RNA–Protein interactions for RNA: YDL064W

UBC9, Transcript of SUMO-conjugating enzyme involved in the Smt3p conjugation pathway, yeast

Gene UBC9, Length 474 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC9	YDL064W	YPL216W	Q08964	1102 aa		4.29	□□□□□ -1.72
UBC9	YDL064W	YPK1	P12688	680 aa	Known RBP	4.28	□□□□□ -1.72
UBC9	YDL064W	MCM3	P24279	971 aa	Known RBP	4.28	□□□□□ -1.72
UBC9	YDL064W	DBF20	P32328	564 aa		4.28	□□□□□ -1.72
UBC9	YDL064W	CCL1	P37366	393 aa		4.28	□□□□□ -1.72
UBC9	YDL064W	ARB1	P40024	610 aa	Known RBP	4.28	□□□□□ -1.72
UBC9	YDL064W	QRI1	P43123	477 aa	Known RBP	4.28	□□□□□ -1.72
UBC9	YDL064W	STU2	P46675	888 aa		4.28	□□□□□ -1.72
UBC9	YDL064W	ATG16	Q03818	150 aa		4.28	□□□□□ -1.72
UBC9	YDL064W	CRD1	Q07560	283 aa		4.28	□□□□□ -1.72
UBC9	YDL064W	TPK2	P06245	380 aa		4.27	□□□□□ -1.73
UBC9	YDL064W	ADE3	P07245	946 aa	Known RBP	4.27	□□□□□ -1.73
UBC9	YDL064W	POL3	P15436	1097 aa		4.27	□□□□□ -1.73
UBC9	YDL064W	SIR1	P21691	654 aa		4.27	□□□□□ -1.73
UBC9	YDL064W	VPS24	P36095	224 aa	Known RBP	4.27	□□□□□ -1.73
UBC9	YDL064W	YBR138C	P38277	524 aa		4.27	□□□□□ -1.73
UBC9	YDL064W	IDS2	P46958	469 aa		4.27	□□□□□ -1.73
UBC9	YDL064W	SAP4	P53036	818 aa		4.27	□□□□□ -1.73
UBC9	YDL064W	YGL117W	P53133	265 aa		4.27	□□□□□ -1.73
UBC9	YDL064W	GFA1	P14742	717 aa	Known RBP	4.26	□□□□□ -1.73
UBC9	YDL064W	PHO81	P17442	1178 aa		4.26	□□□□□ -1.73
UBC9	YDL064W	RIT1	P23796	513 aa		4.26	□□□□□ -1.73
UBC9	YDL064W	PRP45	P28004	379 aa	Predicted RBP	4.26	□□□□□ -1.73
UBC9	YDL064W	CDC5	P32562	705 aa		4.26	□□□□□ -1.73
UBC9	YDL064W	MUP3	P38734	546 aa		4.26	□□□□□ -1.73
UBC9	YDL064W	PIH1	P38768	344 aa		4.26	□□□□□ -1.73
UBC9	YDL064W	VPS27	P40343	622 aa	Known RBP	4.26	□□□□□ -1.73
UBC9	YDL064W	CPR6	P53691	371 aa	Known RBP	4.26	□□□□□ -1.73
UBC9	YDL064W	YNL092W	P53934	400 aa		4.26	□□□□□ -1.73
UBC9	YDL064W	EIS1	Q05050	843 aa	Known RBP	4.26	□□□□□ -1.73
UBC9	YDL064W	ZPS1	Q12512	249 aa		4.26	□□□□□ -1.73
UBC9	YDL064W	CTT1	P06115	562 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	NCP1	P16603	691 aa	Known RBP	4.25	□□□□□ -1.73
UBC9	YDL064W	MSM1	P22438	575 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	PWP2	P25635	923 aa	Known RBP	4.25	□□□□□ -1.73
UBC9	YDL064W	YMC1	P32331	307 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	YEL020C	P39994	560 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	PUG1	P40100	303 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	YGR021W	P53212	290 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	CPR8	P53728	308 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	ESF2	P53743	316 aa	Known RBP	4.25	□□□□□ -1.73
UBC9	YDL064W	GIS1	Q03833	894 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	VPS64	Q03944	604 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	ARG7	Q04728	441 aa		4.25	□□□□□ -1.73
UBC9	YDL064W	IWR1	Q07532	353 aa	Predicted RBP	4.25	□□□□□ -1.73
UBC9	YDL064W	CPA2	P03965	1118 aa	Known RBP	4.24	□□□□□ -1.73
UBC9	YDL064W	LEU2	P04173	364 aa	Predicted RBP	4.24	□□□□□ -1.73
UBC9	YDL064W	RNR3	P21672	869 aa	Known RBP	4.24	□□□□□ -1.73
UBC9	YDL064W	VPS34	P22543	875 aa		4.24	□□□□□ -1.73
UBC9	YDL064W	TRX2	P22803	104 aa	Known RBP	4.24	□□□□□ -1.73
UBC9	YDL064W	SDH8	P38345	138 aa		4.24	□□□□□ -1.73
UBC9	YDL064W	ARO9	P38840	513 aa	Predicted RBP	4.24	□□□□□ -1.73
UBC9	YDL064W	COQ6	P53318	479 aa		4.24	□□□□□ -1.73
UBC9	YDL064W	PAP2	P53632	584 aa	Known RBP	4.24	□□□□□ -1.73
UBC9	YDL064W	ARC35	P53731	342 aa	Known RBP	4.24	□□□□□ -1.73
UBC9	YDL064W	YDL073W	Q07454	984 aa		4.24	□□□□□ -1.73
UBC9	YDL064W	AIM6	Q07716	390 aa		4.24	□□□□□ -1.73
UBC9	YDL064W	PCL8	Q08966	492 aa		4.24	□□□□□ -1.73
UBC9	YDL064W	TGS1	Q12052	315 aa		4.24	□□□□□ -1.73
UBC9	YDL064W	RPA135	P22138	1203 aa	Known RBP	4.23	□□□□□ -1.73
UBC9	YDL064W	SAT4	P25333	603 aa	Known RBP	4.23	□□□□□ -1.73
UBC9	YDL064W	YCR061W	P25639	631 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	ARP2	P32381	391 aa	Known RBP	4.23	□□□□□ -1.73
UBC9	YDL064W	EXO84	P38261	753 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	VPS8	P39702	1274 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	YIL166C	P40445	542 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	CAB2	P40506	365 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	YML119W	Q03208	357 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	CRF1	Q04930	467 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	SUL2	Q12325	893 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	Q0010	Q9ZZX9	128 aa		4.23	□□□□□ -1.73
UBC9	YDL064W	AAC1	P04710	309 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	WHI2	P12611	486 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	AMD2	P22580	549 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	CLB4	P24871	460 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	ADY2	P25613	283 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	PPZ2	P33329	710 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	LOT5	P34234	306 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	YFL015C	P43578	164 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	BNR1	P40450	1375 aa		4.22	□□□□□ -1.73
UBC9	YDL064W	SEC3	P33332	1336 aa	Known RBP	4.21	□□□□□ -1.73
UBC9	YDL064W	MIS1	P09440	975 aa	Known RBP	4.21	□□□□□ -1.74
UBC9	YDL064W	SPO11	P23179	398 aa		4.21	□□□□□ -1.74
UBC9	YDL064W	AAD3	P25612	363 aa		4.21	□□□□□ -1.74
UBC9	YDL064W	GDA1	P32621	518 aa		4.21	□□□□□ -1.74
UBC9	YDL064W	UGP1	P32861	499 aa	Known RBP	4.21	□□□□□ -1.74
UBC9	YDL064W	FLO10	P36170	1169 aa		4.21	□□□□□ -1.74
UBC9	YDL064W	TAM41	P53230	385 aa		4.21	□□□□□ -1.74
UBC9	YDL064W	APM1	Q00776	475 aa	Predicted RBP	4.21	□□□□□ -1.74
UBC9	YDL064W	VMS1	Q04311	632 aa	Known RBP	4.21	□□□□□ -1.74
UBC9	YDL064W	BLS1	Q06071	122 aa		4.21	□□□□□ -1.74
UBC9	YDL064W	ULA1	Q12059	462 aa		4.21	□□□□□ -1.74
UBC9	YDL064W	RPL7A	P05737	244 aa	Known RBP	4.2	□□□□□ -1.74
UBC9	YDL064W	ADE5,7	P07244	802 aa	Known RBP	4.2	□□□□□ -1.74
UBC9	YDL064W	NUC1	P08466	329 aa		4.2	□□□□□ -1.74
UBC9	YDL064W	PMA2	P19657	947 aa		4.2	□□□□□ -1.74
UBC9	YDL064W	MRS6	P32864	603 aa	Known RBP	4.2	□□□□□ -1.74
UBC9	YDL064W	BEM3	P32873	1128 aa		4.2	□□□□□ -1.74
UBC9	YDL064W	PTH2	P34222	208 aa		4.2	□□□□□ -1.74
UBC9	YDL064W	MTG2	P38860	518 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms