RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PARK7Q99497 189 aaKnown RBP16.8■□□□□ 0.28
TRIM28-211ENST00000597968 GPR108Q9NPR9 543 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 PCDH10Q9P2E7 1040 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 SLC45A1Q9Y2W3 748 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 PDHXO00330 501 aa16.79■□□□□ 0.28
TRIM28-211ENST00000597968 CTNND1O60716 968 aaKnown RBP16.79■□□□□ 0.28
TRIM28-211ENST00000597968 UQCRFS1P1P0C7P4 283 aa16.79■□□□□ 0.28
TRIM28-211ENST00000597968 GORABQ5T7V8 394 aa16.79■□□□□ 0.28
TRIM28-211ENST00000597968 TBC1D2Q9BYX2 928 aa16.79■□□□□ 0.28
TRIM28-211ENST00000597968 PICK1Q9NRD5 415 aa16.79■□□□□ 0.28
TRIM28-211ENST00000597968 COL2A1P02458 1487 aaPredicted RBP16.79■□□□□ 0.28
TRIM28-211ENST00000597968 POTEFA5A3E0 1075 aa16.78■□□□□ 0.28
TRIM28-211ENST00000597968 BTDP43251 543 aa16.78■□□□□ 0.28
TRIM28-211ENST00000597968 ZKSCAN2Q63HK3 967 aa16.78■□□□□ 0.28
TRIM28-211ENST00000597968 SPATA5Q8NB90 893 aa16.78■□□□□ 0.28
TRIM28-211ENST00000597968 NEUROD6Q96NK8 337 aa16.78■□□□□ 0.28
TRIM28-211ENST00000597968 PTCH2Q9Y6C5 1203 aa16.78■□□□□ 0.28
TRIM28-211ENST00000597968 ADGRA2Q96PE1 1338 aa16.77■□□□□ 0.28
TRIM28-211ENST00000597968 A0A0G2JLL6 359 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-211ENST00000597968 CAPN2P17655 700 aa16.77■□□□□ 0.28
TRIM28-211ENST00000597968 PTPRAP18433 802 aa16.77■□□□□ 0.28
TRIM28-211ENST00000597968 CAP1Q01518 475 aa16.77■□□□□ 0.28
TRIM28-211ENST00000597968 MECOMQ03112 1051 aa16.77■□□□□ 0.28
TRIM28-211ENST00000597968 MOGSQ13724 837 aa16.77■□□□□ 0.28
TRIM28-211ENST00000597968 PRRT2Q7Z6L0 340 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-211ENST00000597968 ZSCAN29Q8IWY8 852 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-211ENST00000597968 FRAT1Q92837 279 aaPredicted RBP16.77■□□□□ 0.28
TRIM28-211ENST00000597968 NSUN4Q96CB9 384 aaKnown RBP16.77■□□□□ 0.28
TRIM28-211ENST00000597968 HMG20BQ9P0W2 317 aa16.77■□□□□ 0.28
TRIM28-211ENST00000597968 RHBDL3P58872 404 aa16.76■□□□□ 0.27
TRIM28-211ENST00000597968 ZFPM1Q8IX07 1006 aa16.76■□□□□ 0.27
TRIM28-211ENST00000597968 ZNF512BQ96KM6 892 aaPredicted RBP16.76■□□□□ 0.27
TRIM28-211ENST00000597968 SRRDQ9UH36 339 aa16.76■□□□□ 0.27
TRIM28-211ENST00000597968 AFG3L2Q9Y4W6 797 aa16.76■□□□□ 0.27
TRIM28-211ENST00000597968 ZHX2Q9Y6X8 837 aa16.76■□□□□ 0.27
TRIM28-211ENST00000597968 MYH2Q9UKX2 1941 aa16.76■□□□□ 0.27
TRIM28-211ENST00000597968 BCAR3O75815 825 aa16.75■□□□□ 0.27
TRIM28-211ENST00000597968 POLA2Q14181 598 aa16.75■□□□□ 0.27
TRIM28-211ENST00000597968 DIEXFQ68CQ4 756 aaKnown RBP16.75■□□□□ 0.27
TRIM28-211ENST00000597968 TMED8Q6PL24 325 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-211ENST00000597968 SSH3Q8TE77 659 aa16.75■□□□□ 0.27
TRIM28-211ENST00000597968 OSBPL5Q9H0X9 879 aaPredicted RBP16.75■□□□□ 0.27
TRIM28-211ENST00000597968 PNMA6EA0A0J9YXQ4 647 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 DDTLA6NHG4 134 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-211ENST00000597968 BCRP11274 1271 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 PLCG2P16885 1265 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 PSMC4P43686 418 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 CCDC158Q5M9N0 1113 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 GPAT2Q6NUI2 795 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 SH3BP5LQ7L8J4 393 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 NKX2-3Q8TAU0 364 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 NOL10Q9BSC4 688 aaKnown RBP16.74■□□□□ 0.27
TRIM28-211ENST00000597968 DHX36Q9H2U1 1008 aaKnown RBP16.74■□□□□ 0.27
TRIM28-211ENST00000597968 DDX4Q9NQI0 724 aaKnown RBP16.74■□□□□ 0.27
TRIM28-211ENST00000597968 HERC5Q9UII4 1024 aaKnown RBP16.74■□□□□ 0.27
TRIM28-211ENST00000597968 DOCK2Q92608 1830 aa16.74■□□□□ 0.27
TRIM28-211ENST00000597968 BAG3O95817 575 aa16.73■□□□□ 0.27
TRIM28-211ENST00000597968 ATP8B2P98198 1209 aa16.73■□□□□ 0.27
TRIM28-211ENST00000597968 SLC4A8Q2Y0W8 1093 aa16.73■□□□□ 0.27
TRIM28-211ENST00000597968 CERS3Q8IU89 383 aa16.73■□□□□ 0.27
TRIM28-211ENST00000597968 TMEM57Q8N5G2 664 aa16.73■□□□□ 0.27
TRIM28-211ENST00000597968 LRP2BPQ9P2M1 347 aa16.73■□□□□ 0.27
TRIM28-211ENST00000597968 CPA4Q9UI42 421 aa16.73■□□□□ 0.27
TRIM28-211ENST00000597968 AK9Q5TCS8 1911 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 EN2P19622 333 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-211ENST00000597968 MCAMP43121 646 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 FCGRTP55899 365 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 PICALMQ13492 652 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 FTSJ3Q8IY81 847 aaKnown RBP16.72■□□□□ 0.27
TRIM28-211ENST00000597968 PROCA1Q8NCQ7 364 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-211ENST00000597968 ZNF384Q8TF68 577 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 CLUAP1Q96AJ1 413 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 TRIM47Q96LD4 638 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 ARHGAP39Q9C0H5 1083 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 RAI14Q9P0K7 980 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 PNMA3Q9UL41 463 aa16.72■□□□□ 0.27
TRIM28-211ENST00000597968 NOP58Q9Y2X3 529 aaKnown RBP16.72■□□□□ 0.27
TRIM28-211ENST00000597968 FMNL1O95466 1100 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-211ENST00000597968 OSBPP22059 807 aa16.71■□□□□ 0.27
TRIM28-211ENST00000597968 PPP4CP60510 307 aa16.71■□□□□ 0.27
TRIM28-211ENST00000597968 TNNI3KQ59H18 835 aa16.71■□□□□ 0.27
TRIM28-211ENST00000597968 RAET1EQ8TD07 263 aa16.71■□□□□ 0.27
TRIM28-211ENST00000597968 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.71■□□□□ 0.27
TRIM28-211ENST00000597968 GINM1Q9NU53 330 aa16.71■□□□□ 0.27
TRIM28-211ENST00000597968 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-211ENST00000597968 FPGT-TNNI3KV9GXZ4 949 aa16.71■□□□□ 0.27
TRIM28-211ENST00000597968 GRK4P32298 578 aa16.7■□□□□ 0.26
TRIM28-211ENST00000597968 PABPC4Q13310 644 aaKnown RBP eCLIP16.7■□□□□ 0.26
TRIM28-211ENST00000597968 TTC39AQ5SRH9 613 aa16.7■□□□□ 0.26
TRIM28-211ENST00000597968 SLAIN1Q8ND83 568 aa16.7■□□□□ 0.26
TRIM28-211ENST00000597968 PI4KBQ9UBF8 816 aa16.7■□□□□ 0.26
TRIM28-211ENST00000597968 AGTPBP1Q9UPW5 1226 aa16.7■□□□□ 0.26
TRIM28-211ENST00000597968 TNNQ9UQP3 1299 aa16.7■□□□□ 0.26
TRIM28-211ENST00000597968 MYPNQ86TC9 1320 aa16.7■□□□□ 0.26
TRIM28-211ENST00000597968 ZBTB7BO15156 539 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-211ENST00000597968 UBXN2AP68543 259 aa16.69■□□□□ 0.26
TRIM28-211ENST00000597968 OS9Q13438 667 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-211ENST00000597968 NAA16Q6N069 864 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-211ENST00000597968 METTL16Q86W50 562 aaKnown RBP16.69■□□□□ 0.26
TRIM28-211ENST00000597968 SMCR8Q8TEV9 937 aaPredicted RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms