RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 H7C2G1 150 aa12.43□□□□□ -0.42
FOXA1-201ENST00000250448 SPINK13Q1W4C9 94 aa12.42□□□□□ -0.42
FOXA1-201ENST00000250448 M0R2P5 195 aa12.42□□□□□ -0.42
FOXA1-201ENST00000250448 SNRPD3P62318 126 aaKnown RBP12.42□□□□□ -0.42
FOXA1-201ENST00000250448 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.41□□□□□ -0.42
FOXA1-201ENST00000250448 C4orf3Q8WVX3 66 aa12.41□□□□□ -0.42
FOXA1-201ENST00000250448 TMEM262E9PQX1 116 aa12.4□□□□□ -0.42
FOXA1-201ENST00000250448 K7EQG2 157 aa12.4□□□□□ -0.42
FOXA1-201ENST00000250448 A0A0J9YXY3 114 aa12.4□□□□□ -0.42
FOXA1-201ENST00000250448 Q1RN00 199 aa12.4□□□□□ -0.42
FOXA1-201ENST00000250448 SMIM9A6NGZ8 99 aa12.4□□□□□ -0.43
FOXA1-201ENST00000250448 NHLRC4P0CG21 123 aaPredicted RBP12.4□□□□□ -0.43
FOXA1-201ENST00000250448 TENM1Q9UKZ4 2725 aa12.39□□□□□ -0.43
FOXA1-201ENST00000250448 TRGV11A0A075B6L2 103 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE12JA6NER3 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE7O76087 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE12FP0CL80 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE12GP0CL81 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE12IP0CL82 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 IGHV3-30-3P0DP02 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 GAGE4Q13068 117 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 ATXN8Q156A1 80 aa12.38□□□□□ -0.43
FOXA1-201ENST00000250448 CYSRT1A8MQ03 144 aa12.37□□□□□ -0.43
FOXA1-201ENST00000250448 TIMM21Q9BVV7 248 aa12.37□□□□□ -0.43
FOXA1-201ENST00000250448 MRPL23Q16540 153 aaKnown RBP12.37□□□□□ -0.43
FOXA1-201ENST00000250448 LINC01620Q4KN68 170 aa12.37□□□□□ -0.43
FOXA1-201ENST00000250448 C16orf95Q9H693 158 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 PYGO1Q9Y3Y4 419 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 ADARB2-AS1A8MUL3 147 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 ATRQ13535 2644 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 LITAFQ99732 161 aa12.36□□□□□ -0.43
FOXA1-201ENST00000250448 MRPS36P82909 103 aaKnown RBP12.35□□□□□ -0.43
FOXA1-201ENST00000250448 NTN5Q8WTR8 489 aaPredicted RBP12.35□□□□□ -0.43
FOXA1-201ENST00000250448 ZFAND6Q6FIF0 208 aa12.35□□□□□ -0.43
FOXA1-201ENST00000250448 FAM104AQ969W3 186 aa12.35□□□□□ -0.43
FOXA1-201ENST00000250448 EDA2RQ9HAV5 297 aa12.35□□□□□ -0.43
FOXA1-201ENST00000250448 TRBV30A0A0K0K1B3 111 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 TRAV8-3A0A0A6YYJ7 113 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 F8WDY8 70 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 TRIAP1O43715 76 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 VWFP04275 2813 aa12.34□□□□□ -0.43
FOXA1-201ENST00000250448 CCL24O00175 119 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 KRTAP10-3P60369 221 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 IGHV3-73A0A0B4J1V6 119 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 PROK1P58294 105 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 LINC01600Q96MT4 127 aa12.33□□□□□ -0.44
FOXA1-201ENST00000250448 RBMY1A1P0DJD3 496 aaKnown RBP12.32□□□□□ -0.44
FOXA1-201ENST00000250448 RBMY1CP0DJD4 496 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 RBMY1FQ15415 496 aaKnown RBP12.32□□□□□ -0.44
FOXA1-201ENST00000250448 CEMP1Q6PRD7 247 aaPredicted RBP12.32□□□□□ -0.44
FOXA1-201ENST00000250448 C3orf56Q8N813 242 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 NOTCH3Q9UM47 2321 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 IGHV1-58A0A0C4DH39 117 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 SPANXDQ9BXN6 97 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 SPANXCQ9NY87 97 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 TRBV10-2A0A0K0K1G8 114 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 RNASE13Q5GAN3 156 aaKnown RBP12.32□□□□□ -0.44
FOXA1-201ENST00000250448 TMEM61Q8N0U2 210 aa12.32□□□□□ -0.44
FOXA1-201ENST00000250448 LOC107984640A0A0U1RRK4 108 aa12.31□□□□□ -0.44
FOXA1-201ENST00000250448 CRLF1O75462 422 aa12.31□□□□□ -0.44
FOXA1-201ENST00000250448 NDUFA12Q9UI09 145 aa12.31□□□□□ -0.44
FOXA1-201ENST00000250448 PRSS2P07478 247 aa12.31□□□□□ -0.44
FOXA1-201ENST00000250448 RPL13AP40429 203 aaKnown RBP12.3□□□□□ -0.44
FOXA1-201ENST00000250448 ADAMTSL4-AS1Q5T5F5 129 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 PEMTQ9UBM1 199 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 ICOSQ9Y6W8 199 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 NDUFA7O95182 113 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 DYNLRB2Q8TF09 96 aa12.3□□□□□ -0.44
FOXA1-201ENST00000250448 HTN1P15515 57 aa12.29□□□□□ -0.44
FOXA1-201ENST00000250448 MIAQ16674 131 aa12.29□□□□□ -0.44
FOXA1-201ENST00000250448 F5H768 121 aa12.29□□□□□ -0.44
FOXA1-201ENST00000250448 VSIG2Q96IQ7 327 aa12.29□□□□□ -0.44
FOXA1-201ENST00000250448 TINCRA0A1B0GVN0 87 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 TEX49A0A1B0GTD5 131 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 H3BMM0 161 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 SNCGO76070 127 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 UBE2WQ96B02 151 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 SPANXA1Q9NS26 97 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 KNCNA6PVL3 124 aa12.28□□□□□ -0.44
FOXA1-201ENST00000250448 TRAV8-4A0A0B4J246 113 aa12.27□□□□□ -0.45
FOXA1-201ENST00000250448 CHCHD7Q9BUK0 85 aa12.27□□□□□ -0.45
FOXA1-201ENST00000250448 UBE2D4Q9Y2X8 147 aa12.27□□□□□ -0.45
FOXA1-201ENST00000250448 NACAE9PAV3 2078 aa12.27□□□□□ -0.45
FOXA1-201ENST00000250448 A8MZ25 164 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 NPC2P61916 151 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 DEFB114Q30KQ6 69 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 C2orf82Q6UX34 121 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 GAGE2BQ13066 116 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 GAGE2EQ4V326 116 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 GAGE2DQ9UEU5 116 aa12.26□□□□□ -0.45
FOXA1-201ENST00000250448 TRAV4A0A0B4J268 109 aa12.25□□□□□ -0.45
FOXA1-201ENST00000250448 DEFB131AP59861 70 aa12.25□□□□□ -0.45
FOXA1-201ENST00000250448 Q9UF83 564 aa12.25□□□□□ -0.45
FOXA1-201ENST00000250448 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.25□□□□□ -0.45
FOXA1-201ENST00000250448 IGKV2-29A2NJV5 120 aaPredicted RBP12.25□□□□□ -0.45
FOXA1-201ENST00000250448 COX6CP09669 75 aa12.24□□□□□ -0.45
FOXA1-201ENST00000250448 Q6ZSN1 163 aa12.24□□□□□ -0.45
FOXA1-201ENST00000250448 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.24□□□□□ -0.45
FOXA1-201ENST00000250448 H3BT86 120 aa12.24□□□□□ -0.45
FOXA1-201ENST00000250448 H7C423 109 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms