RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 PHOX2AO14813 284 aa13.96□□□□□ -0.17
VTI1B-201ENST00000216456 MT1HL1P0DM35 61 aa13.96□□□□□ -0.17
VTI1B-201ENST00000216456 POLR2KP53803 58 aaKnown RBP13.96□□□□□ -0.17
VTI1B-201ENST00000216456 MAJINQ3KP22 176 aa13.96□□□□□ -0.17
VTI1B-201ENST00000216456 OSTCQ9NRP0 149 aa13.96□□□□□ -0.17
VTI1B-201ENST00000216456 PLAC8Q9NZF1 115 aa13.96□□□□□ -0.17
VTI1B-201ENST00000216456 C9JQL5 133 aa13.95□□□□□ -0.18
VTI1B-201ENST00000216456 SERTAD4-AS1Q5TG53 156 aa13.95□□□□□ -0.18
VTI1B-201ENST00000216456 A0A096LNI7 61 aa13.94□□□□□ -0.18
VTI1B-201ENST00000216456 ZNF25P17030 456 aaPredicted RBP13.94□□□□□ -0.18
VTI1B-201ENST00000216456 NUP35Q8NFH5 326 aa13.94□□□□□ -0.18
VTI1B-201ENST00000216456 BTF3L4Q96K17 158 aa13.94□□□□□ -0.18
VTI1B-201ENST00000216456 NDUFS6O75380 124 aaKnown RBP13.93□□□□□ -0.18
VTI1B-201ENST00000216456 MRAP2Q96G30 205 aa13.93□□□□□ -0.18
VTI1B-201ENST00000216456 TMEM101Q96IK0 257 aa13.93□□□□□ -0.18
VTI1B-201ENST00000216456 RNASE13Q5GAN3 156 aaKnown RBP13.92□□□□□ -0.18
VTI1B-201ENST00000216456 ISOC2Q96AB3 205 aa13.92□□□□□ -0.18
VTI1B-201ENST00000216456 CDC42SE2Q9NRR3 84 aa13.92□□□□□ -0.18
VTI1B-201ENST00000216456 UBR4Q5T4S7 5183 aa13.91□□□□□ -0.18
VTI1B-201ENST00000216456 TRBV27A0A0K0K1C4 114 aa13.91□□□□□ -0.18
VTI1B-201ENST00000216456 RPL23P62829 140 aaKnown RBP13.91□□□□□ -0.18
VTI1B-201ENST00000216456 SRSF3P84103 164 aaKnown RBP13.91□□□□□ -0.18
VTI1B-201ENST00000216456 STPG4Q8N801 248 aa13.91□□□□□ -0.18
VTI1B-201ENST00000216456 NRACQ8N912 160 aa13.91□□□□□ -0.18
VTI1B-201ENST00000216456 C7orf77A4D0Y5 90 aa13.89□□□□□ -0.19
VTI1B-201ENST00000216456 MRPL52Q86TS9 123 aaKnown RBP13.89□□□□□ -0.19
VTI1B-201ENST00000216456 ZNF664Q8N3J9 261 aa13.89□□□□□ -0.19
VTI1B-201ENST00000216456 PLA2G2DQ9UNK4 145 aa13.89□□□□□ -0.19
VTI1B-201ENST00000216456 RIGQ13278 110 aa13.88□□□□□ -0.19
VTI1B-201ENST00000216456 IGHV1-58A0A0C4DH39 117 aa13.87□□□□□ -0.19
VTI1B-201ENST00000216456 ADIRFQ15847 76 aa13.87□□□□□ -0.19
VTI1B-201ENST00000216456 TMEM241Q24JQ0 296 aa13.87□□□□□ -0.19
VTI1B-201ENST00000216456 MRPL51Q4U2R6 128 aaKnown RBP13.87□□□□□ -0.19
VTI1B-201ENST00000216456 Q6ZRU5 148 aa13.87□□□□□ -0.19
VTI1B-201ENST00000216456 SS18Q15532 418 aa13.86□□□□□ -0.19
VTI1B-201ENST00000216456 TNXBP22105 4242 aa13.85□□□□□ -0.19
VTI1B-201ENST00000216456 VCYO14598 125 aa13.85□□□□□ -0.19
VTI1B-201ENST00000216456 FCER1GP30273 86 aa13.85□□□□□ -0.19
VTI1B-201ENST00000216456 SUMO2P61956 95 aaKnown RBP13.85□□□□□ -0.19
VTI1B-201ENST00000216456 ODF1Q14990 250 aa13.85□□□□□ -0.19
VTI1B-201ENST00000216456 CD164L2Q6UWJ8 174 aa13.85□□□□□ -0.19
VTI1B-201ENST00000216456 C7orf33Q8WU49 177 aa13.85□□□□□ -0.19
VTI1B-201ENST00000216456 CARD19Q96LW7 228 aa13.85□□□□□ -0.19
VTI1B-201ENST00000216456 UBE2D4Q9Y2X8 147 aa13.85□□□□□ -0.19
VTI1B-201ENST00000216456 CAMPP49913 170 aa13.84□□□□□ -0.19
VTI1B-201ENST00000216456 NAT8BQ9UHF3 227 aa13.84□□□□□ -0.19
VTI1B-201ENST00000216456 PRR3P79522 188 aaKnown RBP13.83□□□□□ -0.2
VTI1B-201ENST00000216456 FAM104BQ5XKR9 115 aa13.83□□□□□ -0.2
VTI1B-201ENST00000216456 Q6ZUT4 128 aa13.83□□□□□ -0.2
VTI1B-201ENST00000216456 TRAV13-1A0A0B4J241 112 aa13.82□□□□□ -0.2
VTI1B-201ENST00000216456 IGLV4-69A0A075B6H9 119 aa13.81□□□□□ -0.2
VTI1B-201ENST00000216456 SMIM27A0A1W2PRY6 76 aa13.81□□□□□ -0.2
VTI1B-201ENST00000216456 SYCNQ0VAF6 134 aa13.81□□□□□ -0.2
VTI1B-201ENST00000216456 FAM74A3Q4VXF1 159 aa13.81□□□□□ -0.2
VTI1B-201ENST00000216456 NAT8Q9UHE5 227 aa13.81□□□□□ -0.2
VTI1B-201ENST00000216456 ZNF561-AS1K7EIQ3 104 aa13.8□□□□□ -0.2
VTI1B-201ENST00000216456 C5orf38Q86SI9 138 aa13.8□□□□□ -0.2
VTI1B-201ENST00000216456 RPL39P62891 51 aaKnown RBP13.79□□□□□ -0.2
VTI1B-201ENST00000216456 MRPL54Q6P161 138 aaKnown RBP13.79□□□□□ -0.2
VTI1B-201ENST00000216456 FAM104AQ969W3 186 aa13.79□□□□□ -0.2
VTI1B-201ENST00000216456 KIR2DL4Q99706 377 aa13.78□□□□□ -0.2
VTI1B-201ENST00000216456 OPRPNQ99935 248 aaPredicted RBP13.78□□□□□ -0.2
VTI1B-201ENST00000216456 C1orf196B1AJZ1 125 aa13.77□□□□□ -0.21
VTI1B-201ENST00000216456 COX7A2LO14548 114 aa13.77□□□□□ -0.21
VTI1B-201ENST00000216456 MALP21145 153 aa13.77□□□□□ -0.21
VTI1B-201ENST00000216456 GAGE2BQ13066 116 aa13.77□□□□□ -0.21
VTI1B-201ENST00000216456 CSDC2Q9Y534 153 aaKnown RBP13.77□□□□□ -0.21
VTI1B-201ENST00000216456 CKS2P33552 79 aa13.76□□□□□ -0.21
VTI1B-201ENST00000216456 A0A0J9YXV3 536 aa13.75□□□□□ -0.21
VTI1B-201ENST00000216456 D6R8Y8 96 aa13.75□□□□□ -0.21
VTI1B-201ENST00000216456 TNFRSF6BO95407 300 aa13.75□□□□□ -0.21
VTI1B-201ENST00000216456 PPP1R17O96001 155 aa13.75□□□□□ -0.21
VTI1B-201ENST00000216456 PTTG1IPP53801 180 aa13.75□□□□□ -0.21
VTI1B-201ENST00000216456 A0A1W2PNN7 141 aa13.74□□□□□ -0.21
VTI1B-201ENST00000216456 PPP1R2P9O14990 202 aa13.74□□□□□ -0.21
VTI1B-201ENST00000216456 NPYP01303 97 aa13.74□□□□□ -0.21
VTI1B-201ENST00000216456 PEA15Q15121 130 aa13.74□□□□□ -0.21
VTI1B-201ENST00000216456 TRBV24-1A0A075B6N3 115 aa13.73□□□□□ -0.21
VTI1B-201ENST00000216456 TCAPO15273 167 aa13.73□□□□□ -0.21
VTI1B-201ENST00000216456 CAMK2N2Q96S95 79 aa13.73□□□□□ -0.21
VTI1B-201ENST00000216456 C20orf78Q9BR46 151 aa13.73□□□□□ -0.21
VTI1B-201ENST00000216456 LINC00474Q9P2X8 69 aa13.73□□□□□ -0.21
VTI1B-201ENST00000216456 A0A1B0GXF2 115 aa13.72□□□□□ -0.21
VTI1B-201ENST00000216456 SMIM2Q9BVW6 85 aa13.72□□□□□ -0.21
VTI1B-201ENST00000216456 LOC107984640A0A0U1RRK4 108 aa13.71□□□□□ -0.21
VTI1B-201ENST00000216456 LINC00862A6NCI5 91 aa13.71□□□□□ -0.21
VTI1B-201ENST00000216456 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.71□□□□□ -0.21
VTI1B-201ENST00000216456 TIMM21Q9BVV7 248 aa13.71□□□□□ -0.21
VTI1B-201ENST00000216456 HBBP68871 147 aa13.7□□□□□ -0.22
VTI1B-201ENST00000216456 LINC01600Q96MT4 127 aa13.7□□□□□ -0.22
VTI1B-201ENST00000216456 RPL32P62910 135 aaKnown RBP13.69□□□□□ -0.22
VTI1B-201ENST00000216456 SPAG11BQ08648 103 aa13.69□□□□□ -0.22
VTI1B-201ENST00000216456 A0A1B0GW15 77 aa13.68□□□□□ -0.22
VTI1B-201ENST00000216456 APOMO95445 188 aa13.68□□□□□ -0.22
VTI1B-201ENST00000216456 RPL18AQ02543 176 aaKnown RBP13.68□□□□□ -0.22
VTI1B-201ENST00000216456 TMEM18Q96B42 140 aa13.68□□□□□ -0.22
VTI1B-201ENST00000216456 SMAGPQ0VAQ4 97 aa13.67□□□□□ -0.22
VTI1B-201ENST00000216456 SRSF9Q13242 221 aaKnown RBP eCLIP13.67□□□□□ -0.22
VTI1B-201ENST00000216456 LRP2P98164 4655 aa13.66□□□□□ -0.22
VTI1B-201ENST00000216456 C9orf116Q5BN46 136 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms