26 97 aa13.63□□□□□ -0.23
CCDC28B-201ENST00000373602 PNRC1Q12796 327 aaPredicted RBP13.62□□□□□ -0.23
CCDC28B-201ENST00000373602 C5orf38Q86SI9 138 aa13.62□□□□□ -0.23
CCDC28B-201ENST00000373602 RAB14P61106 215 aa13.61□□□□□ -0.23
CCDC28B-201ENST00000373602 MRPS36P82909 103 aaKnown RBP13.61□□□□□ -0.23
CCDC28B-201ENST00000373602 TMEM136Q6ZRR5 245 aa13.61□□□□□ -0.23
CCDC28B-201ENST00000373602 APOMO95445 188 aa13.6□□□□□ -0.23
CCDC28B-201ENST00000373602 C2orf48Q96LS8 159 aa13.6□□□□□ -0.23
CCDC28B-201ENST00000373602 PRELID3AQ96N28 172 aa13.6□□□□□ -0.23
CCDC28B-201ENST00000373602 OPRPNQ99935 248 aaPredicted RBP13.6□□□□□ -0.23
CCDC28B-201ENST00000373602 ANAPC16Q96DE5 110 aa13.59□□□□□ -0.23
CCDC28B-201ENST00000373602 CAMK2N2Q96S95 79 aa13.59□□□□□ -0.23
CCDC28B-201ENST00000373602 LOC107984640A0A0U1RRK4 108 aa13.58□□□□□ -0.24
CCDC28B-201ENST00000373602 MT-ND4LP03901 98 aa13.58□□□□□ -0.24
CCDC28B-201ENST00000373602 PTTG1IPP53801 180 aa13.58□□□□□ -0.24
CCDC28B-201ENST00000373602 PRSS47A8MTI9 375 aa13.57□□□□□ -0.24
CCDC28B-201ENST00000373602 RAB5AP20339 215 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms