RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 ERVK-24P63145 666 aa9.26□□□□□ -0.93
VPS29-212ENST00000621131 RASIP1Q5U651 963 aa9.26□□□□□ -0.93
VPS29-212ENST00000621131 SND1Q7KZF4 910 aaKnown RBP eCLIP9.26□□□□□ -0.934e-6■■■□□ 14.7
VPS29-212ENST00000621131 PCOLCE2Q9UKZ9 415 aa9.26□□□□□ -0.93
VPS29-212ENST00000621131 SAMM50Q9Y512 469 aa9.26□□□□□ -0.93
VPS29-212ENST00000621131 RNGTTO60942 597 aaKnown RBP9.25□□□□□ -0.93
VPS29-212ENST00000621131 USP17L7P0C7H9 530 aa9.25□□□□□ -0.93
VPS29-212ENST00000621131 PDIA4P13667 645 aaKnown RBP9.25□□□□□ -0.93
VPS29-212ENST00000621131 HCLS1P14317 486 aaPredicted RBP9.25□□□□□ -0.93
VPS29-212ENST00000621131 COL19A1Q14993 1142 aa9.25□□□□□ -0.93
VPS29-212ENST00000621131 NFXL1Q6ZNB6 911 aa9.25□□□□□ -0.93
VPS29-212ENST00000621131 RNF214Q8ND24 703 aa9.25□□□□□ -0.93
VPS29-212ENST00000621131 CCDC39Q9UFE4 941 aa9.25□□□□□ -0.93
VPS29-212ENST00000621131 ZC3H7BQ9UGR2 993 aaKnown RBP9.25□□□□□ -0.93
VPS29-212ENST00000621131 COL17A1Q9UMD9 1497 aaPredicted RBP9.25□□□□□ -0.93
VPS29-212ENST00000621131 ANKRD33BA6NCL7 494 aa9.24□□□□□ -0.93
VPS29-212ENST00000621131 TRIM37O94972 964 aa9.24□□□□□ -0.93
VPS29-212ENST00000621131 CDK5R2Q13319 367 aa9.24□□□□□ -0.93
VPS29-212ENST00000621131 LRRC4CQ9HCJ2 640 aa9.24□□□□□ -0.93
VPS29-212ENST00000621131 PRPF40AO75400 957 aaKnown RBP9.23□□□□□ -0.93
VPS29-212ENST00000621131 GNA15P30679 374 aa9.23□□□□□ -0.93
VPS29-212ENST00000621131 MCTP1Q6DN14 999 aa9.23□□□□□ -0.93
VPS29-212ENST00000621131 ISL2Q96A47 359 aa9.23□□□□□ -0.93
VPS29-212ENST00000621131 RNF19AQ9NV58 838 aa9.23□□□□□ -0.93
VPS29-212ENST00000621131 BSDC1Q9NW68 430 aaPredicted RBP9.23□□□□□ -0.93
VPS29-212ENST00000621131 CYP8B1Q9UNU6 501 aa9.23□□□□□ -0.93
VPS29-212ENST00000621131 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.22□□□□□ -0.93
VPS29-212ENST00000621131 CELA3AP09093 270 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 IRAK1P51617 712 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 RING1Q06587 406 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 LRRC14Q15048 493 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 CYP27C1Q4G0S4 372 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 SCARA3Q6AZY7 606 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 LLGL2Q6P1M3 1020 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 ACSBG1Q96GR2 724 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 AK5Q9Y6K8 562 aa9.22□□□□□ -0.93
VPS29-212ENST00000621131 FAM87AP0C7U9 286 aa9.21□□□□□ -0.94
VPS29-212ENST00000621131 SV2BQ7L1I2 683 aa9.21□□□□□ -0.94
VPS29-212ENST00000621131 CSADQ9Y600 493 aa9.21□□□□□ -0.94
VPS29-212ENST00000621131 LEFTY1O75610 366 aa9.2□□□□□ -0.94
VPS29-212ENST00000621131 EIF4BP23588 611 aaKnown RBP9.2□□□□□ -0.94
VPS29-212ENST00000621131 NTF4P34130 210 aa9.2□□□□□ -0.94
VPS29-212ENST00000621131 PPM1JQ5JR12 505 aa9.2□□□□□ -0.94
VPS29-212ENST00000621131 PCNX4Q63HM2 1172 aa9.2□□□□□ -0.94
VPS29-212ENST00000621131 C12orf40Q86WS4 652 aa9.2□□□□□ -0.94
VPS29-212ENST00000621131 DUSP9Q99956 384 aaKnown RBP9.2□□□□□ -0.94
VPS29-212ENST00000621131 ADGRE2Q9UHX3 823 aa9.2□□□□□ -0.94
VPS29-212ENST00000621131 DCDC2CA8MYV0 355 aa9.19□□□□□ -0.94
VPS29-212ENST00000621131 PTPN11Q06124 597 aaPredicted RBP9.19□□□□□ -0.94
VPS29-212ENST00000621131 EAPPQ56P03 285 aaPredicted RBP9.19□□□□□ -0.94
VPS29-212ENST00000621131 DNAJC14Q6Y2X3 702 aaPredicted RBP9.19□□□□□ -0.94
VPS29-212ENST00000621131 VSIG10LQ86VR7 867 aa9.19□□□□□ -0.94
VPS29-212ENST00000621131 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.19□□□□□ -0.94
VPS29-212ENST00000621131 DUSP23Q9BVJ7 150 aa9.19□□□□□ -0.94
VPS29-212ENST00000621131 SSU72Q9NP77 194 aaKnown RBP9.19□□□□□ -0.94
VPS29-212ENST00000621131 ANGEL1Q9UNK9 670 aaKnown RBP9.19□□□□□ -0.94
VPS29-212ENST00000621131 TAL1P17542 331 aaPredicted RBP9.18□□□□□ -0.94
VPS29-212ENST00000621131 FGD1P98174 961 aa9.18□□□□□ -0.94
VPS29-212ENST00000621131 ABI1Q8IZP0 508 aa9.18□□□□□ -0.94
VPS29-212ENST00000621131 FBXL18Q96ME1 805 aa9.18□□□□□ -0.94
VPS29-212ENST00000621131 KRTAP9-2Q9BYQ4 174 aa9.18□□□□□ -0.94
VPS29-212ENST00000621131 PCDHA4Q9UN74 947 aa9.18□□□□□ -0.94
VPS29-212ENST00000621131 NPAS4Q8IUM7 802 aa9.17□□□□□ -0.94
VPS29-212ENST00000621131 TTF2Q9UNY4 1162 aaKnown RBP9.17□□□□□ -0.94
VPS29-212ENST00000621131 FANCGO15287 622 aa9.16□□□□□ -0.94
VPS29-212ENST00000621131 INPP5AQ14642 412 aa9.16□□□□□ -0.94
VPS29-212ENST00000621131 UBE3DQ7Z6J8 389 aa9.16□□□□□ -0.94
VPS29-212ENST00000621131 U3KQE9 123 aa9.16□□□□□ -0.94
VPS29-212ENST00000621131 KRTAP9-6A0A140TA67 174 aa9.15□□□□□ -0.94
VPS29-212ENST00000621131 ZBTB37Q5TC79 503 aa9.15□□□□□ -0.94
VPS29-212ENST00000621131 FAM214BQ7L5A3 538 aa9.15□□□□□ -0.94
VPS29-212ENST00000621131 WFDC3Q8IUB2 231 aa9.15□□□□□ -0.94
VPS29-212ENST00000621131 BCL7CQ8WUZ0 217 aaPredicted RBP9.15□□□□□ -0.94
VPS29-212ENST00000621131 PAK6Q9NQU5 681 aaPredicted RBP9.15□□□□□ -0.94
VPS29-212ENST00000621131 TTBK2Q6IQ55 1244 aa9.14□□□□□ -0.95
VPS29-212ENST00000621131 CYFIP1Q7L576 1253 aa9.14□□□□□ -0.95
VPS29-212ENST00000621131 TP53INP2Q8IXH6 220 aa9.14□□□□□ -0.95
VPS29-212ENST00000621131 PLD6Q8N2A8 252 aaKnown RBP9.14□□□□□ -0.95
VPS29-212ENST00000621131 TOP6BLQ8N6T0 577 aa9.14□□□□□ -0.95
VPS29-212ENST00000621131 FAM181AQ8N9Y4 354 aa9.14□□□□□ -0.95
VPS29-212ENST00000621131 NETO1Q8TDF5 533 aa9.14□□□□□ -0.95
VPS29-212ENST00000621131 MKNK2Q9HBH9 465 aa9.14□□□□□ -0.95
VPS29-212ENST00000621131 PARP2Q9UGN5 583 aa9.14□□□□□ -0.95
VPS29-212ENST00000621131 OXCT1P55809 520 aa9.13□□□□□ -0.95
VPS29-212ENST00000621131 DAB2P98082 770 aa9.13□□□□□ -0.95
VPS29-212ENST00000621131 LRFN4Q6PJG9 635 aa9.13□□□□□ -0.95
VPS29-212ENST00000621131 CBLL1Q75N03 491 aa9.13□□□□□ -0.95
VPS29-212ENST00000621131 FLCNQ8NFG4 579 aa9.13□□□□□ -0.95
VPS29-212ENST00000621131 GAL3ST3Q96A11 431 aa9.13□□□□□ -0.95
VPS29-212ENST00000621131 HEXIM2Q96MH2 286 aaKnown RBP9.13□□□□□ -0.95
VPS29-212ENST00000621131 RPS26P62854 115 aaKnown RBP9.12□□□□□ -0.95
VPS29-212ENST00000621131 BNIP3Q12983 259 aa9.12□□□□□ -0.95
VPS29-212ENST00000621131 CCDC85BQ15834 202 aaPredicted RBP9.12□□□□□ -0.95
VPS29-212ENST00000621131 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.12□□□□□ -0.95
VPS29-212ENST00000621131 SPRED2Q7Z698 418 aa9.12□□□□□ -0.95
VPS29-212ENST00000621131 ELMO3Q96BJ8 720 aa9.12□□□□□ -0.95
VPS29-212ENST00000621131 PICK1Q9NRD5 415 aa9.12□□□□□ -0.95
VPS29-212ENST00000621131 SLC5A6Q9Y289 635 aa9.12□□□□□ -0.95
VPS29-212ENST00000621131 FBXO33Q7Z6M2 555 aa9.11□□□□□ -0.95
VPS29-212ENST00000621131 ZNF507Q8TCN5 953 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms