RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 RPP21Q9H633 154 aaKnown RBP13.56□□□□□ -0.24
NEDD8-201ENST00000250495 FAM231BA6NCW3 169 aa13.55□□□□□ -0.24
NEDD8-201ENST00000250495 NDUFA6P56556 154 aa13.55□□□□□ -0.24
NEDD8-201ENST00000250495 SERTAD4-AS1Q5TG53 156 aa13.55□□□□□ -0.24
NEDD8-201ENST00000250495 SDIM1Q6ZPB5 146 aa13.55□□□□□ -0.24
NEDD8-201ENST00000250495 GNB1LQ9BYB4 327 aa13.55□□□□□ -0.24
NEDD8-201ENST00000250495 GFRA4Q9GZZ7 299 aa13.55□□□□□ -0.24
NEDD8-201ENST00000250495 TRAPPC1Q9Y5R8 145 aa13.55□□□□□ -0.24
NEDD8-201ENST00000250495 IGLV4-60A0A075B6I1 120 aa13.54□□□□□ -0.24
NEDD8-201ENST00000250495 UBE2L6O14933 153 aa13.54□□□□□ -0.24
NEDD8-201ENST00000250495 NAT8BQ9UHF3 227 aa13.54□□□□□ -0.24
NEDD8-201ENST00000250495 hDV102S1A0JD36 115 aa13.53□□□□□ -0.24
NEDD8-201ENST00000250495 A8MWL6 223 aa13.53□□□□□ -0.24
NEDD8-201ENST00000250495 AKR1D1P51857 326 aa13.53□□□□□ -0.24
NEDD8-201ENST00000250495 CNBPP62633 177 aaKnown RBP13.53□□□□□ -0.24
NEDD8-201ENST00000250495 COTL1Q14019 142 aa13.53□□□□□ -0.24
NEDD8-201ENST00000250495 TWIST1Q15672 202 aa13.53□□□□□ -0.24
NEDD8-201ENST00000250495 ATP5L2Q7Z4Y8 100 aa13.53□□□□□ -0.24
NEDD8-201ENST00000250495 AP5S1Q9NUS5 200 aa13.53□□□□□ -0.24
NEDD8-201ENST00000250495 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.53□□□□□ -0.24
NEDD8-201ENST00000250495 LRP1Q07954 4544 aaKnown RBP13.51□□□□□ -0.25
NEDD8-201ENST00000250495 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.51□□□□□ -0.25
NEDD8-201ENST00000250495 CTRLP40313 264 aa13.51□□□□□ -0.25
NEDD8-201ENST00000250495 AMTP48728 403 aa13.51□□□□□ -0.25
NEDD8-201ENST00000250495 CNFNQ9BYD5 112 aa13.51□□□□□ -0.25
NEDD8-201ENST00000250495 LINC00518Q8N0U6 118 aa13.5□□□□□ -0.25
NEDD8-201ENST00000250495 SMIM6P0DI80 62 aa13.49□□□□□ -0.25
NEDD8-201ENST00000250495 HIST3H2BBQ8N257 126 aa13.49□□□□□ -0.25
NEDD8-201ENST00000250495 NUP35Q8NFH5 326 aa13.49□□□□□ -0.25
NEDD8-201ENST00000250495 MRPL18Q9H0U6 180 aaKnown RBP13.49□□□□□ -0.25
NEDD8-201ENST00000250495 IGHV3-64A0A075B6Q5 118 aa13.48□□□□□ -0.25
NEDD8-201ENST00000250495 PANO1I0J062 215 aa13.48□□□□□ -0.25
NEDD8-201ENST00000250495 TMEM136Q6ZRR5 245 aa13.48□□□□□ -0.25
NEDD8-201ENST00000250495 GATD1Q8NB37 220 aa13.48□□□□□ -0.25
NEDD8-201ENST00000250495 DPH3Q96FX2 82 aa13.48□□□□□ -0.25
NEDD8-201ENST00000250495 HIGD1CA8MV81 97 aa13.47□□□□□ -0.25
NEDD8-201ENST00000250495 FOXA3P55318 350 aaPredicted RBP13.47□□□□□ -0.25
NEDD8-201ENST00000250495 CFAP161Q6P656 301 aa13.47□□□□□ -0.25
NEDD8-201ENST00000250495 SMIM15Q7Z3B0 74 aa13.47□□□□□ -0.25
NEDD8-201ENST00000250495 FAT3Q8TDW7 4589 aa13.46□□□□□ -0.25
NEDD8-201ENST00000250495 A0A1B0GXF2 115 aa13.46□□□□□ -0.25
NEDD8-201ENST00000250495 S100A2P29034 98 aa13.46□□□□□ -0.25
NEDD8-201ENST00000250495 CIRBPQ14011 172 aaKnown RBP13.46□□□□□ -0.25
NEDD8-201ENST00000250495 SLPIP03973 132 aa13.45□□□□□ -0.26
NEDD8-201ENST00000250495 MRPL54Q6P161 138 aaKnown RBP13.45□□□□□ -0.26
NEDD8-201ENST00000250495 RNF185Q96GF1 192 aa13.45□□□□□ -0.26
NEDD8-201ENST00000250495 TRAV26-2A0A0B4J265 109 aa13.44□□□□□ -0.26
NEDD8-201ENST00000250495 IFITM10A6NMD0 228 aa13.44□□□□□ -0.26
NEDD8-201ENST00000250495 NCR2O95944 276 aa13.44□□□□□ -0.26
NEDD8-201ENST00000250495 HNRNPA3P51991 378 aaKnown RBP13.44□□□□□ -0.26
NEDD8-201ENST00000250495 AMMECR1LQ6DCA0 310 aa13.44□□□□□ -0.26
NEDD8-201ENST00000250495 A0A1B0GW15 77 aa13.43□□□□□ -0.26
NEDD8-201ENST00000250495 GAGE12HA6NDE8 117 aa13.43□□□□□ -0.26
NEDD8-201ENST00000250495 H7C423 109 aa13.43□□□□□ -0.26
NEDD8-201ENST00000250495 HBBP68871 147 aa13.43□□□□□ -0.26
NEDD8-201ENST00000250495 GTSF1Q8WW33 167 aa13.43□□□□□ -0.26
NEDD8-201ENST00000250495 PKHD1L1Q86WI1 4243 aa13.43□□□□□ -0.26
NEDD8-201ENST00000250495 IGKV3OR2-268A0A0C4DH90 116 aa13.42□□□□□ -0.26
NEDD8-201ENST00000250495 APCSP02743 223 aa13.41□□□□□ -0.26
NEDD8-201ENST00000250495 RPL39LQ96EH5 51 aaKnown RBP13.41□□□□□ -0.26
NEDD8-201ENST00000250495 C12orf57Q99622 126 aa13.41□□□□□ -0.26
NEDD8-201ENST00000250495 A0A087WYN8 130 aa13.4□□□□□ -0.26
NEDD8-201ENST00000250495 ESDP10768 282 aa13.4□□□□□ -0.26
NEDD8-201ENST00000250495 RNASEKQ6P5S7 137 aaKnown RBP13.4□□□□□ -0.26
NEDD8-201ENST00000250495 C15orf56Q8N910 161 aa13.4□□□□□ -0.26
NEDD8-201ENST00000250495 HIST1H2BLQ99880 126 aa13.4□□□□□ -0.26
NEDD8-201ENST00000250495 SDHAF1A6NFY7 115 aa13.39□□□□□ -0.27
NEDD8-201ENST00000250495 SPACA4Q8TDM5 124 aa13.39□□□□□ -0.27
NEDD8-201ENST00000250495 CHCHD10Q8WYQ3 142 aaPredicted RBP13.39□□□□□ -0.27
NEDD8-201ENST00000250495 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.38□□□□□ -0.27
NEDD8-201ENST00000250495 IGKV2-29A2NJV5 120 aaPredicted RBP13.38□□□□□ -0.27
NEDD8-201ENST00000250495 CHTF8P0CG12 524 aa13.38□□□□□ -0.27
NEDD8-201ENST00000250495 FGF6P10767 208 aa13.38□□□□□ -0.27
NEDD8-201ENST00000250495 Q6ZRU5 148 aa13.38□□□□□ -0.27
NEDD8-201ENST00000250495 TMEM18Q96B42 140 aa13.38□□□□□ -0.27
NEDD8-201ENST00000250495 PLA2G2DQ9UNK4 145 aa13.38□□□□□ -0.27
NEDD8-201ENST00000250495 A0A1B0GUT8 65 aa13.37□□□□□ -0.27
NEDD8-201ENST00000250495 I3L3M4 83 aa13.37□□□□□ -0.27
NEDD8-201ENST00000250495 FABP4P15090 132 aa13.37□□□□□ -0.27
NEDD8-201ENST00000250495 PMCHP20382 165 aa13.37□□□□□ -0.27
NEDD8-201ENST00000250495 RIGQ13278 110 aa13.37□□□□□ -0.27
NEDD8-201ENST00000250495 BORCS7Q96B45 105 aa13.37□□□□□ -0.27
NEDD8-201ENST00000250495 PACRGQ96M98 296 aaPredicted RBP13.37□□□□□ -0.27
NEDD8-201ENST00000250495 ZNF25P17030 456 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-201ENST00000250495 COX6A2Q02221 97 aa13.36□□□□□ -0.27
NEDD8-201ENST00000250495 PDZD11Q5EBL8 140 aa13.36□□□□□ -0.27
NEDD8-201ENST00000250495 OR10D4PQ8NGN7 298 aa13.36□□□□□ -0.27
NEDD8-201ENST00000250495 PLAC8Q9NZF1 115 aa13.36□□□□□ -0.27
NEDD8-201ENST00000250495 TRBV6-5A0A0K0K1A5 114 aa13.35□□□□□ -0.27
NEDD8-201ENST00000250495 HIGD2BQ4VC39 106 aa13.35□□□□□ -0.27
NEDD8-201ENST00000250495 TMEM101Q96IK0 257 aa13.35□□□□□ -0.27
NEDD8-201ENST00000250495 CAMPP49913 170 aa13.34□□□□□ -0.27
NEDD8-201ENST00000250495 OR5A1Q8NGJ0 315 aa13.34□□□□□ -0.27
NEDD8-201ENST00000250495 GVQW2A0A096LPI5 108 aaPredicted RBP13.33□□□□□ -0.28
NEDD8-201ENST00000250495 BAGE3Q86Y29 109 aa13.33□□□□□ -0.28
NEDD8-201ENST00000250495 C7orf33Q8WU49 177 aa13.33□□□□□ -0.28
NEDD8-201ENST00000250495 PRSS3P2Q8NHM4 247 aa13.32□□□□□ -0.28
NEDD8-201ENST00000250495 ST20Q9HBF5 79 aa13.32□□□□□ -0.28
NEDD8-201ENST00000250495 LINC00310P59036 64 aa13.31□□□□□ -0.28
NEDD8-201ENST00000250495 FOXI1Q12951 378 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms