RNA–Protein interactions for RNA: ENST00000261415.11

COL4A3BP-201, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 1 (best) BASIC

Gene COL4A3BP, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-201ENST00000261415 DEFB114Q30KQ6 69 aa13.93□□□□□ -0.18
COL4A3BP-201ENST00000261415 TRBV30A0A0K0K1B3 111 aa13.93□□□□□ -0.18
COL4A3BP-201ENST00000261415 TMEM61Q8N0U2 210 aa13.93□□□□□ -0.18
COL4A3BP-201ENST00000261415 COL6A5A8TX70 2615 aa13.93□□□□□ -0.18
COL4A3BP-201ENST00000261415 C20orf173Q96LM9 149 aa13.92□□□□□ -0.18
COL4A3BP-201ENST00000261415 MRPL53Q96EL3 112 aaKnown RBP13.92□□□□□ -0.18
COL4A3BP-201ENST00000261415 K7EQG2 157 aa13.91□□□□□ -0.18
COL4A3BP-201ENST00000261415 Q1RN00 199 aa13.91□□□□□ -0.18
COL4A3BP-201ENST00000261415 ZNRF2Q8NHG8 242 aa13.9□□□□□ -0.18
COL4A3BP-201ENST00000261415 PRAC2D3DTV9 90 aa13.9□□□□□ -0.18
COL4A3BP-201ENST00000261415 C2orf66Q6UXQ4 117 aa13.9□□□□□ -0.18
COL4A3BP-201ENST00000261415 TRAV26-2A0A0B4J265 109 aa13.89□□□□□ -0.19
COL4A3BP-201ENST00000261415 RBAKDNA6NC62 111 aa13.89□□□□□ -0.19
COL4A3BP-201ENST00000261415 Q8TAT8 98 aa13.89□□□□□ -0.19
COL4A3BP-201ENST00000261415 IGHV4-4A0A075B6R2 117 aa13.88□□□□□ -0.19
COL4A3BP-201ENST00000261415 GAGE2AQ6NT46 116 aa13.88□□□□□ -0.19
COL4A3BP-201ENST00000261415 CRYGAP11844 174 aa13.88□□□□□ -0.19
COL4A3BP-201ENST00000261415 SPATA3Q8NHX4 192 aa13.88□□□□□ -0.19
COL4A3BP-201ENST00000261415 TRRAPQ9Y4A5 3859 aa13.88□□□□□ -0.19
COL4A3BP-201ENST00000261415 COX7CP15954 63 aa13.87□□□□□ -0.19
COL4A3BP-201ENST00000261415 SUMO2P61956 95 aaKnown RBP13.87□□□□□ -0.19
COL4A3BP-201ENST00000261415 EDA2RQ9HAV5 297 aa13.87□□□□□ -0.19
COL4A3BP-201ENST00000261415 H7C2G1 150 aa13.87□□□□□ -0.19
COL4A3BP-201ENST00000261415 H7C423 109 aa13.87□□□□□ -0.19
COL4A3BP-201ENST00000261415 IGLV1-51P01701 117 aa13.87□□□□□ -0.19
COL4A3BP-201ENST00000261415 SNRPD3P62318 126 aaKnown RBP13.87□□□□□ -0.19
COL4A3BP-201ENST00000261415 C11orf86A6NJI1 115 aa13.86□□□□□ -0.19
COL4A3BP-201ENST00000261415 COX6CP09669 75 aa13.85□□□□□ -0.19
COL4A3BP-201ENST00000261415 DEFB1P60022 68 aa13.85□□□□□ -0.19
COL4A3BP-201ENST00000261415 MRAPQ8TCY5 172 aa13.85□□□□□ -0.19
COL4A3BP-201ENST00000261415 LGALS3P17931 250 aaKnown RBP13.85□□□□□ -0.19
COL4A3BP-201ENST00000261415 LINC00643Q86TS7 51 aa13.85□□□□□ -0.19
COL4A3BP-201ENST00000261415 SPANXN1Q5VSR9 72 aa13.84□□□□□ -0.19
COL4A3BP-201ENST00000261415 ZNF256Q9Y2P7 627 aaPredicted RBP13.84□□□□□ -0.19
COL4A3BP-201ENST00000261415 NOTCH3Q9UM47 2321 aa13.84□□□□□ -0.19
COL4A3BP-201ENST00000261415 IGLV4-69A0A075B6H9 119 aa13.84□□□□□ -0.19
COL4A3BP-201ENST00000261415 J3QQQ9 107 aa13.84□□□□□ -0.19
COL4A3BP-201ENST00000261415 F5H768 121 aa13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 F6UB75 175 aa13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 EIF4EBP3O60516 100 aaPredicted RBP13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 CRYGDP07320 174 aa13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 CXCL5P42830 114 aa13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 IGKV3D-20A0A0C4DH25 116 aa13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 CEMP1Q6PRD7 247 aaPredicted RBP13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 C9orf47Q6ZRZ4 202 aa13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 AMELXQ99217 191 aa13.83□□□□□ -0.2
COL4A3BP-201ENST00000261415 TRIAP1O43715 76 aa13.82□□□□□ -0.2
COL4A3BP-201ENST00000261415 AGPAT4-IT1Q9H0P7 198 aa13.82□□□□□ -0.2
COL4A3BP-201ENST00000261415 KLK5Q9Y337 293 aaPredicted RBP13.81□□□□□ -0.2
COL4A3BP-201ENST00000261415 PPP1R17O96001 155 aa13.81□□□□□ -0.2
COL4A3BP-201ENST00000261415 TSPEAR-AS2P59090 65 aa13.81□□□□□ -0.2
COL4A3BP-201ENST00000261415 MUSTN1Q8IVN3 82 aa13.81□□□□□ -0.2
COL4A3BP-201ENST00000261415 C9orf66Q5T8R8 295 aa13.8□□□□□ -0.2
COL4A3BP-201ENST00000261415 ZNF22P17026 224 aaPredicted RBP13.8□□□□□ -0.2
COL4A3BP-201ENST00000261415 DEFB131AP59861 70 aa13.8□□□□□ -0.2
COL4A3BP-201ENST00000261415 WFDC9Q8NEX5 89 aa13.8□□□□□ -0.2
COL4A3BP-201ENST00000261415 MAP6D1Q9H9H5 199 aa13.8□□□□□ -0.2
COL4A3BP-201ENST00000261415 TRACP01848 142 aa13.79□□□□□ -0.2
COL4A3BP-201ENST00000261415 TMEM258P61165 79 aa13.79□□□□□ -0.2
COL4A3BP-201ENST00000261415 TMEM141Q96I45 108 aa13.79□□□□□ -0.2
COL4A3BP-201ENST00000261415 TMEM223A0PJW6 202 aa13.78□□□□□ -0.2
COL4A3BP-201ENST00000261415 M0R381 172 aa13.78□□□□□ -0.2
COL4A3BP-201ENST00000261415 C14orf178Q8N769 122 aaPredicted RBP13.78□□□□□ -0.2
COL4A3BP-201ENST00000261415 LINC00477Q96M19 166 aa13.78□□□□□ -0.2
COL4A3BP-201ENST00000261415 ICOSQ9Y6W8 199 aa13.78□□□□□ -0.2
COL4A3BP-201ENST00000261415 A0A0J9YX75 114 aa13.78□□□□□ -0.2
COL4A3BP-201ENST00000261415 ODF3L2Q3SX64 289 aa13.78□□□□□ -0.2
COL4A3BP-201ENST00000261415 ANK2Q01484 3957 aa13.76□□□□□ -0.21
COL4A3BP-201ENST00000261415 ATOX1O00244 68 aa13.76□□□□□ -0.21
COL4A3BP-201ENST00000261415 LEPROTO15243 131 aa13.76□□□□□ -0.21
COL4A3BP-201ENST00000261415 PKD1L1Q8TDX9 2849 aa13.76□□□□□ -0.21
COL4A3BP-201ENST00000261415 BEAN1Q3B7T3 259 aa13.76□□□□□ -0.21
COL4A3BP-201ENST00000261415 C5orf38Q86SI9 138 aa13.76□□□□□ -0.21
COL4A3BP-201ENST00000261415 DPH3Q96FX2 82 aa13.76□□□□□ -0.21
COL4A3BP-201ENST00000261415 C2orf48Q96LS8 159 aa13.76□□□□□ -0.21
COL4A3BP-201ENST00000261415 LST1O00453 97 aa13.75□□□□□ -0.21
COL4A3BP-201ENST00000261415 MDFIQ99750 246 aa13.75□□□□□ -0.21
COL4A3BP-201ENST00000261415 LENEPQ9Y5L5 61 aa13.75□□□□□ -0.21
COL4A3BP-201ENST00000261415 CMYA5Q8N3K9 4069 aa13.75□□□□□ -0.21
COL4A3BP-201ENST00000261415 SDHAF1A6NFY7 115 aa13.75□□□□□ -0.21
COL4A3BP-201ENST00000261415 APRG1Q8IVJ8 170 aa13.75□□□□□ -0.21
COL4A3BP-201ENST00000261415 KIR2DL5BQ8NHK3 375 aa13.75□□□□□ -0.21
COL4A3BP-201ENST00000261415 C11orf21Q9P2W6 132 aa13.75□□□□□ -0.21
COL4A3BP-201ENST00000261415 KNCNA6PVL3 124 aa13.74□□□□□ -0.21
COL4A3BP-201ENST00000261415 DPH3P1Q9H4G8 78 aa13.74□□□□□ -0.21
COL4A3BP-201ENST00000261415 IGIPA6NJ69 53 aa13.74□□□□□ -0.21
COL4A3BP-201ENST00000261415 FAM19A4Q96LR4 140 aa13.74□□□□□ -0.21
COL4A3BP-201ENST00000261415 TIMM17AQ99595 171 aa13.74□□□□□ -0.21
COL4A3BP-201ENST00000261415 TSHBP01222 138 aa13.73□□□□□ -0.21
COL4A3BP-201ENST00000261415 SDIM1Q6ZPB5 146 aa13.73□□□□□ -0.21
COL4A3BP-201ENST00000261415 IGKV3-20P01619 116 aa13.73□□□□□ -0.21
COL4A3BP-201ENST00000261415 ZNF876PQ49A33 203 aa13.72□□□□□ -0.21
COL4A3BP-201ENST00000261415 CMC4P56277 68 aaPredicted RBP13.71□□□□□ -0.21
COL4A3BP-201ENST00000261415 ZFAND2AQ8N6M9 145 aa13.71□□□□□ -0.21
COL4A3BP-201ENST00000261415 PRR9Q5T870 116 aa13.71□□□□□ -0.21
COL4A3BP-201ENST00000261415 RPL39LQ96EH5 51 aaKnown RBP13.71□□□□□ -0.21
COL4A3BP-201ENST00000261415 TP53TG1Q9Y2A0 90 aa13.71□□□□□ -0.21
COL4A3BP-201ENST00000261415 C19orf73Q9NVV2 129 aa13.7□□□□□ -0.22
COL4A3BP-201ENST00000261415 HIST1H4AP62805 103 aaKnown RBP13.7□□□□□ -0.22
COL4A3BP-201ENST00000261415 hADV29S1A0JD25 119 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms