RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ODF3L2Q3SX64 289 aa15.41■□□□□ 0.06
TRIM28-201ENST00000253024 STHQ8IWL8 128 aa15.41■□□□□ 0.06
TRIM28-201ENST00000253024 UBE2D4Q9Y2X8 147 aa15.41■□□□□ 0.06
TRIM28-201ENST00000253024 TMEM263Q8WUH6 116 aaKnown RBP15.41■□□□□ 0.06
TRIM28-201ENST00000253024 GAGE12JA6NER3 117 aa15.4■□□□□ 0.06
TRIM28-201ENST00000253024 GAGE4Q13068 117 aa15.4■□□□□ 0.06
TRIM28-201ENST00000253024 GAGE5Q13069 117 aa15.4■□□□□ 0.06
TRIM28-201ENST00000253024 C11orf72Q8NBR9 251 aa15.39■□□□□ 0.05
TRIM28-201ENST00000253024 SLC25A20O43772 301 aa15.39■□□□□ 0.05
TRIM28-201ENST00000253024 CLEC2BQ92478 149 aa15.39■□□□□ 0.05
TRIM28-201ENST00000253024 INSP01308 110 aa15.39■□□□□ 0.05
TRIM28-201ENST00000253024 VWFP04275 2813 aa15.39■□□□□ 0.05
TRIM28-201ENST00000253024 ZNF843Q8N446 348 aa15.38■□□□□ 0.05
TRIM28-201ENST00000253024 TRIAP1O43715 76 aa15.37■□□□□ 0.05
TRIM28-201ENST00000253024 XGP55808 180 aa15.37■□□□□ 0.05
TRIM28-201ENST00000253024 CDIP1Q9H305 208 aa15.37■□□□□ 0.05
TRIM28-201ENST00000253024 NOP10Q9NPE3 64 aaKnown RBP15.37■□□□□ 0.05
TRIM28-201ENST00000253024 LOC100131303A0A0U1RQF7 123 aa15.36■□□□□ 0.05
TRIM28-201ENST00000253024 CITED2Q99967 270 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-201ENST00000253024 IGHV1-58A0A0C4DH39 117 aa15.36■□□□□ 0.05
TRIM28-201ENST00000253024 FSHBP01225 129 aa15.36■□□□□ 0.05
TRIM28-201ENST00000253024 NTN5Q8WTR8 489 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-201ENST00000253024 MRPS36P82909 103 aaKnown RBP15.36■□□□□ 0.05
TRIM28-201ENST00000253024 TEN1Q86WV5 123 aa15.36■□□□□ 0.05
TRIM28-201ENST00000253024 C1orf158Q8N1D5 194 aa15.36■□□□□ 0.05
TRIM28-201ENST00000253024 ESM1Q9NQ30 184 aa15.36■□□□□ 0.05
TRIM28-201ENST00000253024 C4orf3Q8WVX3 66 aa15.35■□□□□ 0.05
TRIM28-201ENST00000253024 SPATA25Q9BR10 227 aa15.35■□□□□ 0.05
TRIM28-201ENST00000253024 VSIG2Q96IQ7 327 aa15.35■□□□□ 0.05
TRIM28-201ENST00000253024 LITAFQ99732 161 aa15.34■□□□□ 0.05
TRIM28-201ENST00000253024 TEX49A0A1B0GTD5 131 aa15.34■□□□□ 0.05
TRIM28-201ENST00000253024 DNAJC9-AS1A6NH13 148 aa15.34■□□□□ 0.05
TRIM28-201ENST00000253024 LYRM7Q5U5X0 104 aa15.33■□□□□ 0.05
TRIM28-201ENST00000253024 GAGE7O76087 117 aa15.33■□□□□ 0.04
TRIM28-201ENST00000253024 GAGE12FP0CL80 117 aa15.33■□□□□ 0.04
TRIM28-201ENST00000253024 GAGE12GP0CL81 117 aa15.33■□□□□ 0.04
TRIM28-201ENST00000253024 GAGE12IP0CL82 117 aa15.33■□□□□ 0.04
TRIM28-201ENST00000253024 CCL24O00175 119 aa15.32■□□□□ 0.04
TRIM28-201ENST00000253024 PPDPFLQ8WWR9 84 aa15.32■□□□□ 0.04
TRIM28-201ENST00000253024 Q9H8V8 135 aa15.32■□□□□ 0.04
TRIM28-201ENST00000253024 A0A1B0GV72 72 aa15.31■□□□□ 0.04
TRIM28-201ENST00000253024 TMEM101Q96IK0 257 aa15.3■□□□□ 0.04
TRIM28-201ENST00000253024 TRBV20-1A0A075B6N2 111 aa15.3■□□□□ 0.04
TRIM28-201ENST00000253024 PYGO1Q9Y3Y4 419 aa15.3■□□□□ 0.04
TRIM28-201ENST00000253024 CKS1BP61024 79 aa15.29■□□□□ 0.04
TRIM28-201ENST00000253024 RNF152Q8N8N0 203 aa15.29■□□□□ 0.04
TRIM28-201ENST00000253024 TRGV2A0A075B6R0 118 aa15.29■□□□□ 0.04
TRIM28-201ENST00000253024 RPL13AP40429 203 aaKnown RBP15.28■□□□□ 0.04
TRIM28-201ENST00000253024 NTM-AS1Q6ZSK4 140 aa15.28■□□□□ 0.04
TRIM28-201ENST00000253024 TOMM7Q9P0U1 55 aa15.28■□□□□ 0.04
TRIM28-201ENST00000253024 LINC01620Q4KN68 170 aa15.27■□□□□ 0.04
TRIM28-201ENST00000253024 TINCRA0A1B0GVN0 87 aa15.27■□□□□ 0.03
TRIM28-201ENST00000253024 MEIG1Q5JSS6 88 aa15.27■□□□□ 0.03
TRIM28-201ENST00000253024 KRTAP1-3Q8IUG1 177 aa15.26■□□□□ 0.03
TRIM28-201ENST00000253024 SPANXA1Q9NS26 97 aa15.26■□□□□ 0.03
TRIM28-201ENST00000253024 ICOSQ9Y6W8 199 aa15.26■□□□□ 0.03
TRIM28-201ENST00000253024 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.26■□□□□ 0.03
TRIM28-201ENST00000253024 A0A0B4J2C4 111 aa15.25■□□□□ 0.03
TRIM28-201ENST00000253024 LINC00242Q5T6M2 205 aa15.25■□□□□ 0.03
TRIM28-201ENST00000253024 C11orf68Q9H3H3 251 aaKnown RBP15.25■□□□□ 0.03
TRIM28-201ENST00000253024 MIAQ16674 131 aa15.24■□□□□ 0.03
TRIM28-201ENST00000253024 UNC79Q9P2D8 2635 aa15.24■□□□□ 0.03
TRIM28-201ENST00000253024 TRAV26-1A0A087WT03 109 aa15.24■□□□□ 0.03
TRIM28-201ENST00000253024 RS1O15537 224 aa15.24■□□□□ 0.03
TRIM28-201ENST00000253024 YAE1D1Q9NRH1 226 aa15.24■□□□□ 0.03
TRIM28-201ENST00000253024 ATXN8Q156A1 80 aa15.23■□□□□ 0.03
TRIM28-201ENST00000253024 PIK3CD-AS1Q5SR53 167 aa15.23■□□□□ 0.03
TRIM28-201ENST00000253024 GAGE6Q13070 117 aa15.23■□□□□ 0.03
TRIM28-201ENST00000253024 C2orf82Q6UX34 121 aa15.23■□□□□ 0.03
TRIM28-201ENST00000253024 PRIMA1Q86XR5 153 aa15.23■□□□□ 0.03
TRIM28-201ENST00000253024 A0A096LPF7 62 aa15.22■□□□□ 0.03
TRIM28-201ENST00000253024 RPL36AP83881 106 aaKnown RBP15.22■□□□□ 0.03
TRIM28-201ENST00000253024 RPL36ALQ969Q0 106 aaKnown RBP15.22■□□□□ 0.03
TRIM28-201ENST00000253024 SMR3AQ99954 134 aa15.22■□□□□ 0.03
TRIM28-201ENST00000253024 DEFB130BP0DP73 79 aa15.21■□□□□ 0.03
TRIM28-201ENST00000253024 DEFB130AP0DP74 79 aa15.21■□□□□ 0.03
TRIM28-201ENST00000253024 ZFAND6Q6FIF0 208 aa15.21■□□□□ 0.02
TRIM28-201ENST00000253024 Q8N2B8 174 aa15.21■□□□□ 0.02
TRIM28-201ENST00000253024 K7EQD1 137 aa15.2■□□□□ 0.02
TRIM28-201ENST00000253024 CRLF1O75462 422 aa15.2■□□□□ 0.02
TRIM28-201ENST00000253024 CRYBA4P53673 196 aa15.2■□□□□ 0.02
TRIM28-201ENST00000253024 ATP6V0E2Q8NHE4 81 aa15.2■□□□□ 0.02
TRIM28-201ENST00000253024 PDZD2O15018 2839 aa15.19■□□□□ 0.02
TRIM28-201ENST00000253024 ATRQ13535 2644 aa15.19■□□□□ 0.02
TRIM28-201ENST00000253024 UBE2L6O14933 153 aa15.19■□□□□ 0.02
TRIM28-201ENST00000253024 BEAN1Q3B7T3 259 aa15.19■□□□□ 0.02
TRIM28-201ENST00000253024 CLPSL2Q6UWE3 100 aa15.18■□□□□ 0.02
TRIM28-201ENST00000253024 SOSTDC1Q6X4U4 206 aa15.18■□□□□ 0.02
TRIM28-201ENST00000253024 TENM1Q9UKZ4 2725 aa15.18■□□□□ 0.02
TRIM28-201ENST00000253024 A8MTW9 85 aa15.18■□□□□ 0.02
TRIM28-201ENST00000253024 SCGB1A1P11684 91 aa15.18■□□□□ 0.02
TRIM28-201ENST00000253024 TRGV4A0A0C4DH28 118 aa15.17■□□□□ 0.02
TRIM28-201ENST00000253024 H7C423 109 aa15.17■□□□□ 0.02
TRIM28-201ENST00000253024 LINC01006Q8NI28 216 aa15.17■□□□□ 0.02
TRIM28-201ENST00000253024 SMIM1B2RUZ4 78 aa15.16■□□□□ 0.02
TRIM28-201ENST00000253024 GIG44P09565 113 aaPredicted RBP15.16■□□□□ 0.02
TRIM28-201ENST00000253024 SBSPONQ8IVN8 264 aa15.15■□□□□ 0.02
TRIM28-201ENST00000253024 LINC00308Q8TCZ7 52 aa15.15■□□□□ 0.02
TRIM28-201ENST00000253024 COX6CP09669 75 aa15.15■□□□□ 0.02
TRIM28-201ENST00000253024 TTC32Q5I0X7 151 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms