RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 LINC00526Q96FQ7 95 aa9.05□□□□□ -0.96
PRPF40A-201ENST00000354363 MRAP2Q96G30 205 aa9.04□□□□□ -0.96
PRPF40A-201ENST00000354363 CEBPGP53567 150 aa9.03□□□□□ -0.96
PRPF40A-201ENST00000354363 POLR2KP53803 58 aaKnown RBP9.03□□□□□ -0.96
PRPF40A-201ENST00000354363 ALKAL2Q6UX46 152 aa9.03□□□□□ -0.96
PRPF40A-201ENST00000354363 BORCS7Q96B45 105 aa9.03□□□□□ -0.96
PRPF40A-201ENST00000354363 CARD19Q96LW7 228 aa9.03□□□□□ -0.96
PRPF40A-201ENST00000354363 LINC01600Q96MT4 127 aa9.03□□□□□ -0.96
PRPF40A-201ENST00000354363 TMEM191AQ9H0A3 160 aa9.03□□□□□ -0.96
PRPF40A-201ENST00000354363 CDC42SE2Q9NRR3 84 aa9.03□□□□□ -0.96
PRPF40A-201ENST00000354363 A0A1B0GUT8 65 aa9.02□□□□□ -0.96
PRPF40A-201ENST00000354363 HIGD1CA8MV81 97 aa9.02□□□□□ -0.96
PRPF40A-201ENST00000354363 SS18Q15532 418 aa9.02□□□□□ -0.96
PRPF40A-201ENST00000354363 MRPL52Q86TS9 123 aaKnown RBP9.02□□□□□ -0.96
PRPF40A-201ENST00000354363 FAM210AQ96ND0 272 aa9.02□□□□□ -0.96
PRPF40A-201ENST00000354363 LINC00474Q9P2X8 69 aa9.02□□□□□ -0.96
PRPF40A-201ENST00000354363 PKIGQ9Y2B9 76 aa9.02□□□□□ -0.96
PRPF40A-201ENST00000354363 LRP2P98164 4655 aa9.02□□□□□ -0.97
PRPF40A-201ENST00000354363 TRBV27A0A0K0K1C4 114 aa9.02□□□□□ -0.97
PRPF40A-201ENST00000354363 RAB4AP20338 218 aa9.02□□□□□ -0.97
PRPF40A-201ENST00000354363 CD164L2Q6UWJ8 174 aa9.02□□□□□ -0.97
PRPF40A-201ENST00000354363 TSKUQ8WUA8 353 aa9.02□□□□□ -0.97
PRPF40A-201ENST00000354363 LINC01551Q86U37 167 aa9.01□□□□□ -0.97
PRPF40A-201ENST00000354363 ZNF664Q8N3J9 261 aa9.01□□□□□ -0.97
PRPF40A-201ENST00000354363 C7orf77A4D0Y5 90 aa9□□□□□ -0.97
PRPF40A-201ENST00000354363 SYCNQ0VAF6 134 aa9□□□□□ -0.97
PRPF40A-201ENST00000354363 AMN1Q8IY45 258 aa9□□□□□ -0.97
PRPF40A-201ENST00000354363 SMIM7Q9BQ49 75 aa9□□□□□ -0.97
PRPF40A-201ENST00000354363 ZNF561-AS1K7EIQ3 104 aa8.99□□□□□ -0.97
PRPF40A-201ENST00000354363 OSTCQ9NRP0 149 aa8.99□□□□□ -0.97
PRPF40A-201ENST00000354363 SMKR1H3BMG3 65 aa8.98□□□□□ -0.97
PRPF40A-201ENST00000354363 ODF1Q14990 250 aa8.98□□□□□ -0.97
PRPF40A-201ENST00000354363 SPINK6Q6UWN8 80 aa8.98□□□□□ -0.97
PRPF40A-201ENST00000354363 EIF5A2Q9GZV4 153 aaKnown RBP8.98□□□□□ -0.97
PRPF40A-201ENST00000354363 A0A0J9YXV3 536 aa8.98□□□□□ -0.97
PRPF40A-201ENST00000354363 CAMPP49913 170 aa8.98□□□□□ -0.97
PRPF40A-201ENST00000354363 PTTG1IPP53801 180 aa8.98□□□□□ -0.97
PRPF40A-201ENST00000354363 AKAP14Q86UN6 197 aa8.98□□□□□ -0.97
PRPF40A-201ENST00000354363 IGLV4-69A0A075B6H9 119 aa8.97□□□□□ -0.97
PRPF40A-201ENST00000354363 ZNF727A8MUV8 499 aa8.97□□□□□ -0.97
PRPF40A-201ENST00000354363 VCYO14598 125 aa8.97□□□□□ -0.97
PRPF40A-201ENST00000354363 C1orf196B1AJZ1 125 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 SRP19P09132 144 aaKnown RBP8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 FCER1GP30273 86 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 SRSF9Q13242 221 aaKnown RBP eCLIP8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 RIGQ13278 110 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 REG3GQ6UW15 175 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 Q6ZRP5 223 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 NRACQ8N912 160 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 NUP35Q8NFH5 326 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 ISOC2Q96AB3 205 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 UBE2D4Q9Y2X8 147 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 CSDC2Q9Y534 153 aaKnown RBP8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 V9GYV3 84 aa8.96□□□□□ -0.98
PRPF40A-201ENST00000354363 LOC107984640A0A0U1RRK4 108 aa8.95□□□□□ -0.98
PRPF40A-201ENST00000354363 COX7A2LO14548 114 aa8.95□□□□□ -0.98
PRPF40A-201ENST00000354363 MALP21145 153 aa8.95□□□□□ -0.98
PRPF40A-201ENST00000354363 KRTAP10-8P60410 259 aa8.95□□□□□ -0.98
PRPF40A-201ENST00000354363 SUMO2P61956 95 aaKnown RBP8.95□□□□□ -0.98
PRPF40A-201ENST00000354363 GAGE2BQ13066 116 aa8.95□□□□□ -0.98
PRPF40A-201ENST00000354363 RNASE13Q5GAN3 156 aaKnown RBP8.95□□□□□ -0.98
PRPF40A-201ENST00000354363 PPP1R17O96001 155 aa8.94□□□□□ -0.98
PRPF40A-201ENST00000354363 SMAGPQ0VAQ4 97 aa8.94□□□□□ -0.98
PRPF40A-201ENST00000354363 TRAV13-1A0A0B4J241 112 aa8.93□□□□□ -0.98
PRPF40A-201ENST00000354363 A0A1W2PNN7 141 aa8.93□□□□□ -0.98
PRPF40A-201ENST00000354363 CAMK2N2Q96S95 79 aa8.93□□□□□ -0.98
PRPF40A-201ENST00000354363 KIR2DL4Q99706 377 aa8.93□□□□□ -0.98
PRPF40A-201ENST00000354363 hCG_2014768A0A024R1R8 64 aa8.92□□□□□ -0.98
PRPF40A-201ENST00000354363 PPP1R2P9O14990 202 aa8.92□□□□□ -0.98
PRPF40A-201ENST00000354363 MRPL51Q4U2R6 128 aaKnown RBP8.92□□□□□ -0.98
PRPF40A-201ENST00000354363 Q6ZUT4 128 aa8.92□□□□□ -0.98
PRPF40A-201ENST00000354363 C5orf38Q86SI9 138 aa8.92□□□□□ -0.98
PRPF40A-201ENST00000354363 C2orf48Q96LS8 159 aa8.92□□□□□ -0.98
PRPF40A-201ENST00000354363 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.91□□□□□ -0.98
PRPF40A-201ENST00000354363 APOMO95445 188 aa8.91□□□□□ -0.98
PRPF40A-201ENST00000354363 FAM104BQ5XKR9 115 aa8.91□□□□□ -0.98
PRPF40A-201ENST00000354363 TIMM21Q9BVV7 248 aa8.91□□□□□ -0.98
PRPF40A-201ENST00000354363 NAT8BQ9UHF3 227 aa8.91□□□□□ -0.98
PRPF40A-201ENST00000354363 RPL23P62829 140 aaKnown RBP8.91□□□□□ -0.98
PRPF40A-201ENST00000354363 TMEM241Q24JQ0 296 aa8.91□□□□□ -0.98
PRPF40A-201ENST00000354363 TMEM18Q96B42 140 aa8.9□□□□□ -0.99
PRPF40A-201ENST00000354363 RPL18AQ02543 176 aaKnown RBP8.89□□□□□ -0.99
PRPF40A-201ENST00000354363 SPAG11BQ08648 103 aa8.89□□□□□ -0.99
PRPF40A-201ENST00000354363 FAM74A3Q4VXF1 159 aa8.89□□□□□ -0.99
PRPF40A-201ENST00000354363 C9orf116Q5BN46 136 aaPredicted RBP8.89□□□□□ -0.99
PRPF40A-201ENST00000354363 C20orf78Q9BR46 151 aa8.89□□□□□ -0.99
PRPF40A-201ENST00000354363 TRBV24-1A0A075B6N3 115 aa8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 SMIM27A0A1W2PRY6 76 aa8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 LINC00862A6NCI5 91 aa8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 RPL39P62891 51 aaKnown RBP8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 RPL32P62910 135 aaKnown RBP8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 RNF151Q2KHN1 245 aa8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 FAM104AQ969W3 186 aa8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 OPRPNQ99935 248 aaPredicted RBP8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 PSORS1C2Q9UIG4 136 aa8.88□□□□□ -0.99
PRPF40A-201ENST00000354363 ADIRFQ15847 76 aa8.87□□□□□ -0.99
PRPF40A-201ENST00000354363 RNF213Q63HN8 5207 aa8.87□□□□□ -0.99
PRPF40A-201ENST00000354363 MT-ND6P03923 174 aa8.87□□□□□ -0.99
PRPF40A-201ENST00000354363 CKS2P33552 79 aa8.87□□□□□ -0.99
PRPF40A-201ENST00000354363 PHF5AQ7RTV0 110 aaKnown RBP8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms