RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CRIP2P52943 208 aaPredicted RBP11.48□□□□□ -0.57
SHH-201ENST00000297261 TMEM61Q8N0U2 210 aa11.48□□□□□ -0.57
SHH-201ENST00000297261 COX7A2LO14548 114 aa11.48□□□□□ -0.57
SHH-201ENST00000297261 CNFNQ9BYD5 112 aa11.48□□□□□ -0.57
SHH-201ENST00000297261 A0A0J9YX75 114 aa11.47□□□□□ -0.57
SHH-201ENST00000297261 SLURP1P55000 103 aa11.47□□□□□ -0.57
SHH-201ENST00000297261 CMC4P56277 68 aaPredicted RBP11.47□□□□□ -0.57
SHH-201ENST00000297261 hADV29S1A0JD25 119 aa11.47□□□□□ -0.57
SHH-201ENST00000297261 ANGP03950 147 aaKnown RBP11.46□□□□□ -0.57
SHH-201ENST00000297261 UBE2D1P51668 147 aa11.46□□□□□ -0.57
SHH-201ENST00000297261 ZMAT4Q9H898 229 aa11.46□□□□□ -0.57
SHH-201ENST00000297261 COX7B2Q8TF08 81 aa11.46□□□□□ -0.58
SHH-201ENST00000297261 TRAV23DV6A0A075B6W5 121 aa11.45□□□□□ -0.58
SHH-201ENST00000297261 RNASE3P12724 160 aaKnown RBP11.45□□□□□ -0.58
SHH-201ENST00000297261 PSMB8P28062 276 aa11.45□□□□□ -0.58
SHH-201ENST00000297261 IGHV4-31P0DP07 118 aa11.45□□□□□ -0.58
SHH-201ENST00000297261 BOD1L1Q8NFC6 3051 aa11.44□□□□□ -0.58
SHH-201ENST00000297261 M0QY20 66 aa11.44□□□□□ -0.58
SHH-201ENST00000297261 C3orf22Q8N5N4 141 aa11.44□□□□□ -0.58
SHH-201ENST00000297261 WFDC11Q8NEX6 87 aa11.44□□□□□ -0.58
SHH-201ENST00000297261 IGLV10-54A0A075B6I4 117 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 TRBV27A0A0K0K1C4 114 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 KRTAP10-9P60411 292 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 PIK3CD-AS1Q5SR53 167 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 C20orf197Q8N268 126 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 IGHV4-4A0A075B6R2 117 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 K7EMT4 169 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 AVPP01185 164 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 HIST2H2BDQ6DRA6 164 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 IGHV4OR15-8A0A075B7B6 117 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 A0A087WW49 117 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 PROK1P58294 105 aa11.43□□□□□ -0.58
SHH-201ENST00000297261 MUC3AQ02505 3323 aa11.42□□□□□ -0.58
SHH-201ENST00000297261 POLR2KP53803 58 aaKnown RBP11.42□□□□□ -0.58
SHH-201ENST00000297261 LINC00308Q8TCZ7 52 aa11.42□□□□□ -0.58
SHH-201ENST00000297261 LINC00467Q9BRT7 94 aa11.42□□□□□ -0.58
SHH-201ENST00000297261 MRGPRG-AS1Q2M3A8 158 aa11.42□□□□□ -0.58
SHH-201ENST00000297261 GPHB5Q86YW7 130 aa11.41□□□□□ -0.58
SHH-201ENST00000297261 F5H768 121 aa11.41□□□□□ -0.58
SHH-201ENST00000297261 UBE2D3P61077 147 aa11.41□□□□□ -0.58
SHH-201ENST00000297261 UBE2D2P62837 147 aa11.41□□□□□ -0.58
SHH-201ENST00000297261 LRRC75A-AS1Q8N1F1 130 aa11.41□□□□□ -0.58
SHH-201ENST00000297261 CITED2Q99967 270 aaPredicted RBP11.41□□□□□ -0.58
SHH-201ENST00000297261 H7C423 109 aa11.41□□□□□ -0.58
SHH-201ENST00000297261 TMEM263Q8WUH6 116 aaKnown RBP11.41□□□□□ -0.58
SHH-201ENST00000297261 ZNF561-AS1K7EIQ3 104 aa11.4□□□□□ -0.58
SHH-201ENST00000297261 K7EQD1 137 aa11.4□□□□□ -0.58
SHH-201ENST00000297261 JMJD1CQ15652 2540 aa11.4□□□□□ -0.58
SHH-201ENST00000297261 NDUFA7O95182 113 aa11.4□□□□□ -0.58
SHH-201ENST00000297261 CDIP1Q9H305 208 aa11.4□□□□□ -0.58
SHH-201ENST00000297261 LST1O00453 97 aa11.4□□□□□ -0.59
SHH-201ENST00000297261 DAD1P61803 113 aa11.4□□□□□ -0.59
SHH-201ENST00000297261 SLPIP03973 132 aa11.39□□□□□ -0.59
SHH-201ENST00000297261 TSPEAR-AS2P59090 65 aa11.39□□□□□ -0.59
SHH-201ENST00000297261 IGIPA6NJ69 53 aa11.39□□□□□ -0.59
SHH-201ENST00000297261 TMEM258P61165 79 aa11.38□□□□□ -0.59
SHH-201ENST00000297261 Q6ZSV7 163 aa11.38□□□□□ -0.59
SHH-201ENST00000297261 JMJD7-PLA2G4BH0Y9G9 81 aa11.38□□□□□ -0.59
SHH-201ENST00000297261 C10orf99Q6UWK7 81 aa11.37□□□□□ -0.59
SHH-201ENST00000297261 FRYQ5TBA9 3013 aa11.37□□□□□ -0.59
SHH-201ENST00000297261 PRB2P02812 416 aaPredicted RBP11.36□□□□□ -0.59
SHH-201ENST00000297261 TSHBP01222 138 aa11.36□□□□□ -0.59
SHH-201ENST00000297261 Q6YL49 198 aa11.36□□□□□ -0.59
SHH-201ENST00000297261 IGLV2-18A0A075B6J9 118 aa11.35□□□□□ -0.59
SHH-201ENST00000297261 TRBV6-5A0A0K0K1A5 114 aa11.35□□□□□ -0.59
SHH-201ENST00000297261 NCR3O14931 201 aa11.35□□□□□ -0.59
SHH-201ENST00000297261 POM121L12Q8N7R1 296 aa11.35□□□□□ -0.59
SHH-201ENST00000297261 C5orf47Q569G3 176 aa11.35□□□□□ -0.59
SHH-201ENST00000297261 DMXL1Q9Y485 3027 aa11.35□□□□□ -0.59
SHH-201ENST00000297261 ANKRD17O75179 2603 aaKnown RBP11.35□□□□□ -0.59
SHH-201ENST00000297261 CLPSL1A2RUU4 121 aa11.35□□□□□ -0.59
SHH-201ENST00000297261 ESM1Q9NQ30 184 aa11.35□□□□□ -0.59
SHH-201ENST00000297261 MTORP42345 2549 aa11.34□□□□□ -0.59
SHH-201ENST00000297261 PRM2P04554 102 aa11.34□□□□□ -0.59
SHH-201ENST00000297261 LINC00694P0DN24 101 aa11.34□□□□□ -0.59
SHH-201ENST00000297261 ZNF580Q9UK33 172 aa11.34□□□□□ -0.59
SHH-201ENST00000297261 FASNP49327 2511 aaKnown RBP11.34□□□□□ -0.59
SHH-201ENST00000297261 IGLV4-69A0A075B6H9 119 aa11.34□□□□□ -0.59
SHH-201ENST00000297261 M0QXV9 152 aa11.34□□□□□ -0.59
SHH-201ENST00000297261 GYPEP15421 78 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 DEFB105AQ8NG35 78 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 IMUPQ9GZP8 106 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 K7EQG2 157 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 CRYGDP07320 174 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 TIRAPP58753 221 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 F8WEM9 126 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 Q6Q795 121 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 RNF152Q8N8N0 203 aa11.33□□□□□ -0.6
SHH-201ENST00000297261 TMEM89A2RUT3 159 aa11.32□□□□□ -0.6
SHH-201ENST00000297261 NDUFA1O15239 70 aa11.32□□□□□ -0.6
SHH-201ENST00000297261 IGHV4-28A0A0C4DH34 117 aa11.32□□□□□ -0.6
SHH-201ENST00000297261 F8W735 103 aaPredicted RBP11.32□□□□□ -0.6
SHH-201ENST00000297261 CCL24O00175 119 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 SMCPP49901 116 aaPredicted RBP11.31□□□□□ -0.6
SHH-201ENST00000297261 NBEAQ8NFP9 2946 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 DNAJC9-AS1A6NH13 148 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 USP17L23D6RBM5 183 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 COX7CP15954 63 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 Q6ZTI0 123 aa11.31□□□□□ -0.6
SHH-201ENST00000297261 TMEM256-PLSCR3K7ERE1 68 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms