RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 LINC00173Q6ZV60 143 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 IGHV4-30-4P0DP06 118 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 IGHV4-31P0DP07 118 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 IGKV1D-37A0A075B6S9 117 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 ODF3BA8MYP8 253 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 DEFB114Q30KQ6 69 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 TRAV7A0A075B6U4 112 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 IGHV4-30-2A0A087WSY4 118 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 H3BPC8 53 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 CDPF1Q6NVV7 123 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 NHLRC4P0CG21 123 aaPredicted RBP4.01□□□□□ -1.77
SCN1A-201ENST00000303395 PRO0628Q9UI54 55 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 TMEM223A0PJW6 202 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 PMAIP1Q13794 54 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 Q8N976 141 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 POLQO75417 2590 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 WFDC2Q14508 124 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 DAZAP2Q15038 168 aaPredicted RBP4□□□□□ -1.77
SCN1A-201ENST00000303395 RITA1Q96K30 269 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4□□□□□ -1.77
SCN1A-201ENST00000303395 IGKV2-29A2NJV5 120 aaPredicted RBP4□□□□□ -1.77
SCN1A-201ENST00000303395 HILS1P60008 231 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 LINC00474Q9P2X8 69 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 VPREB3Q9UKI3 123 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 CR1P17927 2039 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 NUPR1O60356 82 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 C11orf45Q8TAV5 145 aa4□□□□□ -1.77
SCN1A-201ENST00000303395 POM121L12Q8N7R1 296 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 RPL28P46779 137 aaKnown RBP3.99□□□□□ -1.77
SCN1A-201ENST00000303395 NRGNQ92686 78 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 CRIP3Q6Q6R5 217 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 FAM19A1Q7Z5A9 133 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 ATP6V0E1O15342 81 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 Q0VFX4 171 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.99□□□□□ -1.77
SCN1A-201ENST00000303395 TRBV7-6A0A0J9YX20 115 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 RPL37AP8A6NKH3 93 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 CRYGDP07320 174 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 POLR2KP53803 58 aaKnown RBP3.99□□□□□ -1.77
SCN1A-201ENST00000303395 C1orf195Q5TG92 126 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 FAM19A3Q7Z5A8 133 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 C10orf55Q5SWW7 151 aa3.99□□□□□ -1.77
SCN1A-201ENST00000303395 EPG5Q9HCE0 2579 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 BLCAPP62952 87 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 LINC00337Q8N6G1 96 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 KLK12Q9UKR0 248 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 LECT2O14960 151 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 TMEM254Q8TBM7 123 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 LINC01548A6NM66 108 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 KLLNB2CW77 178 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 K7ERJ3 54 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 CXCL6P80162 114 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 C20orf197Q8N268 126 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 A0A096LNI7 61 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 WISP1O95388 367 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 IGLV2-11P01706 119 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 NANOS2P60321 138 aaKnown RBP3.98□□□□□ -1.77
SCN1A-201ENST00000303395 Q8N7P7 452 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 APRG1Q8IVJ8 170 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 LY6G6EA0A0G2JKS1 128 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 ACYP2P14621 99 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 PLA2G2CQ5R387 149 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 ASPHD1Q5U4P2 390 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 RUSC1-AS1Q66K80 236 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 U3KQA8 63 aa3.98□□□□□ -1.77
SCN1A-201ENST00000303395 TMEM263Q8WUH6 116 aaKnown RBP3.97□□□□□ -1.77
SCN1A-201ENST00000303395 TRBV6-4A0A1B0GX49 114 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 LINC00310P59036 64 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 LINC00322Q6ZN03 302 aaPredicted RBP3.97□□□□□ -1.77
SCN1A-201ENST00000303395 SPTBN4Q9H254 2564 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 PINLYPA6NC86 204 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 WIPF1O43516 503 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 SPRY2O43597 315 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 DHRS4-AS1Q9P1J3 65 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 CPAMD8Q8IZJ3 1885 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 A0A0G2JNJ9 132 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 K7ENP7 123 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 ADAMTS20P59510 1910 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 IGFL4Q6B9Z1 124 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 Q9UFV3 132 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 NAV2Q8IVL1 2488 aa3.97□□□□□ -1.77
SCN1A-201ENST00000303395 IGHV7-81A0A0B4J1V7 117 aa3.96□□□□□ -1.77
SCN1A-201ENST00000303395 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.96□□□□□ -1.77
SCN1A-201ENST00000303395 MAPK1IP1LQ8NDC0 245 aa3.96□□□□□ -1.77
SCN1A-201ENST00000303395 LINC00308Q8TCZ7 52 aa3.96□□□□□ -1.77
SCN1A-201ENST00000303395 WFDC10AQ9H1F0 79 aa3.96□□□□□ -1.77
SCN1A-201ENST00000303395 C10orf25Q5T742 122 aa3.96□□□□□ -1.78
SCN1A-201ENST00000303395 HRCT1Q6UXD1 115 aa3.96□□□□□ -1.78
SCN1A-201ENST00000303395 RNF144BQ7Z419 303 aa3.96□□□□□ -1.78
SCN1A-201ENST00000303395 Q8N6K4 173 aa3.96□□□□□ -1.78
SCN1A-201ENST00000303395 PIP4P1Q86T03 277 aa3.96□□□□□ -1.78
SCN1A-201ENST00000303395 LY6LH3BQJ8 138 aa3.95□□□□□ -1.78
SCN1A-201ENST00000303395 DEFB135Q30KP9 77 aa3.95□□□□□ -1.78
SCN1A-201ENST00000303395 DCANP1Q8TF63 244 aa3.95□□□□□ -1.78
SCN1A-201ENST00000303395 MT-ATP8P03928 68 aa3.95□□□□□ -1.78
SCN1A-201ENST00000303395 SPINT4Q6UDR6 99 aa3.95□□□□□ -1.78
SCN1A-201ENST00000303395 C5orf56Q8N8D9 126 aa3.95□□□□□ -1.78
SCN1A-201ENST00000303395 C1orf158Q8N1D5 194 aa3.95□□□□□ -1.78
SCN1A-201ENST00000303395 BRWD1-AS2P59051 145 aa3.95□□□□□ -1.78
SCN1A-201ENST00000303395 ZFHX2Q9C0A1 2572 aaPredicted RBP3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms