RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 GDF5OSQ5U4N7 250 aa9.51□□□□□ -0.89
USP40-201ENST00000251722 C22orf34Q6ZV56 151 aa9.5□□□□□ -0.89
USP40-201ENST00000251722 A0A0J9YXY3 114 aa9.5□□□□□ -0.89
USP40-201ENST00000251722 PRR15LQ9BU68 103 aa9.5□□□□□ -0.89
USP40-201ENST00000251722 MED13Q9UHV7 2174 aa9.5□□□□□ -0.89
USP40-201ENST00000251722 RPL39P62891 51 aaKnown RBP9.5□□□□□ -0.89
USP40-201ENST00000251722 LINC00322Q6ZN03 302 aaPredicted RBP9.5□□□□□ -0.89
USP40-201ENST00000251722 FAM19A3Q7Z5A8 133 aa9.5□□□□□ -0.89
USP40-201ENST00000251722 CEP192Q8TEP8 1941 aa9.5□□□□□ -0.89
USP40-201ENST00000251722 ZFHX2Q9C0A1 2572 aaPredicted RBP9.49□□□□□ -0.89
USP40-201ENST00000251722 MAPKAPK5-AS1Q8N8E1 139 aa9.49□□□□□ -0.89
USP40-201ENST00000251722 ZNF706Q9Y5V0 76 aaPredicted RBP9.49□□□□□ -0.89
USP40-201ENST00000251722 SPTAN1Q13813 2472 aaKnown RBP9.49□□□□□ -0.89
USP40-201ENST00000251722 TRBV27A0A0K0K1C4 114 aa9.49□□□□□ -0.89
USP40-201ENST00000251722 LINC00310P59036 64 aa9.49□□□□□ -0.89
USP40-201ENST00000251722 CADP27708 2225 aa9.49□□□□□ -0.89
USP40-201ENST00000251722 NUPR2A6NF83 97 aa9.49□□□□□ -0.89
USP40-201ENST00000251722 BRWD1-AS2P59051 145 aa9.49□□□□□ -0.89
USP40-201ENST00000251722 UBE2D3P61077 147 aa9.49□□□□□ -0.89
USP40-201ENST00000251722 UBE2D2P62837 147 aa9.49□□□□□ -0.89
USP40-201ENST00000251722 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.48□□□□□ -0.894e-8■■■■■ 40.1
USP40-201ENST00000251722 CHCHD10Q8WYQ3 142 aaPredicted RBP9.48□□□□□ -0.89
USP40-201ENST00000251722 HIVEP2P31629 2446 aa9.48□□□□□ -0.89
USP40-201ENST00000251722 TRBV6-8A0A0A6YYG3 113 aa9.48□□□□□ -0.89
USP40-201ENST00000251722 TRBV6-5A0A0K0K1A5 114 aa9.48□□□□□ -0.89
USP40-201ENST00000251722 ALPK3Q96L96 1907 aa9.48□□□□□ -0.89
USP40-201ENST00000251722 LINC00474Q9P2X8 69 aa9.48□□□□□ -0.89
USP40-201ENST00000251722 SOSTDC1Q6X4U4 206 aa9.48□□□□□ -0.89
USP40-201ENST00000251722 PLAC8L1A1L4L8 177 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 IBA57-AS1B1ANH7 110 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 IGLV2-8P01709 118 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 HIGD2BQ4VC39 106 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 LELP1Q5T871 98 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 CHCHD7Q9BUK0 85 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 TRBV7-6A0A0J9YX20 115 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 TMEM223A0PJW6 202 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 NCR3O14931 201 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 MIR7-3HGQ8N6C7 128 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.47□□□□□ -0.89
USP40-201ENST00000251722 CXCL6P80162 114 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 LINC00269Q8N2A0 174 aa9.47□□□□□ -0.89
USP40-201ENST00000251722 CRIP3Q6Q6R5 217 aa9.46□□□□□ -0.89
USP40-201ENST00000251722 IGHV4-28A0A0C4DH34 117 aa9.46□□□□□ -0.9
USP40-201ENST00000251722 NEXN-AS1Q8NBZ9 246 aa9.46□□□□□ -0.9
USP40-201ENST00000251722 PCNX1Q96RV3 2341 aa9.45□□□□□ -0.9
USP40-201ENST00000251722 U3KQK5 164 aa9.45□□□□□ -0.9
USP40-201ENST00000251722 NBASA2RRP1 2371 aa9.45□□□□□ -0.9
USP40-201ENST00000251722 LRP4O75096 1905 aa9.44□□□□□ -0.9
USP40-201ENST00000251722 BPY2O14599 106 aa9.44□□□□□ -0.9
USP40-201ENST00000251722 CASC2Q6XLA1 102 aa9.44□□□□□ -0.9
USP40-201ENST00000251722 ZNF80P51504 273 aaPredicted RBP9.44□□□□□ -0.9
USP40-201ENST00000251722 SYCNQ0VAF6 134 aa9.43□□□□□ -0.9
USP40-201ENST00000251722 KLLNB2CW77 178 aa9.42□□□□□ -0.9
USP40-201ENST00000251722 ESRGQ1W209 222 aa9.42□□□□□ -0.9
USP40-201ENST00000251722 IGHV4-4A0A075B6R2 117 aa9.42□□□□□ -0.9
USP40-201ENST00000251722 M0QY20 66 aa9.42□□□□□ -0.9
USP40-201ENST00000251722 UBE2D1P51668 147 aa9.42□□□□□ -0.9
USP40-201ENST00000251722 C1orf229Q6ZS94 237 aaPredicted RBP9.42□□□□□ -0.9
USP40-201ENST00000251722 FAM208BQ5VWN6 2430 aa9.42□□□□□ -0.9
USP40-201ENST00000251722 DEFB1P60022 68 aa9.41□□□□□ -0.9
USP40-201ENST00000251722 CD164L2Q6UWJ8 174 aa9.41□□□□□ -0.9
USP40-201ENST00000251722 Q6ZPA2 131 aa9.41□□□□□ -0.9
USP40-201ENST00000251722 BCE1O60756 84 aa9.4□□□□□ -0.9
USP40-201ENST00000251722 KPRPQ5T749 579 aaPredicted RBP9.4□□□□□ -0.9
USP40-201ENST00000251722 LINC00467Q9BRT7 94 aa9.4□□□□□ -0.9
USP40-201ENST00000251722 IGLV4-69A0A075B6H9 119 aa9.4□□□□□ -0.9
USP40-201ENST00000251722 NRACQ8N912 160 aa9.4□□□□□ -0.9
USP40-201ENST00000251722 NHLRC4P0CG21 123 aaPredicted RBP9.39□□□□□ -0.91
USP40-201ENST00000251722 LINC00482Q8N8I6 264 aa9.39□□□□□ -0.91
USP40-201ENST00000251722 DOPEY2Q9Y3R5 2298 aa9.39□□□□□ -0.91
USP40-201ENST00000251722 ANKHD1Q8IWZ3 2542 aaKnown RBP9.39□□□□□ -0.91
USP40-201ENST00000251722 COX17Q14061 63 aa9.38□□□□□ -0.91
USP40-201ENST00000251722 DSCAMO60469 2012 aa9.38□□□□□ -0.91
USP40-201ENST00000251722 ZNF22P17026 224 aaPredicted RBP9.38□□□□□ -0.91
USP40-201ENST00000251722 IGKV2-24A0A0C4DH68 120 aa9.38□□□□□ -0.91
USP40-201ENST00000251722 PRYO14603 147 aa9.38□□□□□ -0.91
USP40-201ENST00000251722 IGLV4-3A0A075B6K6 122 aa9.38□□□□□ -0.91
USP40-201ENST00000251722 DHRS4-AS1Q9P1J3 65 aa9.38□□□□□ -0.91
USP40-201ENST00000251722 FAM19A1Q7Z5A9 133 aa9.37□□□□□ -0.91
USP40-201ENST00000251722 IGLV1-51P01701 117 aa9.37□□□□□ -0.91
USP40-201ENST00000251722 PTPRQQ9UMZ3 2332 aa9.37□□□□□ -0.91
USP40-201ENST00000251722 A0A087WZ39 114 aa9.37□□□□□ -0.91
USP40-201ENST00000251722 ZNF295-AS1Q8N0V1 137 aa9.37□□□□□ -0.91
USP40-201ENST00000251722 DCANP1Q8TF63 244 aa9.37□□□□□ -0.91
USP40-201ENST00000251722 CREBBPQ92793 2442 aa9.37□□□□□ -0.91
USP40-201ENST00000251722 K7ERS5 55 aa9.36□□□□□ -0.91
USP40-201ENST00000251722 A8MZ25 164 aa9.36□□□□□ -0.91
USP40-201ENST00000251722 EDN2P20800 178 aa9.36□□□□□ -0.91
USP40-201ENST00000251722 ABCA1O95477 2261 aa9.35□□□□□ -0.91
USP40-201ENST00000251722 BBC3Q96PG8 261 aaPredicted RBP9.35□□□□□ -0.91
USP40-201ENST00000251722 TTC28Q96AY4 2481 aa9.35□□□□□ -0.91
USP40-201ENST00000251722 IGHV4-30-4P0DP06 118 aa9.35□□□□□ -0.91
USP40-201ENST00000251722 M0R378 163 aa9.35□□□□□ -0.91
USP40-201ENST00000251722 OTOGLQ3ZCN5 2332 aa9.35□□□□□ -0.91
USP40-201ENST00000251722 PSPHP1O15172 72 aa9.34□□□□□ -0.91
USP40-201ENST00000251722 LIMD2Q9BT23 127 aa9.34□□□□□ -0.91
USP40-201ENST00000251722 HIGD2AQ9BW72 106 aa9.34□□□□□ -0.91
USP40-201ENST00000251722 PTPRSQ13332 1948 aa9.34□□□□□ -0.91
USP40-201ENST00000251722 PCDH15Q96QU1 1955 aa9.34□□□□□ -0.91
USP40-201ENST00000251722 CCKP06307 115 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 140.9 ms